RNA–Protein interactions for RNA: ENST00000472056.5

COL6A3-209, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 8,628 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-209ENST00000472056 ZNF28P17035 718 aa12.41□□□□□ -0.42
COL6A3-209ENST00000472056 GALP22466 123 aa12.41□□□□□ -0.42
COL6A3-209ENST00000472056 CSNK1A1P48729 337 aa12.41□□□□□ -0.42
COL6A3-209ENST00000472056 SUB1P53999 127 aaKnown RBP eCLIP12.41□□□□□ -0.42
COL6A3-209ENST00000472056 UBXN2BQ14CS0 331 aa12.41□□□□□ -0.42
COL6A3-209ENST00000472056 ACOT6Q3I5F7 207 aaPredicted RBP12.41□□□□□ -0.42
COL6A3-209ENST00000472056 SDSLQ96GA7 329 aa12.41□□□□□ -0.42
COL6A3-209ENST00000472056 SCLYQ96I15 445 aa12.41□□□□□ -0.42
COL6A3-209ENST00000472056 HINT2Q9BX68 163 aa12.41□□□□□ -0.42
COL6A3-209ENST00000472056 ATP13A2Q9NQ11 1180 aa12.41□□□□□ -0.42
COL6A3-209ENST00000472056 PCDHGA6Q9Y5G7 932 aa12.41□□□□□ -0.42
COL6A3-209ENST00000472056 RAG2P55895 527 aa12.4□□□□□ -0.42
COL6A3-209ENST00000472056 PIN1Q13526 163 aaPredicted RBP12.4□□□□□ -0.42
COL6A3-209ENST00000472056 RNLSQ5VYX0 342 aa12.4□□□□□ -0.42
COL6A3-209ENST00000472056 OR4N2Q8NGD1 307 aa12.4□□□□□ -0.42
COL6A3-209ENST00000472056 NEURL3Q96EH8 262 aa12.4□□□□□ -0.42
COL6A3-209ENST00000472056 ACPTQ9BZG2 426 aa12.4□□□□□ -0.42
COL6A3-209ENST00000472056 TMX2-CTNND1H3BSU7 103 aa12.4□□□□□ -0.42
COL6A3-209ENST00000472056 DGKEP52429 567 aa12.4□□□□□ -0.42
COL6A3-209ENST00000472056 GP2P55259 537 aaKnown RBP12.4□□□□□ -0.42
COL6A3-209ENST00000472056 DPY19L2P2Q6ZN68 376 aa12.4□□□□□ -0.42
COL6A3-209ENST00000472056 A4GALTQ9NPC4 353 aa12.4□□□□□ -0.42
COL6A3-209ENST00000472056 CNIH4Q9P003 139 aa12.4□□□□□ -0.42
COL6A3-209ENST00000472056 CSNK1G3Q9Y6M4 447 aa12.4□□□□□ -0.42
COL6A3-209ENST00000472056 PLSCR5A0PG75 271 aa12.4□□□□□ -0.42
COL6A3-209ENST00000472056 OR2A25A4D2G3 310 aa12.4□□□□□ -0.42
COL6A3-209ENST00000472056 ANTXRLA6NF34 631 aa12.4□□□□□ -0.42
COL6A3-209ENST00000472056 A8MUA0 341 aa12.4□□□□□ -0.42
COL6A3-209ENST00000472056 MTX2O75431 263 aa12.4□□□□□ -0.42
COL6A3-209ENST00000472056 TBX18O95935 607 aa12.4□□□□□ -0.42
COL6A3-209ENST00000472056 CHRNEQ04844 493 aa12.4□□□□□ -0.42
COL6A3-209ENST00000472056 DGKZQ13574 1117 aa12.4□□□□□ -0.42
COL6A3-209ENST00000472056 EBPQ15125 230 aaKnown RBP12.4□□□□□ -0.42
COL6A3-209ENST00000472056 ZNF684Q5T5D7 378 aa12.4□□□□□ -0.42
COL6A3-209ENST00000472056 GRINAQ7Z429 371 aa12.4□□□□□ -0.42
COL6A3-209ENST00000472056 FAM185AQ8N0U4 392 aa12.4□□□□□ -0.42
COL6A3-209ENST00000472056 ISL2Q96A47 359 aa12.4□□□□□ -0.42
COL6A3-209ENST00000472056 IKZF4Q9H2S9 585 aa12.4□□□□□ -0.42
COL6A3-209ENST00000472056 TREX1Q9NSU2 369 aa12.4□□□□□ -0.42
COL6A3-209ENST00000472056 NDUFB11Q9NX14 153 aa12.4□□□□□ -0.42
COL6A3-209ENST00000472056 YARS2Q9Y2Z4 477 aaKnown RBP12.4□□□□□ -0.42
COL6A3-209ENST00000472056 ZCWPW2A0A1B0GU75 182 aa12.4□□□□□ -0.42
COL6A3-209ENST00000472056 UMAD1C9J7I0 102 aa12.4□□□□□ -0.42
COL6A3-209ENST00000472056 LGALS8O00214 317 aa12.4□□□□□ -0.42
COL6A3-209ENST00000472056 ZNF207O43670 478 aaKnown RBP12.4□□□□□ -0.42
COL6A3-209ENST00000472056 ZNF239Q16600 458 aaKnown RBP12.4□□□□□ -0.42
COL6A3-209ENST00000472056 LRRC73Q5JTD7 316 aa12.4□□□□□ -0.42
COL6A3-209ENST00000472056 ANKRD16Q6P6B7 361 aa12.4□□□□□ -0.42
COL6A3-209ENST00000472056 CPNE4Q96A23 557 aaPredicted RBP12.4□□□□□ -0.42
COL6A3-209ENST00000472056 ZMYND19Q96E35 227 aaPredicted RBP12.4□□□□□ -0.42
COL6A3-209ENST00000472056 KCNK12Q9HB15 430 aa12.4□□□□□ -0.42
COL6A3-209ENST00000472056 PLEK2Q9NYT0 353 aa12.4□□□□□ -0.42
COL6A3-209ENST00000472056 H0YIV9 168 aa12.4□□□□□ -0.42
COL6A3-209ENST00000472056 ARAFP10398 606 aa12.4□□□□□ -0.42
COL6A3-209ENST00000472056 CBLP22681 906 aa12.4□□□□□ -0.42
COL6A3-209ENST00000472056 RPS26P62854 115 aaKnown RBP12.4□□□□□ -0.42
COL6A3-209ENST00000472056 GRB2P62993 217 aaKnown RBP12.4□□□□□ -0.42
COL6A3-209ENST00000472056 LCN10Q6JVE6 187 aa12.4□□□□□ -0.42
COL6A3-209ENST00000472056 ADIPOR2Q86V24 386 aa12.4□□□□□ -0.42
COL6A3-209ENST00000472056 LGI3Q8N145 548 aa12.4□□□□□ -0.42
COL6A3-209ENST00000472056 USB1Q9BQ65 265 aaKnown RBP12.4□□□□□ -0.42
COL6A3-209ENST00000472056 ABHD6Q9BV23 337 aa12.4□□□□□ -0.42
COL6A3-209ENST00000472056 TRBV23OR9-2A0A075B6M9 112 aa12.4□□□□□ -0.42
COL6A3-209ENST00000472056 H3BSH0 61 aa12.4□□□□□ -0.42
COL6A3-209ENST00000472056 SDC1P18827 310 aa12.4□□□□□ -0.42
COL6A3-209ENST00000472056 GABRA2P47869 451 aa12.4□□□□□ -0.42
COL6A3-209ENST00000472056 RPS18P62269 152 aaKnown RBP12.4□□□□□ -0.42
COL6A3-209ENST00000472056 RUNX2Q13950 521 aa12.4□□□□□ -0.42
COL6A3-209ENST00000472056 PCED1AQ9H1Q7 454 aa12.4□□□□□ -0.42
COL6A3-209ENST00000472056 ST8SIA4Q92187 359 aa12.4□□□□□ -0.43
COL6A3-209ENST00000472056 IER3IP1Q9Y5U9 82 aa12.4□□□□□ -0.43
COL6A3-209ENST00000472056 TRIM77I1YAP6 450 aa12.39□□□□□ -0.43
COL6A3-209ENST00000472056 ZNF44P15621 663 aa12.39□□□□□ -0.43
COL6A3-209ENST00000472056 FIBINQ8TAL6 211 aa12.39□□□□□ -0.43
COL6A3-209ENST00000472056 DDX31Q9H8H2 851 aaKnown RBP12.39□□□□□ -0.43
COL6A3-209ENST00000472056 ZNF629Q9UEG4 869 aaPredicted RBP12.39□□□□□ -0.43
COL6A3-209ENST00000472056 TRABD2BA6NFA1 517 aa12.39□□□□□ -0.43
COL6A3-209ENST00000472056 SYN1P17600 705 aa12.39□□□□□ -0.43
COL6A3-209ENST00000472056 EPHA1P21709 976 aa12.39□□□□□ -0.43
COL6A3-209ENST00000472056 GCH1P30793 250 aa12.39□□□□□ -0.43
COL6A3-209ENST00000472056 SEC13P55735 322 aa12.39□□□□□ -0.43
COL6A3-209ENST00000472056 CMTM8Q8IZV2 173 aa12.39□□□□□ -0.43
COL6A3-209ENST00000472056 CREB3L4Q8TEY5 395 aa12.39□□□□□ -0.43
COL6A3-209ENST00000472056 PHYHIPLQ96FC7 376 aa12.39□□□□□ -0.43
COL6A3-209ENST00000472056 ENKD1Q9H0I2 346 aa12.39□□□□□ -0.43
COL6A3-209ENST00000472056 CTU2Q2VPK5 515 aaKnown RBP12.39□□□□□ -0.43
COL6A3-209ENST00000472056 OR13C8Q8NGS7 320 aa12.39□□□□□ -0.43
COL6A3-209ENST00000472056 TAS2R45P59539 299 aa12.39□□□□□ -0.43
COL6A3-209ENST00000472056 UBE2MP61081 183 aaKnown RBP12.39□□□□□ -0.43
COL6A3-209ENST00000472056 OGFOD3Q6PK18 319 aa12.39□□□□□ -0.43
COL6A3-209ENST00000472056 LGALS14Q8TCE9 139 aa12.39□□□□□ -0.43
COL6A3-209ENST00000472056 CIB3Q96Q77 187 aaPredicted RBP12.39□□□□□ -0.43
COL6A3-209ENST00000472056 ERVMER34-1Q9H9K5 563 aa12.39□□□□□ -0.43
COL6A3-209ENST00000472056 LIN7CQ9NUP9 197 aaKnown RBP12.39□□□□□ -0.43
COL6A3-209ENST00000472056 POU2F3Q9UKI9 436 aa12.39□□□□□ -0.43
COL6A3-209ENST00000472056 NSG2Q9Y328 171 aa12.39□□□□□ -0.43
COL6A3-209ENST00000472056 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP12.39□□□□□ -0.43
COL6A3-209ENST00000472056 TMEM269A0A1B0GVZ9 245 aa12.39□□□□□ -0.43
COL6A3-209ENST00000472056 H7BYZ3 331 aa12.39□□□□□ -0.43
COL6A3-209ENST00000472056 GALR3O60755 368 aaPredicted RBP12.39□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms