RNA–Protein interactions for RNA: ENST00000476085.1

MSH5-SAPCD1-205, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 2

Gene MSH5-SAPCD1, Length 950 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-205ENST00000476085 A0A1W2PPZ6 126 aa10.62□□□□□ -0.71
MSH5-SAPCD1-205ENST00000476085 LOC390937A0A1W2PQ73 354 aa10.62□□□□□ -0.71
MSH5-SAPCD1-205ENST00000476085 SLC35F4A4IF30 521 aa10.62□□□□□ -0.71
MSH5-SAPCD1-205ENST00000476085 TMEM247A6NEH6 219 aa10.62□□□□□ -0.71
MSH5-SAPCD1-205ENST00000476085 RNF212BA8MTL3 300 aa10.62□□□□□ -0.71
MSH5-SAPCD1-205ENST00000476085 TRAF3IP2O43734 574 aaPredicted RBP10.62□□□□□ -0.71
MSH5-SAPCD1-205ENST00000476085 OR2T1O43869 369 aa10.62□□□□□ -0.71
MSH5-SAPCD1-205ENST00000476085 TPST1O60507 370 aa10.62□□□□□ -0.71
MSH5-SAPCD1-205ENST00000476085 KRT33AO76009 404 aa10.62□□□□□ -0.71
MSH5-SAPCD1-205ENST00000476085 TGDSO95455 350 aa10.62□□□□□ -0.71
MSH5-SAPCD1-205ENST00000476085 CRYAAP02489 173 aa10.62□□□□□ -0.71
MSH5-SAPCD1-205ENST00000476085 CELA3BP08861 270 aa10.62□□□□□ -0.71
MSH5-SAPCD1-205ENST00000476085 OR4A8P0C604 315 aa10.62□□□□□ -0.71
MSH5-SAPCD1-205ENST00000476085 ZNF43P17038 809 aa10.62□□□□□ -0.71
MSH5-SAPCD1-205ENST00000476085 GIFP27352 417 aa10.62□□□□□ -0.71
MSH5-SAPCD1-205ENST00000476085 PPOXP50336 477 aa10.62□□□□□ -0.71
MSH5-SAPCD1-205ENST00000476085 PDLIM4P50479 330 aa10.62□□□□□ -0.71
MSH5-SAPCD1-205ENST00000476085 UBE2NP61088 152 aaKnown RBP10.62□□□□□ -0.71
MSH5-SAPCD1-205ENST00000476085 TUBA1BP68363 451 aa10.62□□□□□ -0.71
MSH5-SAPCD1-205ENST00000476085 TUBA4AP68366 448 aa10.62□□□□□ -0.71
MSH5-SAPCD1-205ENST00000476085 ARF1P84077 181 aaKnown RBP10.62□□□□□ -0.71
MSH5-SAPCD1-205ENST00000476085 ADRM1Q16186 407 aa10.62□□□□□ -0.71
MSH5-SAPCD1-205ENST00000476085 GLIPR1L2Q4G1C9 344 aa10.62□□□□□ -0.71
MSH5-SAPCD1-205ENST00000476085 PAGE3Q5JUK9 113 aa10.62□□□□□ -0.71
MSH5-SAPCD1-205ENST00000476085 C6orf10Q5SRN2 563 aa10.62□□□□□ -0.71
MSH5-SAPCD1-205ENST00000476085 FAM91A1Q658Y4 838 aa10.62□□□□□ -0.71
MSH5-SAPCD1-205ENST00000476085 TUBA1AQ71U36 451 aa10.62□□□□□ -0.71
MSH5-SAPCD1-205ENST00000476085 H1FNTQ75WM6 255 aaPredicted RBP10.62□□□□□ -0.71
MSH5-SAPCD1-205ENST00000476085 NET1Q7Z628 596 aaPredicted RBP10.62□□□□□ -0.71
MSH5-SAPCD1-205ENST00000476085 WDFY1Q8IWB7 410 aa10.62□□□□□ -0.71
MSH5-SAPCD1-205ENST00000476085 DNAJA4Q8WW22 397 aaPredicted RBP10.62□□□□□ -0.71
