RNA–Protein interactions for RNA: ENST00000508871.5

NEDD4-209, Transcript of neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase, humanhuman

TSL 1 (best)

Gene NEDD4, Length 5,707 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD4-209ENST00000508871 SHISA8B8ZZ34 492 aa3.58□□□□□ -1.84
NEDD4-209ENST00000508871 PRMT5O14744 637 aaPredicted RBP3.58□□□□□ -1.84
NEDD4-209ENST00000508871 LANCL1O43813 399 aa3.58□□□□□ -1.84
NEDD4-209ENST00000508871 PRAF2O60831 178 aa3.58□□□□□ -1.84
NEDD4-209ENST00000508871 BANF1O75531 89 aa3.58□□□□□ -1.84
NEDD4-209ENST00000508871 FADS2O95864 444 aaKnown RBP3.58□□□□□ -1.84
NEDD4-209ENST00000508871 SRMP19623 302 aa3.58□□□□□ -1.84
NEDD4-209ENST00000508871 TBPP20226 339 aa3.58□□□□□ -1.84
NEDD4-209ENST00000508871 COMTP21964 271 aa3.58□□□□□ -1.84
NEDD4-209ENST00000508871 FPR3P25089 353 aa3.58□□□□□ -1.84
NEDD4-209ENST00000508871 CSNK1DP48730 415 aa3.58□□□□□ -1.84
NEDD4-209ENST00000508871 CLDN2P57739 230 aa3.58□□□□□ -1.84
NEDD4-209ENST00000508871 DAOAP59103 153 aa3.58□□□□□ -1.84
NEDD4-209ENST00000508871 RAB10P61026 200 aa3.58□□□□□ -1.84
NEDD4-209ENST00000508871 ARF6P62330 175 aa3.58□□□□□ -1.84
NEDD4-209ENST00000508871 H3F3AP84243 136 aa3.58□□□□□ -1.84
NEDD4-209ENST00000508871 ZNF91Q05481 1191 aa3.58□□□□□ -1.84
NEDD4-209ENST00000508871 ILKQ13418 452 aa3.58□□□□□ -1.84
NEDD4-209ENST00000508871 HTR4Q13639 388 aa3.58□□□□□ -1.84
NEDD4-209ENST00000508871 GRM7Q14831 915 aa3.58□□□□□ -1.84
NEDD4-209ENST00000508871 SLC10A1Q14973 349 aa3.58□□□□□ -1.84
NEDD4-209ENST00000508871 EXOSC7Q15024 291 aaKnown RBP3.58□□□□□ -1.84
NEDD4-209ENST00000508871 HAGHQ16775 308 aa3.58□□□□□ -1.84
NEDD4-209ENST00000508871 ADAM5Q6NVV9 412 aa3.58□□□□□ -1.84
NEDD4-209ENST00000508871 Q6ZTK2 550 aa3.58□□□□□ -1.84
NEDD4-209ENST00000508871 SLC24A5Q71RS6 500 aa3.58□□□□□ -1.84
NEDD4-209ENST00000508871 SERPINA11Q86U17 422 aa3.58□□□□□ -1.84
NEDD4-209ENST00000508871 YRDCQ86U90 279 aaKnown RBP3.58□□□□□ -1.84
NEDD4-209ENST00000508871 ADGRG5Q8IZF4 528 aa3.58□□□□□ -1.84
NEDD4-209ENST00000508871 PYROXD1Q8WU10 500 aa3.58□□□□□ -1.84
NEDD4-209ENST00000508871 C2orf15Q8WU43 125 aaKnown RBP3.58□□□□□ -1.84
NEDD4-209ENST00000508871 SMAP2Q8WU79 429 aaPredicted RBP3.58□□□□□ -1.84
NEDD4-209ENST00000508871 NEDD4LQ96PU5 975 aa3.58□□□□□ -1.84
NEDD4-209ENST00000508871 TAPBPLQ9BX59 468 aa3.58□□□□□ -1.84
NEDD4-209ENST00000508871 TMEM184CQ9NVA4 438 aa3.58□□□□□ -1.84
NEDD4-209ENST00000508871 ANKRD10Q9NXR5 420 aa3.58□□□□□ -1.84
NEDD4-209ENST00000508871 DNAJC27Q9NZQ0 273 aa3.58□□□□□ -1.84
NEDD4-209ENST00000508871 DOK5Q9P104 306 aa3.58□□□□□ -1.84
NEDD4-209ENST00000508871 LHX3Q9UBR4 397 aa3.58□□□□□ -1.84
NEDD4-209ENST00000508871 UTS2RQ9UKP6 389 aa3.58□□□□□ -1.84
NEDD4-209ENST00000508871 EXOSC1Q9Y3B2 195 aaKnown RBP3.58□□□□□ -1.84
NEDD4-209ENST00000508871 LOC102724200A0A096LPH7 203 aaPredicted RBP3.57□□□□□ -1.84
NEDD4-209ENST00000508871 TVP23AA6NH52 213 aa3.57□□□□□ -1.84
NEDD4-209ENST00000508871 FAM90A20PA6NIJ5 464 aa3.57□□□□□ -1.84
NEDD4-209ENST00000508871 FABP7O15540 132 aa3.57□□□□□ -1.84
NEDD4-209ENST00000508871 ADAM12O43184 909 aa3.57□□□□□ -1.84
NEDD4-209ENST00000508871 B4GALT5O43286 388 aa3.57□□□□□ -1.84
NEDD4-209ENST00000508871 SCELO95171 688 aa3.57□□□□□ -1.84
NEDD4-209ENST00000508871 RAF1P04049 648 aa3.57□□□□□ -1.84
