RNA–Protein interactions for RNA: ENST00000472524.1

CCDC88B-205, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 779 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-205ENST00000472524 NQO1P15559 274 aaKnown RBP13.72□□□□□ -0.21
CCDC88B-205ENST00000472524 NUDT6P53370 316 aa13.72□□□□□ -0.21
CCDC88B-205ENST00000472524 PCBP3P57721 371 aaKnown RBP13.72□□□□□ -0.21
CCDC88B-205ENST00000472524 RBBP4Q09028 425 aa13.72□□□□□ -0.21
CCDC88B-205ENST00000472524 NRF1Q16656 503 aa13.72□□□□□ -0.21
CCDC88B-205ENST00000472524 ZNF544Q6NX49 715 aa13.72□□□□□ -0.21
CCDC88B-205ENST00000472524 H1FNTQ75WM6 255 aaPredicted RBP13.72□□□□□ -0.21
CCDC88B-205ENST00000472524 LINC00470Q9BZP3 86 aa13.72□□□□□ -0.21
CCDC88B-205ENST00000472524 OBP2BQ9NPH6 170 aa13.72□□□□□ -0.21
CCDC88B-205ENST00000472524 RCE1Q9Y256 329 aa13.72□□□□□ -0.21
CCDC88B-205ENST00000472524 RTTNQ86VV8 2226 aa13.72□□□□□ -0.21
CCDC88B-205ENST00000472524 IGHV1-18A0A0C4DH31 117 aa13.71□□□□□ -0.21
CCDC88B-205ENST00000472524 M0QX08 132 aa13.71□□□□□ -0.21
CCDC88B-205ENST00000472524 AKAP8O43823 692 aaKnown RBP13.71□□□□□ -0.21
CCDC88B-205ENST00000472524 FZD7O75084 574 aa13.71□□□□□ -0.21
CCDC88B-205ENST00000472524 CDH12P55289 794 aa13.71□□□□□ -0.21
CCDC88B-205ENST00000472524 SF3A3Q12874 501 aaKnown RBP eCLIP13.71□□□□□ -0.21
CCDC88B-205ENST00000472524 C1QTNF12Q5T7M4 302 aa13.71□□□□□ -0.21
CCDC88B-205ENST00000472524 NET1Q7Z628 596 aaPredicted RBP13.71□□□□□ -0.21
CCDC88B-205ENST00000472524 UEVLDQ8IX04 471 aa13.71□□□□□ -0.21
CCDC88B-205ENST00000472524 GPR137CQ8N3F9 429 aa13.71□□□□□ -0.21
CCDC88B-205ENST00000472524 C10orf53Q8N6V4 93 aa13.71□□□□□ -0.21
CCDC88B-205ENST00000472524 BCL2L2Q92843 193 aaPredicted RBP13.71□□□□□ -0.21
CCDC88B-205ENST00000472524 SLC38A2Q96QD8 506 aa13.71□□□□□ -0.21
CCDC88B-205ENST00000472524 EPYCQ99645 322 aa13.71□□□□□ -0.21
CCDC88B-205ENST00000472524 MCHR1Q99705 422 aa13.71□□□□□ -0.21
CCDC88B-205ENST00000472524 KCNS3Q9BQ31 491 aa13.71□□□□□ -0.21
CCDC88B-205ENST00000472524 SIKE1Q9BRV8 207 aa13.71□□□□□ -0.21
CCDC88B-205ENST00000472524 TMEM120AQ9BXJ8 343 aa13.71□□□□□ -0.21
CCDC88B-205ENST00000472524 ASPNQ9BXN1 380 aa13.71□□□□□ -0.21
CCDC88B-205ENST00000472524 NELFAQ9H3P2 528 aa13.71□□□□□ -0.21
CCDC88B-205ENST00000472524 STAB1Q9NY15 2570 aa13.71□□□□□ -0.22
CCDC88B-205ENST00000472524 LRRN3E7EW58 273 aa13.7□□□□□ -0.22
CCDC88B-205ENST00000472524 TRAF3IP2O43734 574 aaPredicted RBP13.7□□□□□ -0.22
CCDC88B-205ENST00000472524 ZNF432O94892 652 aa13.7□□□□□ -0.22
CCDC88B-205ENST00000472524 HPRP00739 348 aa13.7□□□□□ -0.22
CCDC88B-205ENST00000472524 BGLAPP02818 100 aa13.7□□□□□ -0.22
CCDC88B-205ENST00000472524 APOBEC3AP31941 199 aaPredicted RBP13.7□□□□□ -0.22
CCDC88B-205ENST00000472524 SH3BGRP55822 239 aaPredicted RBP13.7□□□□□ -0.22
CCDC88B-205ENST00000472524 ARF1P84077 181 aaKnown RBP13.7□□□□□ -0.22
CCDC88B-205ENST00000472524 MFSD13AQ14CX5 517 aa13.7□□□□□ -0.22
CCDC88B-205ENST00000472524 RAB35Q15286 201 aa13.7□□□□□ -0.22
CCDC88B-205ENST00000472524 DUSP7Q16829 419 aa13.7□□□□□ -0.22
CCDC88B-205ENST00000472524 CARD17Q5XLA6 110 aa13.7□□□□□ -0.22
CCDC88B-205ENST00000472524 ANKRD16Q6P6B7 361 aa13.7□□□□□ -0.22
CCDC88B-205ENST00000472524 DNM1P46Q6ZS02 220 aa13.7□□□□□ -0.22
CCDC88B-205ENST00000472524 ADPRHL1Q8NDY3 354 aa13.7□□□□□ -0.22
CCDC88B-205ENST00000472524 GPR32P1Q8NGA4 272 aa13.7□□□□□ -0.22
CCDC88B-205ENST00000472524 OR10A6Q8NH74 314 aa13.7□□□□□ -0.22
CCDC88B-205ENST00000472524 VANGL1Q8TAA9 524 aaPredicted RBP13.7□□□□□ -0.22
CCDC88B-205ENST00000472524 TSPEARQ8WU66 669 aa13.7□□□□□ -0.22
CCDC88B-205ENST00000472524 BOD1Q96IK1 185 aa13.7□□□□□ -0.22
CCDC88B-205ENST00000472524 MOGAT1Q96PD6 335 aa13.7□□□□□ -0.22
CCDC88B-205ENST00000472524 OR2M2Q96R28 347 aa13.7□□□□□ -0.22
CCDC88B-205ENST00000472524 ARHGDIGQ99819 225 aa13.7□□□□□ -0.22
CCDC88B-205ENST00000472524 KAT8Q9H7Z6 458 aaKnown RBP13.7□□□□□ -0.22
CCDC88B-205ENST00000472524 EVA1AQ9H8M9 152 aa13.7□□□□□ -0.22
CCDC88B-205ENST00000472524 GPR35Q9HC97 309 aa13.7□□□□□ -0.22
CCDC88B-205ENST00000472524 IGHV4-30-2A0A087WSY4 118 aa13.69□□□□□ -0.22
CCDC88B-205ENST00000472524 ARPC4-TTLL3A0A0A6YYG9 625 aa13.69□□□□□ -0.22
CCDC88B-205ENST00000472524 CPSF4LA6NMK7 179 aaKnown RBP13.69□□□□□ -0.22
CCDC88B-205ENST00000472524 MS4A18H0YCH9 400 aa13.69□□□□□ -0.22
CCDC88B-205ENST00000472524 SERPINI2O75830 405 aa13.69□□□□□ -0.22
CCDC88B-205ENST00000472524 SEC14L2O76054 403 aa13.69□□□□□ -0.22
CCDC88B-205ENST00000472524 TP53P04637 393 aaPredicted RBP13.69□□□□□ -0.22
CCDC88B-205ENST00000472524 HLA-DOBP13765 273 aa13.69□□□□□ -0.22
CCDC88B-205ENST00000472524 PCGF2P35227 344 aa13.69□□□□□ -0.22
CCDC88B-205ENST00000472524 POU3F1Q03052 451 aaPredicted RBP13.69□□□□□ -0.22
CCDC88B-205ENST00000472524 PMS2P3Q13401 168 aa13.69□□□□□ -0.22
CCDC88B-205ENST00000472524 NPTX1Q15818 432 aa13.69□□□□□ -0.22
CCDC88B-205ENST00000472524 CEACAM16Q2WEN9 425 aa13.69□□□□□ -0.22
CCDC88B-205ENST00000472524 MS4A18Q3C1V0 323 aa13.69□□□□□ -0.22
CCDC88B-205ENST00000472524 CLEC2AQ6UVW9 174 aa13.69□□□□□ -0.22
CCDC88B-205ENST00000472524 PIK3C3Q8NEB9 887 aa13.69□□□□□ -0.22
CCDC88B-205ENST00000472524 OR6T1Q8NGN1 323 aa13.69□□□□□ -0.22
CCDC88B-205ENST00000472524 OR6S1Q8NH40 331 aa13.69□□□□□ -0.22
CCDC88B-205ENST00000472524 MAGEE2Q8TD90 523 aaPredicted RBP13.69□□□□□ -0.22
CCDC88B-205ENST00000472524 SLC26A7Q8TE54 656 aa13.69□□□□□ -0.22
CCDC88B-205ENST00000472524 FBXO17Q96EF6 278 aa13.69□□□□□ -0.22
CCDC88B-205ENST00000472524 ZNF837Q96EG3 531 aaPredicted RBP13.69□□□□□ -0.22
CCDC88B-205ENST00000472524 RHNO1Q9BSD3 238 aa13.69□□□□□ -0.22
CCDC88B-205ENST00000472524 TMEM43Q9BTV4 400 aa13.69□□□□□ -0.22
CCDC88B-205ENST00000472524 EMC6Q9BV81 110 aa13.69□□□□□ -0.22
CCDC88B-205ENST00000472524 SEC61A2Q9H9S3 476 aa13.69□□□□□ -0.22
CCDC88B-205ENST00000472524 CRLF2Q9HC73 371 aa13.69□□□□□ -0.22
CCDC88B-205ENST00000472524 YAE1D1Q9NRH1 226 aa13.69□□□□□ -0.22
CCDC88B-205ENST00000472524 CORINQ9Y5Q5 1042 aa13.69□□□□□ -0.22
CCDC88B-205ENST00000472524 RPL36A-HNRNPH2H7BZ11 118 aa13.68□□□□□ -0.22
CCDC88B-205ENST00000472524 M0R3G1 203 aa13.68□□□□□ -0.22
CCDC88B-205ENST00000472524 FBP2O00757 339 aa13.68□□□□□ -0.22
CCDC88B-205ENST00000472524 CD5LO43866 347 aa13.68□□□□□ -0.22
CCDC88B-205ENST00000472524 CECR9P0C854 216 aa13.68□□□□□ -0.22
CCDC88B-205ENST00000472524 TROVE2P10155 538 aaKnown RBP eCLIP13.68□□□□□ -0.22
CCDC88B-205ENST00000472524 CAPZA2P47755 286 aa13.68□□□□□ -0.22
CCDC88B-205ENST00000472524 CHRNB3Q05901 458 aa13.68□□□□□ -0.22
CCDC88B-205ENST00000472524 TRMT5Q32P41 509 aaKnown RBP13.68□□□□□ -0.22
CCDC88B-205ENST00000472524 ENTPD8Q5MY95 495 aa13.68□□□□□ -0.22
CCDC88B-205ENST00000472524 PHYHD1Q5SRE7 291 aa13.68□□□□□ -0.22
CCDC88B-205ENST00000472524 SWT1Q5T5J6 900 aaKnown RBP13.68□□□□□ -0.22
CCDC88B-205ENST00000472524 METTL21CQ5VZV1 264 aa13.68□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms