RNA–Protein interactions for RNA: ENST00000473376.1

CHD3-209, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 562 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-209ENST00000473376 SRD5A1P18405 259 aa11.75□□□□□ -0.53
CHD3-209ENST00000473376 NPR2P20594 1047 aa11.75□□□□□ -0.53
CHD3-209ENST00000473376 CLDN17P56750 224 aa11.75□□□□□ -0.53
CHD3-209ENST00000473376 SQLEQ14534 574 aa11.75□□□□□ -0.53
CHD3-209ENST00000473376 SLC9B1Q4ZJI4 515 aa11.75□□□□□ -0.53
CHD3-209ENST00000473376 REEP3Q6NUK4 255 aa11.75□□□□□ -0.53
CHD3-209ENST00000473376 EPGNQ6UW88 154 aa11.75□□□□□ -0.53
CHD3-209ENST00000473376 GPR137CQ8N3F9 429 aa11.75□□□□□ -0.53
CHD3-209ENST00000473376 ANKRD42Q8N9B4 389 aa11.75□□□□□ -0.53
CHD3-209ENST00000473376 HTRA1Q92743 480 aa11.75□□□□□ -0.53
CHD3-209ENST00000473376 VPS33AQ96AX1 596 aa11.75□□□□□ -0.53
CHD3-209ENST00000473376 KTI12Q96EK9 354 aaPredicted RBP11.75□□□□□ -0.53
CHD3-209ENST00000473376 FOXN4Q96NZ1 517 aa11.75□□□□□ -0.53
CHD3-209ENST00000473376 DOK1Q99704 481 aa11.75□□□□□ -0.53
CHD3-209ENST00000473376 PRR14Q9BWN1 585 aa11.75□□□□□ -0.53
CHD3-209ENST00000473376 TMEM38AQ9H6F2 299 aa11.75□□□□□ -0.53
CHD3-209ENST00000473376 GPR35Q9HC97 309 aa11.75□□□□□ -0.53
CHD3-209ENST00000473376 TESQ9UGI8 421 aaKnown RBP11.75□□□□□ -0.53
CHD3-209ENST00000473376 FBXL3Q9UKT7 428 aa11.75□□□□□ -0.53
CHD3-209ENST00000473376 USP22Q9UPT9 525 aa11.75□□□□□ -0.53
CHD3-209ENST00000473376 ANK3Q12955 4377 aaKnown RBP11.75□□□□□ -0.53
CHD3-209ENST00000473376 LOC100289279A0A1B0GTE1 492 aa11.74□□□□□ -0.53
CHD3-209ENST00000473376 C5orf58C9J3I9 102 aa11.74□□□□□ -0.53
CHD3-209ENST00000473376 ENTPD5O75356 428 aa11.74□□□□□ -0.53
CHD3-209ENST00000473376 ARAFP10398 606 aa11.74□□□□□ -0.53
CHD3-209ENST00000473376 APEHP13798 732 aaKnown RBP11.74□□□□□ -0.53
CHD3-209ENST00000473376 GPX2P18283 190 aa11.74□□□□□ -0.53
CHD3-209ENST00000473376 RPS5P46782 204 aaKnown RBP11.74□□□□□ -0.53
CHD3-209ENST00000473376 STX1BP61266 288 aa11.74□□□□□ -0.53
CHD3-209ENST00000473376 ARF1P84077 181 aaKnown RBP11.74□□□□□ -0.53
CHD3-209ENST00000473376 HGFACQ04756 655 aa11.74□□□□□ -0.53
CHD3-209ENST00000473376 C1DQ13901 141 aaKnown RBP11.74□□□□□ -0.53
CHD3-209ENST00000473376 MAVSQ7Z434 540 aa11.74□□□□□ -0.53
CHD3-209ENST00000473376 TMEM123Q8N131 208 aa11.74□□□□□ -0.53
CHD3-209ENST00000473376 ZNF786Q8N393 782 aa11.74□□□□□ -0.53
CHD3-209ENST00000473376 STON2Q8WXE9 905 aa11.74□□□□□ -0.53
CHD3-209ENST00000473376 TLCD1Q96CP7 247 aa11.74□□□□□ -0.53
CHD3-209ENST00000473376 SLC25A36Q96CQ1 311 aa11.74□□□□□ -0.53
CHD3-209ENST00000473376 MSI2Q96DH6 328 aaKnown RBP11.74□□□□□ -0.53
CHD3-209ENST00000473376 SLC47A1Q96FL8 570 aa11.74□□□□□ -0.53
CHD3-209ENST00000473376 C1orf159Q96HA4 380 aa11.74□□□□□ -0.53
CHD3-209ENST00000473376 C7orf26Q96N11 449 aa11.74□□□□□ -0.53
CHD3-209ENST00000473376 OR2M2Q96R28 347 aa11.74□□□□□ -0.53
CHD3-209ENST00000473376 VRK1Q99986 396 aaPredicted RBP11.74□□□□□ -0.53
CHD3-209ENST00000473376 CRLF2Q9HC73 371 aa11.74□□□□□ -0.53
CHD3-209ENST00000473376 NOX1Q9Y5S8 564 aa11.74□□□□□ -0.53
CHD3-209ENST00000473376 A0A087WUJ7 227 aa11.73□□□□□ -0.53
CHD3-209ENST00000473376 A0A1B0GWA3 101 aa11.73□□□□□ -0.53
CHD3-209ENST00000473376 TRAF3IP2O43734 574 aaPredicted RBP11.73□□□□□ -0.53
CHD3-209ENST00000473376 FMO6PO60774 539 aa11.73□□□□□ -0.53
CHD3-209ENST00000473376 SERPINB7O75635 380 aa11.73□□□□□ -0.53
CHD3-209ENST00000473376 STAMBPO95630 424 aa11.73□□□□□ -0.53
CHD3-209ENST00000473376 MT-ATP6P00846 226 aa11.73□□□□□ -0.53
CHD3-209ENST00000473376 C8BP07358 591 aa11.73□□□□□ -0.53
CHD3-209ENST00000473376 ZNF16P17020 682 aaPredicted RBP11.73□□□□□ -0.53
CHD3-209ENST00000473376 PCMT1P22061 227 aa11.73□□□□□ -0.53
CHD3-209ENST00000473376 IGFBP5P24593 272 aa11.73□□□□□ -0.53
CHD3-209ENST00000473376 CALCRP30988 508 aa11.73□□□□□ -0.53
CHD3-209ENST00000473376 CHN2P52757 468 aa11.73□□□□□ -0.53
CHD3-209ENST00000473376 GGTLC2Q14390 218 aa11.73□□□□□ -0.53
CHD3-209ENST00000473376 CEACAM16Q2WEN9 425 aa11.73□□□□□ -0.53
CHD3-209ENST00000473376 GTDC1Q4AE62 458 aa11.73□□□□□ -0.53
CHD3-209ENST00000473376 ALG10BQ5I7T1 473 aa11.73□□□□□ -0.53
CHD3-209ENST00000473376 RPS26P11Q5JNZ5 115 aaPredicted RBP11.73□□□□□ -0.53
CHD3-209ENST00000473376 FAM120AOSQ5T036 256 aa11.73□□□□□ -0.53
CHD3-209ENST00000473376 BLOC1S3Q6QNY0 202 aa11.73□□□□□ -0.53
CHD3-209ENST00000473376 NHLRC1Q6VVB1 395 aa11.73□□□□□ -0.53
CHD3-209ENST00000473376 PXKQ7Z7A4 578 aa11.73□□□□□ -0.53
CHD3-209ENST00000473376 C20orf196Q8IYI0 205 aa11.73□□□□□ -0.53
CHD3-209ENST00000473376 OR9I1Q8NGQ6 314 aa11.73□□□□□ -0.53
CHD3-209ENST00000473376 TAAR8Q969N4 342 aa11.73□□□□□ -0.53
CHD3-209ENST00000473376 OR52B2Q96RD2 323 aa11.73□□□□□ -0.53
CHD3-209ENST00000473376 ZNF607Q96SK3 696 aa11.73□□□□□ -0.53
CHD3-209ENST00000473376 TMEM43Q9BTV4 400 aa11.73□□□□□ -0.53
CHD3-209ENST00000473376 CCDC28BQ9BUN5 200 aa11.73□□□□□ -0.53
CHD3-209ENST00000473376 B3GAT2Q9NPZ5 323 aa11.73□□□□□ -0.53
CHD3-209ENST00000473376 B3GNT2Q9NY97 397 aa11.73□□□□□ -0.53
CHD3-209ENST00000473376 MRPL39Q9NYK5 338 aaKnown RBP11.73□□□□□ -0.53
CHD3-209ENST00000473376 SELENONQ9NZV5 590 aa11.73□□□□□ -0.53
CHD3-209ENST00000473376 KLHL14Q9P2G3 628 aa11.73□□□□□ -0.53
CHD3-209ENST00000473376 NOL12Q9UGY1 213 aaKnown RBP eCLIP11.73□□□□□ -0.53
CHD3-209ENST00000473376 SPEF1Q9Y4P9 236 aa11.73□□□□□ -0.53
CHD3-209ENST00000473376 USH1CQ9Y6N9 552 aa11.73□□□□□ -0.53
CHD3-209ENST00000473376 V9GYY5 206 aaPredicted RBP11.73□□□□□ -0.53
CHD3-209ENST00000473376 IGKV1D-42A0A075B6H8 117 aa11.72□□□□□ -0.53
CHD3-209ENST00000473376 A0A096LPE4 126 aa11.72□□□□□ -0.53
CHD3-209ENST00000473376 IGHV2OR16-5A0A0B4J2B6 119 aa11.72□□□□□ -0.53
CHD3-209ENST00000473376 IGHV4-61A0A0C4DH41 118 aa11.72□□□□□ -0.53
CHD3-209ENST00000473376 A0A1W2PPZ6 126 aa11.72□□□□□ -0.53
CHD3-209ENST00000473376 TMEM129A0AVI4 362 aa11.72□□□□□ -0.53
CHD3-209ENST00000473376 hCG_2039718K7EN88 272 aa11.72□□□□□ -0.53
CHD3-209ENST00000473376 M0R082 166 aa11.72□□□□□ -0.53
CHD3-209ENST00000473376 NR5A2O00482 541 aa11.72□□□□□ -0.53
CHD3-209ENST00000473376 MGRN1O60291 552 aa11.72□□□□□ -0.53
CHD3-209ENST00000473376 LY6HO94772 140 aa11.72□□□□□ -0.53
CHD3-209ENST00000473376 NUDT7P0C024 238 aa11.72□□□□□ -0.53
CHD3-209ENST00000473376 NR4A1P22736 598 aa11.72□□□□□ -0.53
CHD3-209ENST00000473376 GRPRP30550 384 aa11.72□□□□□ -0.53
CHD3-209ENST00000473376 MAGOHP61326 146 aaKnown RBP11.72□□□□□ -0.53
CHD3-209ENST00000473376 MRPS11P82912 194 aaKnown RBP11.72□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 50.6 ms