RNA–Protein interactions for RNA: ENST00000493919.5

BRCA1-222, Transcript of BRCA1, DNA repair associated, human

TSL 2

Gene BRCA1, Length 1,948 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
BRCA1-222	ENST00000493919	SMS	P52788	366 aa		10.62	□□□□□ -0.71
BRCA1-222	ENST00000493919	ITGA1	P56199	1179 aa		10.62	□□□□□ -0.71
BRCA1-222	ENST00000493919	SH3BP2	P78314	561 aa		10.62	□□□□□ -0.71
BRCA1-222	ENST00000493919	DEFA5	Q01523	94 aa		10.62	□□□□□ -0.71
BRCA1-222	ENST00000493919	IL18	Q14116	193 aa		10.62	□□□□□ -0.71
BRCA1-222	ENST00000493919	FGFBP1	Q14512	234 aa		10.62	□□□□□ -0.71
BRCA1-222	ENST00000493919	TSN	Q15631	228 aa	Known RBP	10.62	□□□□□ -0.71
BRCA1-222	ENST00000493919	ATG9B	Q674R7	924 aa		10.62	□□□□□ -0.71
BRCA1-222	ENST00000493919	UNQ6494/PRO21346	Q6UXR6	183 aa		10.62	□□□□□ -0.71
BRCA1-222	ENST00000493919	ABHD13	Q7L211	337 aa		10.62	□□□□□ -0.71
BRCA1-222	ENST00000493919	PXK	Q7Z7A4	578 aa		10.62	□□□□□ -0.71
BRCA1-222	ENST00000493919	OR2T4	Q8NH00	348 aa		10.62	□□□□□ -0.71
BRCA1-222	ENST00000493919	UBASH3B	Q8TF42	649 aa		10.62	□□□□□ -0.71
BRCA1-222	ENST00000493919	EXTL1	Q92935	676 aa		10.62	□□□□□ -0.71
BRCA1-222	ENST00000493919	HIST1H2AH	Q96KK5	128 aa		10.62	□□□□□ -0.71
BRCA1-222	ENST00000493919	CNN2	Q99439	309 aa	Known RBP	10.62	□□□□□ -0.71
BRCA1-222	ENST00000493919	HIST1H2AJ	Q99878	128 aa		10.62	□□□□□ -0.71
BRCA1-222	ENST00000493919	H2AFJ	Q9BTM1	129 aa		10.62	□□□□□ -0.71
BRCA1-222	ENST00000493919	EGLN1	Q9GZT9	426 aa		10.62	□□□□□ -0.71
BRCA1-222	ENST00000493919	COMMD4	Q9H0A8	199 aa		10.62	□□□□□ -0.71
BRCA1-222	ENST00000493919	MYNN	Q9NPC7	610 aa		10.62	□□□□□ -0.71
BRCA1-222	ENST00000493919	FAM118A	Q9NWS6	357 aa		10.62	□□□□□ -0.71
BRCA1-222	ENST00000493919	PHF11	Q9UIL8	331 aa		10.62	□□□□□ -0.71
BRCA1-222	ENST00000493919	PPIE	Q9UNP9	301 aa	Known RBP	10.62	□□□□□ -0.71
BRCA1-222	ENST00000493919	FBXO7	Q9Y3I1	522 aa		10.62	□□□□□ -0.71
BRCA1-222	ENST00000493919	ADAM18	Q9Y3Q7	739 aa		10.62	□□□□□ -0.71
BRCA1-222	ENST00000493919	LYVE1	Q9Y5Y7	322 aa		10.62	□□□□□ -0.71
BRCA1-222	ENST00000493919	MRPS18B	Q9Y676	258 aa	Known RBP	10.62	□□□□□ -0.71
BRCA1-222	ENST00000493919	ANKRD12	Q6UB98	2062 aa		10.62	□□□□□ -0.71
BRCA1-222	ENST00000493919		A0A0J9YY10	115 aa		10.62	□□□□□ -0.71
BRCA1-222	ENST00000493919	SUPT3H	B4E1H0	165 aa		10.62	□□□□□ -0.71
BRCA1-222	ENST00000493919	NPIPB9	F8W1W9	429 aa		10.62	□□□□□ -0.71
BRCA1-222	ENST00000493919		M0R143	59 aa		10.62	□□□□□ -0.71
BRCA1-222	ENST00000493919	PPIH	O43447	177 aa	Known RBP	10.62	□□□□□ -0.71
BRCA1-222	ENST00000493919	ALDOA	P04075	364 aa	Known RBP	10.62	□□□□□ -0.71
BRCA1-222	ENST00000493919	RPLP1	P05386	114 aa	Known RBP	10.62	□□□□□ -0.71
BRCA1-222	ENST00000493919	ST6GAL1	P15907	406 aa		10.62	□□□□□ -0.71
BRCA1-222	ENST00000493919	GLRA1	P23415	457 aa		10.62	□□□□□ -0.71
BRCA1-222	ENST00000493919	IMPA1	P29218	277 aa		10.62	□□□□□ -0.71
BRCA1-222	ENST00000493919	CD200	P41217	278 aa		10.62	□□□□□ -0.71
BRCA1-222	ENST00000493919	ZNF41	P51814	821 aa	Predicted RBP	10.62	□□□□□ -0.71
BRCA1-222	ENST00000493919	PNLIPRP1	P54315	467 aa		10.62	□□□□□ -0.71
BRCA1-222	ENST00000493919	TMEM33	P57088	247 aa		10.62	□□□□□ -0.71
BRCA1-222	ENST00000493919	RGS8	P57771	180 aa	Predicted RBP	10.62	□□□□□ -0.71
BRCA1-222	ENST00000493919	EEFSEC	P57772	596 aa	Known RBP	10.62	□□□□□ -0.71
BRCA1-222	ENST00000493919	IRF9	Q00978	393 aa		10.62	□□□□□ -0.71
BRCA1-222	ENST00000493919	SKP2	Q13309	424 aa		10.62	□□□□□ -0.71
BRCA1-222	ENST00000493919	KIR2DS3	Q14952	304 aa		10.62	□□□□□ -0.71
BRCA1-222	ENST00000493919	KLHL22	Q53GT1	634 aa		10.62	□□□□□ -0.71
BRCA1-222	ENST00000493919	SFRP5	Q5T4F7	317 aa		10.62	□□□□□ -0.71
BRCA1-222	ENST00000493919	TMEM236	Q5W0B7	351 aa		10.62	□□□□□ -0.71
BRCA1-222	ENST00000493919	SBSN	Q6UWP8	590 aa		10.62	□□□□□ -0.71
BRCA1-222	ENST00000493919	CHMP1B	Q7LBR1	199 aa		10.62	□□□□□ -0.71
BRCA1-222	ENST00000493919	THAP5	Q7Z6K1	395 aa		10.62	□□□□□ -0.71
BRCA1-222	ENST00000493919	P2RY8	Q86VZ1	359 aa		10.62	□□□□□ -0.71
BRCA1-222	ENST00000493919	C10orf107	Q8IVU9	208 aa		10.62	□□□□□ -0.71
BRCA1-222	ENST00000493919	OR52N4	Q8NGI2	321 aa		10.62	□□□□□ -0.71
BRCA1-222	ENST00000493919	OR4Q3	Q8NH05	313 aa		10.62	□□□□□ -0.71
BRCA1-222	ENST00000493919	THAP3	Q8WTV1	239 aa	Predicted RBP	10.62	□□□□□ -0.71
BRCA1-222	ENST00000493919	ZNF480	Q8WV37	535 aa		10.62	□□□□□ -0.71
BRCA1-222	ENST00000493919	MRPS24	Q96EL2	167 aa	Known RBP	10.62	□□□□□ -0.71
BRCA1-222	ENST00000493919	EGFL8	Q99944	293 aa		10.62	□□□□□ -0.71
BRCA1-222	ENST00000493919	ZNF426	Q9BUY5	554 aa		10.62	□□□□□ -0.71
BRCA1-222	ENST00000493919	BEX2	Q9BXY8	128 aa		10.62	□□□□□ -0.71
BRCA1-222	ENST00000493919	CCNB1IP1	Q9NPC3	277 aa		10.62	□□□□□ -0.71
BRCA1-222	ENST00000493919	C1GALT1	Q9NS00	363 aa		10.62	□□□□□ -0.71
BRCA1-222	ENST00000493919	PDP1	Q9P0J1	537 aa	Predicted RBP	10.62	□□□□□ -0.71
BRCA1-222	ENST00000493919	PEF1	Q9UBV8	284 aa	Known RBP	10.62	□□□□□ -0.71
BRCA1-222	ENST00000493919	TAC3	Q9UHF0	121 aa		10.62	□□□□□ -0.71
BRCA1-222	ENST00000493919	DKKL1	Q9UK85	242 aa		10.62	□□□□□ -0.71
BRCA1-222	ENST00000493919	SNRNP200	O75643	2136 aa	Known RBP	10.61	□□□□□ -0.71
BRCA1-222	ENST00000493919		A0A096LPK6	155 aa		10.61	□□□□□ -0.71
BRCA1-222	ENST00000493919		B4DXG7	233 aa		10.61	□□□□□ -0.71
BRCA1-222	ENST00000493919	SLC16A5	O15375	505 aa		10.61	□□□□□ -0.71
BRCA1-222	ENST00000493919	RNF13	O43567	381 aa		10.61	□□□□□ -0.71
BRCA1-222	ENST00000493919	XPNPEP2	O43895	674 aa		10.61	□□□□□ -0.71
BRCA1-222	ENST00000493919	WISP3	O95389	354 aa	Predicted RBP	10.61	□□□□□ -0.71
BRCA1-222	ENST00000493919	IGF2	P01344	180 aa		10.61	□□□□□ -0.71
BRCA1-222	ENST00000493919	EBLN1	P0CF75	366 aa		10.61	□□□□□ -0.71
BRCA1-222	ENST00000493919	FGF3	P11487	239 aa	Predicted RBP	10.61	□□□□□ -0.71
BRCA1-222	ENST00000493919	TSPAN8	P19075	237 aa		10.61	□□□□□ -0.71
BRCA1-222	ENST00000493919	CNR1	P21554	472 aa		10.61	□□□□□ -0.71
BRCA1-222	ENST00000493919	C21orf33	P30042	268 aa	Predicted RBP	10.61	□□□□□ -0.71
BRCA1-222	ENST00000493919	ARR3	P36575	388 aa		10.61	□□□□□ -0.71
BRCA1-222	ENST00000493919	LSS	P48449	732 aa		10.61	□□□□□ -0.71
BRCA1-222	ENST00000493919	RORC	P51449	518 aa		10.61	□□□□□ -0.71
BRCA1-222	ENST00000493919	DNAJB13	P59910	316 aa		10.61	□□□□□ -0.71
BRCA1-222	ENST00000493919	ARF3	P61204	181 aa	Predicted RBP	10.61	□□□□□ -0.71
BRCA1-222	ENST00000493919	TBPL1	P62380	186 aa		10.61	□□□□□ -0.71
BRCA1-222	ENST00000493919	ARF1	P84077	181 aa	Known RBP	10.61	□□□□□ -0.71
BRCA1-222	ENST00000493919	SLC22A25	Q6T423	547 aa		10.61	□□□□□ -0.71
BRCA1-222	ENST00000493919	DHRSX	Q8N5I4	330 aa		10.61	□□□□□ -0.71
BRCA1-222	ENST00000493919	C19orf47	Q8N9M1	422 aa	Known RBP	10.61	□□□□□ -0.71
BRCA1-222	ENST00000493919	NANOS1	Q8WY41	292 aa	Known RBP	10.61	□□□□□ -0.71
BRCA1-222	ENST00000493919	OSTF1	Q92882	214 aa		10.61	□□□□□ -0.71
BRCA1-222	ENST00000493919	NEDD4L	Q96PU5	975 aa		10.61	□□□□□ -0.71
BRCA1-222	ENST00000493919	OR6C1	Q96RD1	312 aa		10.61	□□□□□ -0.71
BRCA1-222	ENST00000493919	ATG10	Q9H0Y0	220 aa		10.61	□□□□□ -0.71
BRCA1-222	ENST00000493919	SLAMF7	Q9NQ25	335 aa		10.61	□□□□□ -0.71
BRCA1-222	ENST00000493919	STOX2	Q9P2F5	926 aa	Predicted RBP	10.61	□□□□□ -0.71

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