MSH5-SAPCD1-205ENST00000476085 TMEM158Q8WZ71 300 aa10.62□□□□□ -0.71
MSH5-SAPCD1-205ENST00000476085 SLC25A36Q96CQ1 311 aa10.62□□□□□ -0.71
MSH5-SAPCD1-205ENST00000476085 MSI2Q96DH6 328 aaKnown RBP10.62□□□□□ -0.71
MSH5-SAPCD1-205ENST00000476085 C7orf26Q96N11 449 aa10.62□□□□□ -0.71
MSH5-SAPCD1-205ENST00000476085 FOXN4Q96NZ1 517 aa10.62□□□□□ -0.71
MSH5-SAPCD1-205ENST00000476085 OR2M2Q96R28 347 aa10.62□□□□□ -0.71
MSH5-SAPCD1-205ENST00000476085 WFDC6Q9BQY6 131 aa10.62□□□□□ -0.71
MSH5-SAPCD1-205ENST00000476085 TMEM38AQ9H6F2 299 aa10.62□□□□□ -0.71
MSH5-SAPCD1-205ENST00000476085 ZNF442Q9H7R0 627 aa10.62□□□□□ -0.71
MSH5-SAPCD1-205ENST00000476085 MYOZ1Q9NP98 299 aaPredicted RBP10.62□□□□□ -0.71
MSH5-SAPCD1-205ENST00000476085 VAPAQ9P0L0 249 aa10.62□□□□□ -0.71
MSH5-SAPCD1-205ENST00000476085 LPAR3Q9UBY5 353 aa10.62□□□□□ -0.71
MSH5-SAPCD1-205ENST00000476085 A0A087WUJ7 227 aa10.61□□□□□ -0.71
MSH5-SAPCD1-205ENST00000476085 IGHV2OR16-5A0A0B4J2B6 119 aa10.61□□□□□ -0.71
MSH5-SAPCD1-205ENST00000476085 IGHV4-61A0A0C4DH41 118 aa10.61□□□□□ -0.71
MSH5-SAPCD1-205ENST00000476085 M0R082 166 aa10.61□□□□□ -0.71
MSH5-SAPCD1-205ENST00000476085 AIM2O14862 343 aa10.61□□□□□ -0.71
MSH5-SAPCD1-205ENST00000476085 PHF1O43189 567 aaPredicted RBP10.61□□□□□ -0.71
MSH5-SAPCD1-205ENST00000476085 LMX1BO60663 402 aa10.61□□□□□ -0.71
MSH5-SAPCD1-205ENST00000476085 HPRP00739 348 aa10.61□□□□□ -0.71
MSH5-SAPCD1-205ENST00000476085 H2AFXP16104 143 aaPredicted RBP10.61□□□□□ -0.71
MSH5-SAPCD1-205ENST00000476085 GPX2P18283 190 aa10.61□□□□□ -0.71
MSH5-SAPCD1-205ENST00000476085 IGFBP5P24593 272 aa10.61□□□□□ -0.71
MSH5-SAPCD1-205ENST00000476085 GRPRP30550 384 aa10.61□□□□□ -0.71
MSH5-SAPCD1-205ENST00000476085 GZMKP49863 264 aa10.61□□□□□ -0.71
MSH5-SAPCD1-205ENST00000476085 SNRPD2P62316 118 aaKnown RBP10.61□□□□□ -0.71
MSH5-SAPCD1-205ENST00000476085 PHYHD1Q5SRE7 291 aa10.61□□□□□ -0.71
MSH5-SAPCD1-205ENST00000476085 REEP3Q6NUK4 255 aa10.61□□□□□ -0.71
MSH5-SAPCD1-205ENST00000476085 LINC00114Q6XXX2 140 aa10.61□□□□□ -0.71
MSH5-SAPCD1-205ENST00000476085 CCDC36Q8IYA8 594 aa10.61□□□□□ -0.71
MSH5-SAPCD1-205ENST00000476085 ARIH2OSQ8N7S6 290 aa10.61□□□□□ -0.71
MSH5-SAPCD1-205ENST00000476085 ZNF417Q8TAU3 575 aa10.61□□□□□ -0.71
MSH5-SAPCD1-205ENST00000476085 LRR1Q96L50 414 aa10.61□□□□□ -0.71
MSH5-SAPCD1-205ENST00000476085 ZNF587Q96SQ5 575 aaPredicted RBP10.61□□□□□ -0.71
MSH5-SAPCD1-205ENST00000476085 BEX2Q9BXY8 128 aa10.61□□□□□ -0.71
MSH5-SAPCD1-205ENST00000476085 IKZF5Q9H5V7 419 aa10.61□□□□□ -0.71
MSH5-SAPCD1-205ENST00000476085 CRLF2Q9HC73 371 aa10.61□□□□□ -0.71
MSH5-SAPCD1-205ENST00000476085 KLHL14Q9P2G3 628 aa10.61□□□□□ -0.71
MSH5-SAPCD1-205ENST00000476085 FBXO9Q9UK97 447 aaPredicted RBP10.61□□□□□ -0.71
MSH5-SAPCD1-205ENST00000476085 ANK2Q01484 3957 aa10.6□□□□□ -0.71
MSH5-SAPCD1-205ENST00000476085 NBEAL1Q6ZS30 2694 aa10.6□□□□□ -0.71
MSH5-SAPCD1-205ENST00000476085 TRAV36DV7A0A075B6V5 113 aa10.6□□□□□ -0.71
MSH5-SAPCD1-205ENST00000476085 A0A0B4J2E0 115 aa10.6□□□□□ -0.71
MSH5-SAPCD1-205ENST00000476085 A0A1B0GX12 115 aa10.6□□□□□ -0.71
MSH5-SAPCD1-205ENST00000476085 ZNF99A8MXY4 864 aaPredicted RBP10.6□□□□□ -0.71
MSH5-SAPCD1-205ENST00000476085 SLC43A1O75387 559 aa10.6□□□□□ -0.71
MSH5-SAPCD1-205ENST00000476085 BGLAPP02818 100 aa10.6□□□□□ -0.71
MSH5-SAPCD1-205ENST00000476085 HLA-DOBP13765 273 aa10.6□□□□□ -0.71
MSH5-SAPCD1-205ENST00000476085 ZNF16P17020 682 aaPredicted RBP10.6□□□□□ -0.71
MSH5-SAPCD1-205ENST00000476085 THBS4P35443 961 aa10.6□□□□□ -0.71
MSH5-SAPCD1-205ENST00000476085 ARR3P36575 388 aa10.6□□□□□ -0.71
MSH5-SAPCD1-205ENST00000476085 IDH3AP50213 366 aa10.6□□□□□ -0.71
MSH5-SAPCD1-205ENST00000476085 IDH3GP51553 393 aaPredicted RBP10.6□□□□□ -0.71
MSH5-SAPCD1-205ENST00000476085 CDK6Q00534 326 aa10.6□□□□□ -0.71
MSH5-SAPCD1-205ENST00000476085 POU3F1Q03052 451 aaPredicted RBP10.6□□□□□ -0.71
MSH5-SAPCD1-205ENST00000476085 CEACAM16Q2WEN9 425 aa10.6□□□□□ -0.71
MSH5-SAPCD1-205ENST00000476085 ULK3Q6PHR2 472 aa10.6□□□□□ -0.71
MSH5-SAPCD1-205ENST00000476085 DLEU7Q6UYE1 221 aa10.6□□□□□ -0.71
MSH5-SAPCD1-205ENST00000476085 C20orf196Q8IYI0 205 aa10.6□□□□□ -0.71
MSH5-SAPCD1-205ENST00000476085 ANKS4BQ8N8V4 417 aa10.6□□□□□ -0.71
MSH5-SAPCD1-205ENST00000476085 IL17RDQ8NFM7 739 aa10.6□□□□□ -0.71
MSH5-SAPCD1-205ENST00000476085 NFKBIDQ8NI38 313 aa10.6□□□□□ -0.71
MSH5-SAPCD1-205ENST00000476085 SPDL1Q96EA4 605 aa10.6□□□□□ -0.71
MSH5-SAPCD1-205ENST00000476085 ATP6V1G3Q96LB4 118 aa10.6□□□□□ -0.71
MSH5-SAPCD1-205ENST00000476085 EBF4Q9BQW3 602 aa10.6□□□□□ -0.71
MSH5-SAPCD1-205ENST00000476085 PIMREGQ9BSJ6 248 aa10.6□□□□□ -0.71
MSH5-SAPCD1-205ENST00000476085 SOX7Q9BT81 388 aa10.6□□□□□ -0.71
MSH5-SAPCD1-205ENST00000476085 CCDC28BQ9BUN5 200 aa10.6□□□□□ -0.71
MSH5-SAPCD1-205ENST00000476085 TCF7L2Q9NQB0 619 aa10.6□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms