RNA–Protein interactions for RNA: ENST00000485943.1

USP40-216, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 568 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-216ENST00000485943 NUFIP2Q7Z417 695 aaKnown RBP7.14□□□□□ -1.27
USP40-216ENST00000485943 CXorf67Q86X51 503 aaPredicted RBP7.14□□□□□ -1.27
USP40-216ENST00000485943 CALHM3Q86XJ0 350 aa7.14□□□□□ -1.27
USP40-216ENST00000485943 P3H2Q8IVL5 708 aa7.14□□□□□ -1.27
USP40-216ENST00000485943 TMEM99Q8N816 258 aa7.14□□□□□ -1.27
USP40-216ENST00000485943 FAM169BQ8N8A8 192 aa7.14□□□□□ -1.27
USP40-216ENST00000485943 POMGNT2Q8NAT1 580 aa7.14□□□□□ -1.27
USP40-216ENST00000485943 PIK3C3Q8NEB9 887 aa7.14□□□□□ -1.27
USP40-216ENST00000485943 UBASH3BQ8TF42 649 aa7.14□□□□□ -1.27
USP40-216ENST00000485943 TMEM239Q8WW34 195 aa7.14□□□□□ -1.27
USP40-216ENST00000485943 CCDC124Q96CT7 223 aaKnown RBP7.14□□□□□ -1.27
USP40-216ENST00000485943 KTI12Q96EK9 354 aaPredicted RBP7.14□□□□□ -1.27
USP40-216ENST00000485943 SGTBQ96EQ0 304 aa7.14□□□□□ -1.27
USP40-216ENST00000485943 PLPPR2Q96GM1 343 aa7.14□□□□□ -1.27
USP40-216ENST00000485943 PRRC1Q96M27 445 aa7.14□□□□□ -1.27
USP40-216ENST00000485943 OXGR1Q96P68 337 aa7.14□□□□□ -1.27
USP40-216ENST00000485943 GPATCH1Q9BRR8 931 aaKnown RBP7.14□□□□□ -1.27
USP40-216ENST00000485943 TMEM43Q9BTV4 400 aa7.14□□□□□ -1.27
USP40-216ENST00000485943 SLC19A3Q9BZV2 496 aa7.14□□□□□ -1.27
USP40-216ENST00000485943 KCNN2Q9H2S1 579 aa7.14□□□□□ -1.27
USP40-216ENST00000485943 SLCO5A1Q9H2Y9 848 aa7.14□□□□□ -1.27
USP40-216ENST00000485943 ESRP2Q9H6T0 727 aaKnown RBP7.14□□□□□ -1.27
USP40-216ENST00000485943 BCO1Q9HAY6 547 aa7.14□□□□□ -1.27
USP40-216ENST00000485943 PKDREJQ9NTG1 2253 aa7.14□□□□□ -1.27
USP40-216ENST00000485943 ARL8BQ9NVJ2 186 aa7.14□□□□□ -1.27
USP40-216ENST00000485943 STX18Q9P2W9 335 aaKnown RBP7.14□□□□□ -1.27
USP40-216ENST00000485943 RIMS3Q9UJD0 308 aa7.14□□□□□ -1.27
USP40-216ENST00000485943 ITGB1BP2Q9UKP3 347 aa7.14□□□□□ -1.27
USP40-216ENST00000485943 USP22Q9UPT9 525 aa7.14□□□□□ -1.27
USP40-216ENST00000485943 NOX1Q9Y5S8 564 aa7.14□□□□□ -1.27
USP40-216ENST00000485943 SNX13Q9Y5W8 968 aa7.14□□□□□ -1.27
USP40-216ENST00000485943 SPENQ96T58 3664 aaKnown RBP7.13□□□□□ -1.27
USP40-216ENST00000485943 A6NNC1 897 aa7.13□□□□□ -1.27
USP40-216ENST00000485943 ENO4A6NNW6 628 aa7.13□□□□□ -1.27
USP40-216ENST00000485943 CLOCKO15516 846 aa7.13□□□□□ -1.27
USP40-216ENST00000485943 KLF4O43474 513 aa7.13□□□□□ -1.27
USP40-216ENST00000485943 RAD51DO75771 328 aa7.13□□□□□ -1.27
USP40-216ENST00000485943 CIB2O75838 187 aa7.13□□□□□ -1.27
USP40-216ENST00000485943 ATP5HO75947 161 aa7.13□□□□□ -1.27
USP40-216ENST00000485943 LYZL6O75951 148 aa7.13□□□□□ -1.27
USP40-216ENST00000485943 GOSR1O95249 250 aa7.13□□□□□ -1.27
USP40-216ENST00000485943 CNOT4O95628 575 aaKnown RBP7.13□□□□□ -1.27
USP40-216ENST00000485943 BCL10O95999 233 aa7.13□□□□□ -1.27
USP40-216ENST00000485943 FABP3P05413 133 aa7.13□□□□□ -1.27
USP40-216ENST00000485943 THRBP10828 461 aa7.13□□□□□ -1.27
USP40-216ENST00000485943 IFI30P13284 250 aa7.13□□□□□ -1.27
USP40-216ENST00000485943 DNASE1P24855 282 aa7.13□□□□□ -1.27
USP40-216ENST00000485943 HTR2AP28223 471 aa7.13□□□□□ -1.27
USP40-216ENST00000485943 RRM2P31350 389 aa7.13□□□□□ -1.27
USP40-216ENST00000485943 RBM34P42696 430 aaKnown RBP7.13□□□□□ -1.27
USP40-216ENST00000485943 OR3A2P47893 321 aa7.13□□□□□ -1.27
USP40-216ENST00000485943 GIPRP48546 466 aa7.13□□□□□ -1.27
USP40-216ENST00000485943 NR1H2P55055 460 aa7.13□□□□□ -1.27
USP40-216ENST00000485943 CLRN1P58418 232 aa7.13□□□□□ -1.27
USP40-216ENST00000485943 CHRNB3Q05901 458 aa7.13□□□□□ -1.27
USP40-216ENST00000485943 PUDPQ08623 228 aa7.13□□□□□ -1.27
USP40-216ENST00000485943 PIN1Q13526 163 aaPredicted RBP7.13□□□□□ -1.27
USP40-216ENST00000485943 MTX3Q5HYI7 312 aa7.13□□□□□ -1.27
USP40-216ENST00000485943 ABLIM2Q6H8Q1 611 aa7.13□□□□□ -1.27
USP40-216ENST00000485943 TFAP2EQ6VUC0 442 aa7.13□□□□□ -1.27
USP40-216ENST00000485943 Q6ZT83 130 aa7.13□□□□□ -1.27
USP40-216ENST00000485943 CBLL1Q75N03 491 aa7.13□□□□□ -1.27
USP40-216ENST00000485943 DHFR2Q86XF0 187 aa7.13□□□□□ -1.27
USP40-216ENST00000485943 FITM2Q8N6M3 262 aa7.13□□□□□ -1.27
USP40-216ENST00000485943 OR5J2Q8NH18 312 aa7.13□□□□□ -1.27
USP40-216ENST00000485943 HSD17B8Q92506 261 aa7.13□□□□□ -1.27
USP40-216ENST00000485943 ANAPC16Q96DE5 110 aa7.13□□□□□ -1.27
USP40-216ENST00000485943 C14orf79Q96F83 325 aa7.13□□□□□ -1.27
USP40-216ENST00000485943 RSRC1Q96IZ7 334 aaKnown RBP7.13□□□□□ -1.27
USP40-216ENST00000485943 SEPHS2Q99611 448 aa7.13□□□□□ -1.27
USP40-216ENST00000485943 THTPAQ9BU02 230 aa7.13□□□□□ -1.27
USP40-216ENST00000485943 MUC13Q9H3R2 512 aa7.13□□□□□ -1.27
USP40-216ENST00000485943 YY1AP1Q9H869 796 aa7.13□□□□□ -1.27
USP40-216ENST00000485943 FKRPQ9H9S5 495 aa7.13□□□□□ -1.27
USP40-216ENST00000485943 UBTD1Q9HAC8 227 aa7.13□□□□□ -1.27
USP40-216ENST00000485943 TAS2R16Q9NYV7 291 aa7.13□□□□□ -1.27
USP40-216ENST00000485943 PRPF19Q9UMS4 504 aaKnown RBP7.13□□□□□ -1.27
USP40-216ENST00000485943 TMEM5Q9Y2B1 443 aa7.13□□□□□ -1.27
USP40-216ENST00000485943 POFUT2Q9Y2G5 429 aa7.13□□□□□ -1.27
USP40-216ENST00000485943 MAGED1Q9Y5V3 778 aaPredicted RBP7.13□□□□□ -1.27
USP40-216ENST00000485943 COL12A1Q99715 3063 aa7.13□□□□□ -1.27
USP40-216ENST00000485943 DOPEY1Q5JWR5 2465 aa7.12□□□□□ -1.27
USP40-216ENST00000485943 RELNP78509 3460 aa7.12□□□□□ -1.27
USP40-216ENST00000485943 VSTM5A8MXK1 200 aa7.12□□□□□ -1.27
USP40-216ENST00000485943 EFCAB9A8MZ26 197 aa7.12□□□□□ -1.27
USP40-216ENST00000485943 hCG_2039718K7EN88 272 aa7.12□□□□□ -1.27
USP40-216ENST00000485943 XKRYO14609 159 aa7.12□□□□□ -1.27
USP40-216ENST00000485943 GADD45GO95257 159 aa7.12□□□□□ -1.27
USP40-216ENST00000485943 FARS2O95363 451 aaKnown RBP7.12□□□□□ -1.27
USP40-216ENST00000485943 MT-ND1P03886 318 aa7.12□□□□□ -1.27
USP40-216ENST00000485943 H1F0P07305 194 aaKnown RBP7.12□□□□□ -1.27
USP40-216ENST00000485943 CD3EP07766 207 aa7.12□□□□□ -1.27
USP40-216ENST00000485943 HSD17B1P14061 328 aa7.12□□□□□ -1.27
USP40-216ENST00000485943 RHCEP18577 417 aa7.12□□□□□ -1.27
USP40-216ENST00000485943 LORP23490 312 aaPredicted RBP7.12□□□□□ -1.27
USP40-216ENST00000485943 DAP3P51398 398 aaKnown RBP7.12□□□□□ -1.27
USP40-216ENST00000485943 ZNF84P51523 738 aa7.12□□□□□ -1.27
USP40-216ENST00000485943 ARHGDIAP52565 204 aa7.12□□□□□ -1.27
USP40-216ENST00000485943 DLX5P56178 289 aa7.12□□□□□ -1.27
USP40-216ENST00000485943 TFF3Q07654 80 aa7.12□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 50.2 ms