RNA–Protein interactions for RNA: ENST00000484954.1

VPS50-216, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 4

Gene VPS50, Length 594 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-216ENST00000484954 CTPS2Q9NRF8 586 aa1.41□□□□□ -2.18
VPS50-216ENST00000484954 ZNF355PQ9NSJ1 428 aa1.41□□□□□ -2.18
VPS50-216ENST00000484954 ZNF229Q9UJW7 825 aa1.41□□□□□ -2.18
VPS50-216ENST00000484954 NPIPA1Q9UND3 350 aa1.41□□□□□ -2.18
VPS50-216ENST00000484954 CHMP2BQ9UQN3 213 aa1.41□□□□□ -2.18
VPS50-216ENST00000484954 RFNGQ9Y644 331 aa1.41□□□□□ -2.18
VPS50-216ENST00000484954 IGHV5-51A0A0C4DH38 117 aa1.4□□□□□ -2.19
VPS50-216ENST00000484954 A0A1W2PNV4 684 aa1.4□□□□□ -2.19
VPS50-216ENST00000484954 A0A1W2PP18 115 aa1.4□□□□□ -2.19
VPS50-216ENST00000484954 LRP5LA4QPB2 252 aa1.4□□□□□ -2.19
VPS50-216ENST00000484954 LOC110117498-PIK3R3F6TDL0 507 aa1.4□□□□□ -2.19
VPS50-216ENST00000484954 SCGB2A1O75556 95 aa1.4□□□□□ -2.19
VPS50-216ENST00000484954 BGLAPP02818 100 aa1.4□□□□□ -2.19
VPS50-216ENST00000484954 LINC00869P0C866 280 aa1.4□□□□□ -2.19
VPS50-216ENST00000484954 IGHV3-43DP0DP04 118 aa1.4□□□□□ -2.19
VPS50-216ENST00000484954 HPGDP15428 266 aa1.4□□□□□ -2.19
VPS50-216ENST00000484954 OMGP23515 440 aa1.4□□□□□ -2.19
VPS50-216ENST00000484954 DDOSTP39656 456 aa1.4□□□□□ -2.19
VPS50-216ENST00000484954 NCBP2P52298 156 aaKnown RBP eCLIP1.4□□□□□ -2.19
VPS50-216ENST00000484954 SYCNQ0VAF6 134 aa1.4□□□□□ -2.19
VPS50-216ENST00000484954 ZNF684Q5T5D7 378 aa1.4□□□□□ -2.19
VPS50-216ENST00000484954 CES3Q6UWW8 571 aa1.4□□□□□ -2.19
VPS50-216ENST00000484954 LINC00173Q6ZV60 143 aa1.4□□□□□ -2.19
VPS50-216ENST00000484954 NCCRP1Q6ZVX7 275 aaPredicted RBP1.4□□□□□ -2.19
VPS50-216ENST00000484954 MOB3BQ86TA1 216 aa1.4□□□□□ -2.19
VPS50-216ENST00000484954 HDDC3Q8N4P3 179 aa1.4□□□□□ -2.19
VPS50-216ENST00000484954 RAET1EQ8TD07 263 aa1.4□□□□□ -2.19
VPS50-216ENST00000484954 OSTF1Q92882 214 aa1.4□□□□□ -2.19
VPS50-216ENST00000484954 PELI1Q96FA3 418 aa1.4□□□□□ -2.19
VPS50-216ENST00000484954 PDXPQ96GD0 296 aa1.4□□□□□ -2.19
VPS50-216ENST00000484954 AURKBQ96GD4 344 aaPredicted RBP1.4□□□□□ -2.19
VPS50-216ENST00000484954 WFIKKN1Q96NZ8 548 aa1.4□□□□□ -2.19
VPS50-216ENST00000484954 KCNK16Q96T55 309 aa1.4□□□□□ -2.19
VPS50-216ENST00000484954 CHAC1Q9BUX1 264 aa1.4□□□□□ -2.19
VPS50-216ENST00000484954 KCNIP1Q9NZI2 227 aa1.4□□□□□ -2.19
VPS50-216ENST00000484954 RPL36Q9Y3U8 105 aaKnown RBP1.4□□□□□ -2.19
VPS50-216ENST00000484954 OTOGLQ3ZCN5 2332 aa1.39□□□□□ -2.19
VPS50-216ENST00000484954 KDRP35968 1356 aa1.39□□□□□ -2.19
VPS50-216ENST00000484954 IGHV3-66A0A0C4DH42 116 aa1.39□□□□□ -2.19
VPS50-216ENST00000484954 A8MUU9 505 aa1.39□□□□□ -2.19
VPS50-216ENST00000484954 INS-IGF2F8WCM5 200 aa1.39□□□□□ -2.19
VPS50-216ENST00000484954 SEC22BO75396 215 aa1.39□□□□□ -2.19
VPS50-216ENST00000484954 GKN3PP0CG01 181 aa1.39□□□□□ -2.19
VPS50-216ENST00000484954 PNMTP11086 282 aa1.39□□□□□ -2.19
VPS50-216ENST00000484954 PSMC3P17980 439 aa1.39□□□□□ -2.19
VPS50-216ENST00000484954 CD34P28906 385 aa1.39□□□□□ -2.19
VPS50-216ENST00000484954 MAP3K8P41279 467 aa1.39□□□□□ -2.19
VPS50-216ENST00000484954 TDO2P48775 406 aa1.39□□□□□ -2.19
VPS50-216ENST00000484954 PDZK1IP1Q13113 114 aa1.39□□□□□ -2.19
VPS50-216ENST00000484954 CDC37Q16543 378 aaPredicted RBP1.39□□□□□ -2.19
VPS50-216ENST00000484954 RAET1LQ5VY80 246 aa1.39□□□□□ -2.19
VPS50-216ENST00000484954 PYHIN1Q6K0P9 492 aa1.39□□□□□ -2.19
VPS50-216ENST00000484954 AFTPHQ6ULP2 937 aa1.39□□□□□ -2.19
VPS50-216ENST00000484954 RIMKLAQ8IXN7 391 aa1.39□□□□□ -2.19
VPS50-216ENST00000484954 SLC38A6Q8IZM9 456 aa1.39□□□□□ -2.19
VPS50-216ENST00000484954 CNNM3Q8NE01 707 aa1.39□□□□□ -2.19
VPS50-216ENST00000484954 OR1N2Q8NGR9 330 aa1.39□□□□□ -2.19
VPS50-216ENST00000484954 OR1F12Q8NHA8 337 aa1.39□□□□□ -2.19
VPS50-216ENST00000484954 SPRYD4Q8WW59 207 aaPredicted RBP1.39□□□□□ -2.19
VPS50-216ENST00000484954 FGF14Q92915 247 aa1.39□□□□□ -2.19
VPS50-216ENST00000484954 AMDHD1Q96NU7 426 aa1.39□□□□□ -2.19
VPS50-216ENST00000484954 OXGR1Q96P68 337 aa1.39□□□□□ -2.19
VPS50-216ENST00000484954 RPP21Q9H633 154 aaKnown RBP1.39□□□□□ -2.19
VPS50-216ENST00000484954 IL26Q9NPH9 171 aa1.39□□□□□ -2.19
VPS50-216ENST00000484954 THUMPD1Q9NXG2 353 aaKnown RBP1.39□□□□□ -2.19
VPS50-216ENST00000484954 XCL2Q9UBD3 114 aa1.39□□□□□ -2.19
VPS50-216ENST00000484954 MRPS33Q9Y291 106 aaKnown RBP1.39□□□□□ -2.19
VPS50-216ENST00000484954 GPRASP1Q5JY77 1395 aa1.38□□□□□ -2.19
VPS50-216ENST00000484954 RGS16O15492 202 aaPredicted RBP1.38□□□□□ -2.19
VPS50-216ENST00000484954 RRP8O43159 456 aaKnown RBP1.38□□□□□ -2.19
VPS50-216ENST00000484954 CSF3P09919 207 aa1.38□□□□□ -2.19
VPS50-216ENST00000484954 ZDHHC11BP0C7U3 371 aa1.38□□□□□ -2.19
VPS50-216ENST00000484954 PRPS2P11908 318 aa1.38□□□□□ -2.19
VPS50-216ENST00000484954 STMN1P16949 149 aa1.38□□□□□ -2.19
VPS50-216ENST00000484954 TNNI3P19429 210 aa1.38□□□□□ -2.19
VPS50-216ENST00000484954 TCN2P20062 427 aa1.38□□□□□ -2.19
VPS50-216ENST00000484954 IL10P22301 178 aa1.38□□□□□ -2.19
VPS50-216ENST00000484954 CMA1P23946 247 aa1.38□□□□□ -2.19
VPS50-216ENST00000484954 CCND2P30279 289 aa1.38□□□□□ -2.19
VPS50-216ENST00000484954 SOX6P35712 828 aa1.38□□□□□ -2.19
VPS50-216ENST00000484954 BPIFB3P59826 476 aa1.38□□□□□ -2.19
VPS50-216ENST00000484954 GMFBP60983 142 aa1.38□□□□□ -2.19
VPS50-216ENST00000484954 C1orf61Q13536 156 aa1.38□□□□□ -2.19
VPS50-216ENST00000484954 VGLL4Q14135 290 aa1.38□□□□□ -2.19
VPS50-216ENST00000484954 WDR86Q86TI4 376 aa1.38□□□□□ -2.19
VPS50-216ENST00000484954 TRIM69Q86WT6 500 aa1.38□□□□□ -2.19
VPS50-216ENST00000484954 ZADH2Q8N4Q0 377 aa1.38□□□□□ -2.19
VPS50-216ENST00000484954 SH3YL1Q96HL8 342 aaPredicted RBP1.38□□□□□ -2.19
VPS50-216ENST00000484954 SECISBP2Q96T21 854 aaKnown RBP1.38□□□□□ -2.19
VPS50-216ENST00000484954 RNF2Q99496 336 aa1.38□□□□□ -2.19
VPS50-216ENST00000484954 REEP4Q9H6H4 257 aa1.38□□□□□ -2.19
VPS50-216ENST00000484954 UGT1A7Q9HAW7 530 aa1.38□□□□□ -2.19
VPS50-216ENST00000484954 UGT1A10Q9HAW8 530 aa1.38□□□□□ -2.19
VPS50-216ENST00000484954 UGT1A8Q9HAW9 530 aa1.38□□□□□ -2.19
VPS50-216ENST00000484954 C12orf10Q9HB07 376 aa1.38□□□□□ -2.19
VPS50-216ENST00000484954 TM9SF3Q9HD45 589 aa1.38□□□□□ -2.19
VPS50-216ENST00000484954 GLRX2Q9NS18 164 aa1.38□□□□□ -2.19
VPS50-216ENST00000484954 CALYQ9NYX4 217 aa1.38□□□□□ -2.19
VPS50-216ENST00000484954 SPATA7Q9P0W8 599 aa1.38□□□□□ -2.19
VPS50-216ENST00000484954 MMP17Q9ULZ9 603 aa1.38□□□□□ -2.19
Retrieved 100 of 20,778 RNA–protein pairs in 92.8 ms