NEDD4-209ENST00000508871 DCNP07585 359 aaKnown RBP3.57□□□□□ -1.84
NEDD4-209ENST00000508871 SNRPAP09012 282 aaKnown RBP3.57□□□□□ -1.84
NEDD4-209ENST00000508871 ITGAMP11215 1152 aa3.57□□□□□ -1.84
NEDD4-209ENST00000508871 GGT1P19440 569 aa3.57□□□□□ -1.84
NEDD4-209ENST00000508871 COILP38432 576 aaPredicted RBP3.57□□□□□ -1.84
NEDD4-209ENST00000508871 SLC6A11P48066 632 aa3.57□□□□□ -1.84
NEDD4-209ENST00000508871 NPBWR2P48146 333 aa3.57□□□□□ -1.84
NEDD4-209ENST00000508871 SLC35A2P78381 396 aa3.57□□□□□ -1.84
NEDD4-209ENST00000508871 SLC35B1P78383 322 aa3.57□□□□□ -1.84
NEDD4-209ENST00000508871 TFAMQ00059 246 aaKnown RBP3.57□□□□□ -1.84
NEDD4-209ENST00000508871 GPR18Q14330 331 aa3.57□□□□□ -1.84
NEDD4-209ENST00000508871 SLC1A5Q15758 541 aa3.57□□□□□ -1.84
NEDD4-209ENST00000508871 PXDC1Q5TGL8 231 aa3.57□□□□□ -1.84
NEDD4-209ENST00000508871 ZNF585AQ6P3V2 769 aa3.57□□□□□ -1.84
NEDD4-209ENST00000508871 WDR74Q6RFH5 385 aaPredicted RBP3.57□□□□□ -1.84
NEDD4-209ENST00000508871 PARS2Q7L3T8 475 aaKnown RBP3.57□□□□□ -1.84
NEDD4-209ENST00000508871 ABHD12BQ7Z5M8 362 aaPredicted RBP3.57□□□□□ -1.84
NEDD4-209ENST00000508871 RNF130Q86XS8 419 aa3.57□□□□□ -1.84
NEDD4-209ENST00000508871 CLVS1Q8IUQ0 354 aaPredicted RBP3.57□□□□□ -1.84
NEDD4-209ENST00000508871 IGSF8Q969P0 613 aa3.57□□□□□ -1.84
NEDD4-209ENST00000508871 MYADMQ96S97 322 aa3.57□□□□□ -1.84
NEDD4-209ENST00000508871 SIGMAR1Q99720 223 aa3.57□□□□□ -1.84
NEDD4-209ENST00000508871 PCBD2Q9H0N5 130 aa3.57□□□□□ -1.84
NEDD4-209ENST00000508871 EGLN3Q9H6Z9 239 aa3.57□□□□□ -1.84
NEDD4-209ENST00000508871 UGT1A7Q9HAW7 530 aa3.57□□□□□ -1.84
NEDD4-209ENST00000508871 UGT1A8Q9HAW9 530 aa3.57□□□□□ -1.84
NEDD4-209ENST00000508871 SPANXB1Q9NS25 103 aaPredicted RBP3.57□□□□□ -1.84
NEDD4-209ENST00000508871 GPR173Q9NS66 373 aa3.57□□□□□ -1.84
NEDD4-209ENST00000508871 ZDHHC18Q9NUE0 388 aa3.57□□□□□ -1.84
NEDD4-209ENST00000508871 ZNF446Q9NWS9 450 aa3.57□□□□□ -1.84
NEDD4-209ENST00000508871 TREM2Q9NZC2 230 aa3.57□□□□□ -1.84
NEDD4-209ENST00000508871 ZDHHC2Q9UIJ5 367 aa3.57□□□□□ -1.84
NEDD4-209ENST00000508871 PLLPQ9Y342 182 aa3.57□□□□□ -1.84
NEDD4-209ENST00000508871 LOC105369274A0A096LPK9 316 aa3.57□□□□□ -1.84
NEDD4-209ENST00000508871 LOC102723532A0A0G2JNH3 316 aa3.57□□□□□ -1.84
NEDD4-209ENST00000508871 A0A1W2PPQ1 181 aa3.57□□□□□ -1.84
NEDD4-209ENST00000508871 G3V4G9 280 aa3.57□□□□□ -1.84
NEDD4-209ENST00000508871 KLF11O14901 512 aa3.57□□□□□ -1.84
NEDD4-209ENST00000508871 RAD1O60671 282 aa3.57□□□□□ -1.84
NEDD4-209ENST00000508871 CCDC22O60826 627 aa3.57□□□□□ -1.84
NEDD4-209ENST00000508871 EEDO75530 441 aaKnown RBP3.57□□□□□ -1.84
NEDD4-209ENST00000508871 NDUFB4O95168 129 aa3.57□□□□□ -1.84
NEDD4-209ENST00000508871 MMP7P09237 267 aaPredicted RBP3.57□□□□□ -1.84
NEDD4-209ENST00000508871 ADORA3P0DMS8 318 aa3.57□□□□□ -1.84
NEDD4-209ENST00000508871 RAB5AP20339 215 aa3.57□□□□□ -1.84
NEDD4-209ENST00000508871 GPD1P21695 349 aa3.57□□□□□ -1.84
NEDD4-209ENST00000508871 SRSF3P84103 164 aaKnown RBP3.57□□□□□ -1.84
NEDD4-209ENST00000508871 MC2RQ01718 297 aa3.57□□□□□ -1.84
NEDD4-209ENST00000508871 PAX5Q02548 391 aa3.57□□□□□ -1.84
NEDD4-209ENST00000508871 SIX1Q15475 284 aaPredicted RBP3.57□□□□□ -1.84
NEDD4-209ENST00000508871 GGTA1PQ4G0N0 100 aa3.57□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms