RNA–Protein interactions for RNA: ENST00000474047.5

VAMP4-203, Transcript of vesicle associated membrane protein 4, humanhuman

TSL 1 (best)

Gene VAMP4, Length 1,738 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAMP4-203ENST00000474047 PLPP3O14495 311 aa12.51□□□□□ -0.41
VAMP4-203ENST00000474047 LYPD3O95274 346 aa12.51□□□□□ -0.41
VAMP4-203ENST00000474047 THRBP10828 461 aa12.51□□□□□ -0.41
VAMP4-203ENST00000474047 TCN1P20061 433 aaPredicted RBP12.51□□□□□ -0.41
VAMP4-203ENST00000474047 RBM34P42696 430 aaKnown RBP12.51□□□□□ -0.41
VAMP4-203ENST00000474047 YAP1P46937 504 aaKnown RBP12.51□□□□□ -0.41
VAMP4-203ENST00000474047 FOXG1P55316 489 aaPredicted RBP12.51□□□□□ -0.41
VAMP4-203ENST00000474047 GABRA6Q16445 453 aa12.51□□□□□ -0.41
VAMP4-203ENST00000474047 ACKR1Q16570 336 aa12.51□□□□□ -0.41
VAMP4-203ENST00000474047 ZNF74Q16587 644 aa12.51□□□□□ -0.41
VAMP4-203ENST00000474047 CARD17Q5XLA6 110 aa12.51□□□□□ -0.41
VAMP4-203ENST00000474047 GLYATQ6IB77 296 aa12.51□□□□□ -0.41
VAMP4-203ENST00000474047 C16orf89Q6UX73 402 aa12.51□□□□□ -0.41
VAMP4-203ENST00000474047 CBLL1Q75N03 491 aa12.51□□□□□ -0.41
VAMP4-203ENST00000474047 VTCN1Q7Z7D3 282 aa12.51□□□□□ -0.41
VAMP4-203ENST00000474047 TSPYL5Q86VY4 417 aaPredicted RBP12.51□□□□□ -0.41
VAMP4-203ENST00000474047 PIK3C3Q8NEB9 887 aa12.51□□□□□ -0.41
VAMP4-203ENST00000474047 C1orf162Q8NEQ5 155 aaPredicted RBP12.51□□□□□ -0.41
VAMP4-203ENST00000474047 MUS81Q96NY9 551 aa12.51□□□□□ -0.41
VAMP4-203ENST00000474047 ALKBH3Q96Q83 286 aaPredicted RBP12.51□□□□□ -0.41
VAMP4-203ENST00000474047 FKRPQ9H9S5 495 aa12.51□□□□□ -0.41
VAMP4-203ENST00000474047 B3GAT1Q9P2W7 334 aa12.51□□□□□ -0.41
VAMP4-203ENST00000474047 MED31Q9Y3C7 131 aa12.51□□□□□ -0.41
VAMP4-203ENST00000474047 RNF115Q9Y4L5 304 aa12.51□□□□□ -0.41
VAMP4-203ENST00000474047 TEP1Q99973 2627 aaKnown RBP12.5□□□□□ -0.41
VAMP4-203ENST00000474047 RNF13O43567 381 aa12.5□□□□□ -0.41
VAMP4-203ENST00000474047 FZD7O75084 574 aa12.5□□□□□ -0.41
VAMP4-203ENST00000474047 UPK3AO75631 287 aa12.5□□□□□ -0.41
VAMP4-203ENST00000474047 ATE1O95260 518 aa12.5□□□□□ -0.41
VAMP4-203ENST00000474047 HPRP00739 348 aa12.5□□□□□ -0.41
VAMP4-203ENST00000474047 ZNF83P51522 516 aa12.5□□□□□ -0.41
VAMP4-203ENST00000474047 PRPS1P60891 318 aa12.5□□□□□ -0.41
VAMP4-203ENST00000474047 LGALS3BPQ08380 585 aa12.5□□□□□ -0.41
VAMP4-203ENST00000474047 NCMAPQ5T1S8 102 aa12.5□□□□□ -0.41
VAMP4-203ENST00000474047 PXKQ7Z7A4 578 aa12.5□□□□□ -0.41
VAMP4-203ENST00000474047 CYP4Z1Q86W10 505 aa12.5□□□□□ -0.41
VAMP4-203ENST00000474047 NKAIN4Q8IVV8 208 aa12.5□□□□□ -0.41
VAMP4-203ENST00000474047 PGAM4Q8N0Y7 254 aa12.5□□□□□ -0.41
VAMP4-203ENST00000474047 C17orf78Q8N4C9 275 aa12.5□□□□□ -0.41
VAMP4-203ENST00000474047 TMEM255BQ8WV15 326 aa12.5□□□□□ -0.41
VAMP4-203ENST00000474047 TMEM239Q8WW34 195 aa12.5□□□□□ -0.41
VAMP4-203ENST00000474047 HSH2DQ96JZ2 352 aa12.5□□□□□ -0.41
VAMP4-203ENST00000474047 PRRC1Q96M27 445 aa12.5□□□□□ -0.41
VAMP4-203ENST00000474047 CDRT15Q96T59 188 aa12.5□□□□□ -0.41
VAMP4-203ENST00000474047 PRSS27Q9BQR3 290 aa12.5□□□□□ -0.41
VAMP4-203ENST00000474047 C1QTNF6Q9BXI9 259 aa12.5□□□□□ -0.41
VAMP4-203ENST00000474047 LINC00470Q9BZP3 86 aa12.5□□□□□ -0.41
VAMP4-203ENST00000474047 B3GAT2Q9NPZ5 323 aa12.5□□□□□ -0.41
VAMP4-203ENST00000474047 ZNF229Q9UJW7 825 aa12.5□□□□□ -0.41
VAMP4-203ENST00000474047 AMDHD2Q9Y303 409 aa12.5□□□□□ -0.41
VAMP4-203ENST00000474047 CCDC168Q8NDH2 2452 aa12.5□□□□□ -0.41
VAMP4-203ENST00000474047 MYO9AB2RTY4 2548 aa12.5□□□□□ -0.41
VAMP4-203ENST00000474047 BLOC1S5-TXNDC5H3BN57 136 aa12.49□□□□□ -0.41
VAMP4-203ENST00000474047 M0R1B8 84 aa12.49□□□□□ -0.41
VAMP4-203ENST00000474047 PDLIM1O00151 329 aa12.49□□□□□ -0.41
VAMP4-203ENST00000474047 WNT11O96014 354 aa12.49□□□□□ -0.41
VAMP4-203ENST00000474047 PLAUP00749 431 aa12.49□□□□□ -0.41
VAMP4-203ENST00000474047 MT-ND1P03886 318 aa12.49□□□□□ -0.41
VAMP4-203ENST00000474047 HLA-DOBP13765 273 aa12.49□□□□□ -0.41
VAMP4-203ENST00000474047 LOXP28300 417 aaPredicted RBP12.49□□□□□ -0.41
VAMP4-203ENST00000474047 SLC25A3Q00325 362 aa12.49□□□□□ -0.41
VAMP4-203ENST00000474047 ROR2Q01974 943 aaKnown RBP12.49□□□□□ -0.41
VAMP4-203ENST00000474047 BSPH1Q075Z2 132 aa12.49□□□□□ -0.41
VAMP4-203ENST00000474047 SAMD4BQ5PRF9 694 aaKnown RBP12.49□□□□□ -0.41
VAMP4-203ENST00000474047 C20orf204Q6ZNR8 217 aa12.49□□□□□ -0.41
VAMP4-203ENST00000474047 NANOGNBQ7Z5D8 188 aa12.49□□□□□ -0.41
VAMP4-203ENST00000474047 LRRC17Q8N6Y2 441 aa12.49□□□□□ -0.41
VAMP4-203ENST00000474047 PIGTQ969N2 578 aa12.49□□□□□ -0.41
VAMP4-203ENST00000474047 SGTBQ96EQ0 304 aa12.49□□□□□ -0.41
VAMP4-203ENST00000474047 CCL19Q99731 98 aa12.49□□□□□ -0.41
VAMP4-203ENST00000474047 FOXC2Q99958 501 aa12.49□□□□□ -0.41
VAMP4-203ENST00000474047 EMC6Q9BV81 110 aa12.49□□□□□ -0.41
VAMP4-203ENST00000474047 AMBRA1Q9C0C7 1298 aa12.49□□□□□ -0.41
VAMP4-203ENST00000474047 SLC17A5Q9NRA2 495 aa12.49□□□□□ -0.41
VAMP4-203ENST00000474047 MED29Q9NX70 200 aa12.49□□□□□ -0.41
VAMP4-203ENST00000474047 ADAM21Q9UKJ8 722 aa12.49□□□□□ -0.41
VAMP4-203ENST00000474047 FAM32AQ9Y421 112 aaKnown RBP12.49□□□□□ -0.41
VAMP4-203ENST00000474047 PRR14LQ5THK1 2151 aa12.49□□□□□ -0.41
VAMP4-203ENST00000474047 M0R3G1 203 aa12.48□□□□□ -0.41
VAMP4-203ENST00000474047 TRAF3IP2O43734 574 aaPredicted RBP12.48□□□□□ -0.41
VAMP4-203ENST00000474047 FUT1P19526 365 aa12.48□□□□□ -0.41
VAMP4-203ENST00000474047 UBE2NP61088 152 aaKnown RBP12.48□□□□□ -0.41
VAMP4-203ENST00000474047 KRT72Q14CN4 511 aa12.48□□□□□ -0.41
VAMP4-203ENST00000474047 DEFB113Q30KQ7 82 aa12.48□□□□□ -0.41
VAMP4-203ENST00000474047 TMEM108Q6UXF1 575 aa12.48□□□□□ -0.41
VAMP4-203ENST00000474047 RRM2BQ7LG56 351 aa12.48□□□□□ -0.41
VAMP4-203ENST00000474047 DEFB107AQ8IZN7 70 aa12.48□□□□□ -0.41
VAMP4-203ENST00000474047 DEPDC4Q8N2C3 294 aa12.48□□□□□ -0.41
VAMP4-203ENST00000474047 ANKK1Q8NFD2 765 aa12.48□□□□□ -0.41
VAMP4-203ENST00000474047 OR6N1Q8NGY5 312 aa12.48□□□□□ -0.41
VAMP4-203ENST00000474047 PFN4Q8NHR9 129 aa12.48□□□□□ -0.41
VAMP4-203ENST00000474047 AKAP1Q92667 903 aaKnown RBP eCLIP12.48□□□□□ -0.41
VAMP4-203ENST00000474047 NSL1Q96IY1 281 aa12.48□□□□□ -0.41
VAMP4-203ENST00000474047 TXNDC15Q96J42 360 aa12.48□□□□□ -0.41
VAMP4-203ENST00000474047 OR2M2Q96R28 347 aa12.48□□□□□ -0.41
VAMP4-203ENST00000474047 ZNF426Q9BUY5 554 aa12.48□□□□□ -0.41
VAMP4-203ENST00000474047 MEPEQ9NQ76 525 aaPredicted RBP12.48□□□□□ -0.41
VAMP4-203ENST00000474047 RHCGQ9UBD6 479 aa12.48□□□□□ -0.41
VAMP4-203ENST00000474047 SAMD4AQ9UPU9 718 aaKnown RBP12.48□□□□□ -0.41
VAMP4-203ENST00000474047 MAGED1Q9Y5V3 778 aaPredicted RBP12.48□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms