RNA–Protein interactions for RNA: ENST00000486618.1

HDAC3-209, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 711 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-209ENST00000486618 UBQLN2Q9UHD9 624 aa6.12□□□□□ -1.43
HDAC3-209ENST00000486618 ENOPH1Q9UHY7 261 aa6.12□□□□□ -1.43
HDAC3-209ENST00000486618 ZNF223Q9UK11 482 aaPredicted RBP6.12□□□□□ -1.43
HDAC3-209ENST00000486618 BOKQ9UMX3 212 aaPredicted RBP6.12□□□□□ -1.43
HDAC3-209ENST00000486618 SLC12A4Q9UP95 1085 aa6.12□□□□□ -1.43
HDAC3-209ENST00000486618 SH2B3Q9UQQ2 575 aa6.12□□□□□ -1.43
HDAC3-209ENST00000486618 NOX1Q9Y5S8 564 aa6.12□□□□□ -1.43
HDAC3-209ENST00000486618 FAM90A20PA6NIJ5 464 aa6.11□□□□□ -1.43
HDAC3-209ENST00000486618 PCP4L1A6NKN8 68 aa6.11□□□□□ -1.43
HDAC3-209ENST00000486618 SMIM23A6NLE4 172 aa6.11□□□□□ -1.43
HDAC3-209ENST00000486618 WASHC1A8K0Z3 465 aa6.11□□□□□ -1.43
HDAC3-209ENST00000486618 BTNL10A8MVZ5 291 aa6.11□□□□□ -1.43
HDAC3-209ENST00000486618 TMEM114B3SHH9 223 aa6.11□□□□□ -1.43
HDAC3-209ENST00000486618 TOR1AO14656 332 aa6.11□□□□□ -1.43
HDAC3-209ENST00000486618 LIASO43766 372 aa6.11□□□□□ -1.43
HDAC3-209ENST00000486618 PRKNO60260 465 aaPredicted RBP6.11□□□□□ -1.43
HDAC3-209ENST00000486618 SAP30O75446 220 aa6.11□□□□□ -1.43
HDAC3-209ENST00000486618 STX11O75558 287 aa6.11□□□□□ -1.43
HDAC3-209ENST00000486618 AHSGP02765 367 aa6.11□□□□□ -1.43
HDAC3-209ENST00000486618 IFNA16P05015 189 aa6.11□□□□□ -1.43
HDAC3-209ENST00000486618 FCER2P06734 321 aa6.11□□□□□ -1.43
HDAC3-209ENST00000486618 C8BP07358 591 aa6.11□□□□□ -1.43
HDAC3-209ENST00000486618 GFAPP14136 432 aa6.11□□□□□ -1.43
HDAC3-209ENST00000486618 HOXA5P20719 270 aa6.11□□□□□ -1.43
HDAC3-209ENST00000486618 MGAT1P26572 445 aa6.11□□□□□ -1.43
HDAC3-209ENST00000486618 GSTM2P28161 218 aa6.11□□□□□ -1.43
HDAC3-209ENST00000486618 OPRM1P35372 400 aa6.11□□□□□ -1.43
HDAC3-209ENST00000486618 RPS5P46782 204 aaKnown RBP6.11□□□□□ -1.43
HDAC3-209ENST00000486618 ALDH3B2P48448 385 aa6.11□□□□□ -1.43
HDAC3-209ENST00000486618 CLK3P49761 638 aaKnown RBP6.11□□□□□ -1.43
HDAC3-209ENST00000486618 PRKAG1P54619 331 aa6.11□□□□□ -1.43
HDAC3-209ENST00000486618 RGS8P57771 180 aaPredicted RBP6.11□□□□□ -1.43
HDAC3-209ENST00000486618 AP3S2P59780 193 aa6.11□□□□□ -1.43
HDAC3-209ENST00000486618 KCNJ2P63252 427 aa6.11□□□□□ -1.43
HDAC3-209ENST00000486618 CSNK2A1P68400 391 aaPredicted RBP6.11□□□□□ -1.43
HDAC3-209ENST00000486618 CDK16Q00536 496 aa6.11□□□□□ -1.43
HDAC3-209ENST00000486618 KLF10Q13118 480 aa6.11□□□□□ -1.43
HDAC3-209ENST00000486618 GALNTL6Q49A17 601 aa6.11□□□□□ -1.43
HDAC3-209ENST00000486618 COQ5Q5HYK3 327 aa6.11□□□□□ -1.43
HDAC3-209ENST00000486618 PRAMEF8Q5VWM4 474 aa6.11□□□□□ -1.43
HDAC3-209ENST00000486618 SLC22A10Q63ZE4 541 aa6.11□□□□□ -1.43
HDAC3-209ENST00000486618 C16orf47Q6ZP98 133 aaPredicted RBP6.11□□□□□ -1.43
HDAC3-209ENST00000486618 SEM1Q6ZVN7 128 aa6.11□□□□□ -1.43
HDAC3-209ENST00000486618 SMIM15Q7Z3B0 74 aa6.11□□□□□ -1.43
HDAC3-209ENST00000486618 PIWIL4Q7Z3Z4 852 aaKnown RBP6.11□□□□□ -1.43
HDAC3-209ENST00000486618 LHFPL3Q86UP9 236 aa6.11□□□□□ -1.43
HDAC3-209ENST00000486618 CCDC28AQ8IWP9 274 aa6.11□□□□□ -1.43
HDAC3-209ENST00000486618 ZNF595Q8IYB9 648 aa6.11□□□□□ -1.43
HDAC3-209ENST00000486618 CPNE9Q8IYJ1 553 aa6.11□□□□□ -1.43
HDAC3-209ENST00000486618 MICU2Q8IYU8 434 aa6.11□□□□□ -1.43
HDAC3-209ENST00000486618 CDK20Q8IZL9 346 aa6.11□□□□□ -1.43
HDAC3-209ENST00000486618 CA13Q8N1Q1 262 aa6.11□□□□□ -1.43
HDAC3-209ENST00000486618 C17orf78Q8N4C9 275 aa6.11□□□□□ -1.43
HDAC3-209ENST00000486618 LRRC17Q8N6Y2 441 aa6.11□□□□□ -1.43
HDAC3-209ENST00000486618 MORN4Q8NDC4 146 aa6.11□□□□□ -1.43
HDAC3-209ENST00000486618 CSNK2A3Q8NEV1 391 aa6.11□□□□□ -1.43
HDAC3-209ENST00000486618 TSPAN14Q8NG11 270 aa6.11□□□□□ -1.43
HDAC3-209ENST00000486618 OR14A16Q8NHC5 309 aa6.11□□□□□ -1.43
HDAC3-209ENST00000486618 RP9Q8TA86 221 aaKnown RBP6.11□□□□□ -1.43
HDAC3-209ENST00000486618 NEIL3Q8TAT5 605 aa6.11□□□□□ -1.43
HDAC3-209ENST00000486618 WDR60Q8WVS4 1066 aa6.11□□□□□ -1.43
HDAC3-209ENST00000486618 ATG4AQ8WYN0 398 aa6.11□□□□□ -1.43
HDAC3-209ENST00000486618 ROBO4Q8WZ75 1007 aa6.11□□□□□ -1.43
HDAC3-209ENST00000486618 SMPDL3BQ92485 455 aa6.11□□□□□ -1.43
HDAC3-209ENST00000486618 PHYHIPQ92561 330 aa6.11□□□□□ -1.43
HDAC3-209ENST00000486618 FIG4Q92562 907 aa6.11□□□□□ -1.43
HDAC3-209ENST00000486618 RAB24Q969Q5 203 aa6.11□□□□□ -1.43
HDAC3-209ENST00000486618 NUDT11Q96G61 164 aa6.11□□□□□ -1.43
HDAC3-209ENST00000486618 C20orf173Q96LM9 149 aa6.11□□□□□ -1.43
HDAC3-209ENST00000486618 Q96MF0 132 aa6.11□□□□□ -1.43
HDAC3-209ENST00000486618 LRRC37BQ96QE4 947 aa6.11□□□□□ -1.43
HDAC3-209ENST00000486618 GPR21Q99679 349 aa6.11□□□□□ -1.43
HDAC3-209ENST00000486618 AIF1LQ9BQI0 150 aa6.11□□□□□ -1.43
HDAC3-209ENST00000486618 SRSF8Q9BRL6 282 aaKnown RBP6.11□□□□□ -1.43
HDAC3-209ENST00000486618 NPLQ9BXD5 320 aaPredicted RBP6.11□□□□□ -1.43
HDAC3-209ENST00000486618 ANKRD60Q9BZ19 345 aa6.11□□□□□ -1.43
HDAC3-209ENST00000486618 TOLLIPQ9H0E2 274 aa6.11□□□□□ -1.43
HDAC3-209ENST00000486618 ZCCHC4Q9H5U6 513 aa6.11□□□□□ -1.43
HDAC3-209ENST00000486618 VCX3AQ9NNX9 186 aa6.11□□□□□ -1.43
HDAC3-209ENST00000486618 CCNB1IP1Q9NPC3 277 aa6.11□□□□□ -1.43
HDAC3-209ENST00000486618 PARPBPQ9NWS1 579 aa6.11□□□□□ -1.43
HDAC3-209ENST00000486618 SPRR3Q9UBC9 169 aa6.11□□□□□ -1.43
HDAC3-209ENST00000486618 HEY2Q9UBP5 337 aa6.11□□□□□ -1.43
HDAC3-209ENST00000486618 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP6.11□□□□□ -1.43
HDAC3-209ENST00000486618 PDE10AQ9Y233 779 aa6.11□□□□□ -1.43
HDAC3-209ENST00000486618 ATG4BQ9Y4P1 393 aa6.11□□□□□ -1.43
HDAC3-209ENST00000486618 ROS1P08922 2347 aa6.1□□□□□ -1.43
HDAC3-209ENST00000486618 GNG14A0A1W2PPG7 69 aa6.1□□□□□ -1.43
HDAC3-209ENST00000486618 TCRBV7S2A1N4TA0A589 114 aa6.1□□□□□ -1.43
HDAC3-209ENST00000486618 PLSCR5A0PG75 271 aa6.1□□□□□ -1.43
HDAC3-209ENST00000486618 GRID2IPA4D2P6 1211 aa6.1□□□□□ -1.43
HDAC3-209ENST00000486618 SH2D7A6NKC9 451 aaPredicted RBP6.1□□□□□ -1.43
HDAC3-209ENST00000486618 RNF212BA8MTL3 300 aa6.1□□□□□ -1.43
HDAC3-209ENST00000486618 EEF1E1-BLOC1S5C9J1V9 151 aa6.1□□□□□ -1.43
HDAC3-209ENST00000486618 ZNF561-AS1K7EIQ3 104 aa6.1□□□□□ -1.43
HDAC3-209ENST00000486618 ST8SIA3O43173 380 aa6.1□□□□□ -1.43
HDAC3-209ENST00000486618 EEF1E1O43324 174 aaKnown RBP6.1□□□□□ -1.43
HDAC3-209ENST00000486618 GLRA3O75311 464 aa6.1□□□□□ -1.43
HDAC3-209ENST00000486618 CRLF1O75462 422 aa6.1□□□□□ -1.43
HDAC3-209ENST00000486618 IL18BPO95998 194 aa6.1□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms