RNA–Protein interactions for RNA: ENST00000469511.1

PTPN4-209, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 3

Gene PTPN4, Length 476 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-209ENST00000469511 CSNK2A1P68400 391 aaPredicted RBP4.47□□□□□ -1.69
PTPN4-209ENST00000469511 ARF1P84077 181 aaKnown RBP4.47□□□□□ -1.69
PTPN4-209ENST00000469511 TGFBR3Q03167 851 aa4.47□□□□□ -1.69
PTPN4-209ENST00000469511 PIN1Q13526 163 aaPredicted RBP4.47□□□□□ -1.69
PTPN4-209ENST00000469511 CBFBQ13951 182 aa4.47□□□□□ -1.69
PTPN4-209ENST00000469511 DAG1Q14118 895 aa4.47□□□□□ -1.69
PTPN4-209ENST00000469511 KIAA0040Q15053 153 aa4.47□□□□□ -1.69
PTPN4-209ENST00000469511 GPR68Q15743 365 aa4.47□□□□□ -1.69
PTPN4-209ENST00000469511 UAP1Q16222 522 aaPredicted RBP4.47□□□□□ -1.69
PTPN4-209ENST00000469511 VPS26BQ4G0F5 336 aa4.47□□□□□ -1.69
PTPN4-209ENST00000469511 SLC9B1Q4ZJI4 515 aa4.47□□□□□ -1.69
PTPN4-209ENST00000469511 SPIN4Q56A73 249 aa4.47□□□□□ -1.69
PTPN4-209ENST00000469511 PHYHD1Q5SRE7 291 aa4.47□□□□□ -1.69
PTPN4-209ENST00000469511 ZNF678Q5SXM1 525 aa4.47□□□□□ -1.69
PTPN4-209ENST00000469511 DCST2Q5T1A1 773 aa4.47□□□□□ -1.69
PTPN4-209ENST00000469511 KANK2Q63ZY3 851 aa4.47□□□□□ -1.69
PTPN4-209ENST00000469511 NOXRED1Q6NXP6 359 aa4.47□□□□□ -1.69
PTPN4-209ENST00000469511 METTL2BQ6P1Q9 378 aaKnown RBP4.47□□□□□ -1.69
PTPN4-209ENST00000469511 C16orf87Q6PH81 154 aa4.47□□□□□ -1.69
PTPN4-209ENST00000469511 KLHL24Q6TFL4 600 aa4.47□□□□□ -1.69
PTPN4-209ENST00000469511 GPRIN3Q6ZVF9 776 aa4.47□□□□□ -1.69
PTPN4-209ENST00000469511 AAED1Q7RTV5 226 aa4.47□□□□□ -1.69
PTPN4-209ENST00000469511 MDP1Q86V88 176 aa4.47□□□□□ -1.69
PTPN4-209ENST00000469511 CLEC4FQ8N1N0 589 aa4.47□□□□□ -1.69
PTPN4-209ENST00000469511 KDM8Q8N371 416 aa4.47□□□□□ -1.69
PTPN4-209ENST00000469511 NOA1Q8NC60 698 aaKnown RBP4.47□□□□□ -1.69
PTPN4-209ENST00000469511 OR9K2Q8NGE7 335 aa4.47□□□□□ -1.69
PTPN4-209ENST00000469511 OR5D16Q8NGK9 328 aa4.47□□□□□ -1.69
PTPN4-209ENST00000469511 PIGXQ8TBF5 258 aa4.47□□□□□ -1.69
PTPN4-209ENST00000469511 MS4A4EQ96PG1 132 aa4.47□□□□□ -1.69
PTPN4-209ENST00000469511 SDF2Q99470 211 aa4.47□□□□□ -1.69
PTPN4-209ENST00000469511 GATA5Q9BWX5 397 aaPredicted RBP4.47□□□□□ -1.69
PTPN4-209ENST00000469511 C1QTNF3Q9BXJ4 246 aa4.47□□□□□ -1.69
PTPN4-209ENST00000469511 CRLF2Q9HC73 371 aa4.47□□□□□ -1.69
PTPN4-209ENST00000469511 TMEM45AQ9NWC5 275 aa4.47□□□□□ -1.69
PTPN4-209ENST00000469511 CHRNA9Q9UGM1 479 aa4.47□□□□□ -1.69
PTPN4-209ENST00000469511 LEF1Q9UJU2 399 aaPredicted RBP4.47□□□□□ -1.69
PTPN4-209ENST00000469511 MKLN1Q9UL63 735 aa4.47□□□□□ -1.69
PTPN4-209ENST00000469511 SNX12Q9UMY4 172 aa4.47□□□□□ -1.69
PTPN4-209ENST00000469511 PPP2R2CQ9Y2T4 447 aa4.47□□□□□ -1.69
PTPN4-209ENST00000469511 JRKLQ9Y4A0 524 aa4.47□□□□□ -1.69
PTPN4-209ENST00000469511 WIPI2Q9Y4P8 454 aa4.47□□□□□ -1.69
PTPN4-209ENST00000469511 CCL27Q9Y4X3 112 aa4.47□□□□□ -1.69
PTPN4-209ENST00000469511 MMP24Q9Y5R2 645 aa4.47□□□□□ -1.69
PTPN4-209ENST00000469511 TENM2Q9NT68 2774 aa4.46□□□□□ -1.7
PTPN4-209ENST00000469511 DNAH3Q8TD57 4116 aa4.46□□□□□ -1.7
PTPN4-209ENST00000469511 H0YL77 283 aa4.46□□□□□ -1.7
PTPN4-209ENST00000469511 J3QLI3 93 aa4.46□□□□□ -1.7
PTPN4-209ENST00000469511 PIP5K1BO14986 540 aa4.46□□□□□ -1.7
PTPN4-209ENST00000469511 SMIM24O75264 130 aa4.46□□□□□ -1.7
PTPN4-209ENST00000469511 UGT2B17O75795 530 aa4.46□□□□□ -1.7
PTPN4-209ENST00000469511 CSTAP01040 98 aa4.46□□□□□ -1.7
PTPN4-209ENST00000469511 HLA-HP01893 362 aa4.46□□□□□ -1.7
PTPN4-209ENST00000469511 ERCC1P07992 297 aaPredicted RBP4.46□□□□□ -1.7
PTPN4-209ENST00000469511 RBP1P09455 135 aa4.46□□□□□ -1.7
PTPN4-209ENST00000469511 PATE4P0C8F1 98 aa4.46□□□□□ -1.7
PTPN4-209ENST00000469511 ZNF35P13682 527 aa4.46□□□□□ -1.7
PTPN4-209ENST00000469511 SELEP16581 610 aa4.46□□□□□ -1.7
PTPN4-209ENST00000469511 ATP6V1C1P21283 382 aa4.46□□□□□ -1.7
PTPN4-209ENST00000469511 LCN1P31025 176 aa4.46□□□□□ -1.7
PTPN4-209ENST00000469511 PGM1P36871 562 aa4.46□□□□□ -1.7
PTPN4-209ENST00000469511 MAGEA4P43358 317 aa4.46□□□□□ -1.7
PTPN4-209ENST00000469511 MTNR1BP49286 362 aa4.46□□□□□ -1.7
PTPN4-209ENST00000469511 UBE2NP61088 152 aaKnown RBP4.46□□□□□ -1.7
PTPN4-209ENST00000469511 ERVS71-1P61550 626 aa4.46□□□□□ -1.7
PTPN4-209ENST00000469511 CCL8P80075 99 aa4.46□□□□□ -1.7
PTPN4-209ENST00000469511 PIGFQ07326 219 aa4.46□□□□□ -1.7
PTPN4-209ENST00000469511 BNIP2Q12982 314 aa4.46□□□□□ -1.7
PTPN4-209ENST00000469511 CEACAM7Q14002 265 aa4.46□□□□□ -1.7
PTPN4-209ENST00000469511 RASA2Q15283 850 aa4.46□□□□□ -1.7
PTPN4-209ENST00000469511 FAM189A2Q15884 450 aa4.46□□□□□ -1.7
PTPN4-209ENST00000469511 TMEM255AQ5JRV8 349 aa4.46□□□□□ -1.7
PTPN4-209ENST00000469511 TEX35Q5T0J7 233 aa4.46□□□□□ -1.7
PTPN4-209ENST00000469511 OTUD3Q5T2D3 398 aaPredicted RBP4.46□□□□□ -1.7
PTPN4-209ENST00000469511 NIPAL3Q6P499 406 aa4.46□□□□□ -1.7
PTPN4-209ENST00000469511 KLC3Q6P597 504 aa4.46□□□□□ -1.7
PTPN4-209ENST00000469511 PGM2L1Q6PCE3 622 aa4.46□□□□□ -1.7
PTPN4-209ENST00000469511 PAQR6Q6TCH4 344 aa4.46□□□□□ -1.7
PTPN4-209ENST00000469511 RBMS3Q6XE24 437 aaKnown RBP4.46□□□□□ -1.7
PTPN4-209ENST00000469511 EPHX4Q8IUS5 362 aa4.46□□□□□ -1.7
PTPN4-209ENST00000469511 LYSMD2Q8IV50 215 aa4.46□□□□□ -1.7
PTPN4-209ENST00000469511 SYT14Q8NB59 555 aa4.46□□□□□ -1.7
PTPN4-209ENST00000469511 OR2T11Q8NH01 316 aa4.46□□□□□ -1.7
PTPN4-209ENST00000469511 FGFBP3Q8TAT2 258 aa4.46□□□□□ -1.7
PTPN4-209ENST00000469511 ST8SIA1Q92185 356 aa4.46□□□□□ -1.7
PTPN4-209ENST00000469511 RAB8BQ92930 207 aa4.46□□□□□ -1.7
PTPN4-209ENST00000469511 TMEM45BQ96B21 275 aa4.46□□□□□ -1.7
PTPN4-209ENST00000469511 RAX2Q96IS3 184 aa4.46□□□□□ -1.7
PTPN4-209ENST00000469511 ANKRD27Q96NW4 1050 aa4.46□□□□□ -1.7
PTPN4-209ENST00000469511 TSSK3Q96PN8 268 aa4.46□□□□□ -1.7
PTPN4-209ENST00000469511 OR7D2Q96RA2 312 aa4.46□□□□□ -1.7
PTPN4-209ENST00000469511 ZNF382Q96SR6 550 aa4.46□□□□□ -1.7
PTPN4-209ENST00000469511 SERINC1Q9NRX5 453 aa4.46□□□□□ -1.7
PTPN4-209ENST00000469511 ZCCHC3Q9NUD5 404 aaKnown RBP4.46□□□□□ -1.7
PTPN4-209ENST00000469511 MKS1Q9NXB0 559 aa4.46□□□□□ -1.7
PTPN4-209ENST00000469511 PLEK2Q9NYT0 353 aa4.46□□□□□ -1.7
PTPN4-209ENST00000469511 C1RLQ9NZP8 487 aa4.46□□□□□ -1.7
PTPN4-209ENST00000469511 TMEM216Q9P0N5 145 aa4.46□□□□□ -1.7
PTPN4-209ENST00000469511 SH3BP4Q9P0V3 963 aa4.46□□□□□ -1.7
PTPN4-209ENST00000469511 TMEM181Q9P2C4 612 aa4.46□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 84.7 ms