RNA–Protein interactions for RNA: ENST00000460593.1

CPSF3-202, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 1 (best) BASIC

Gene CPSF3, Length 3,157 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-202ENST00000460593 ZNF275Q9NSD4 429 aaPredicted RBP10.72□□□□□ -0.69
CPSF3-202ENST00000460593 C14orf105Q9NVL8 296 aa10.72□□□□□ -0.69
CPSF3-202ENST00000460593 DOCK9Q9BZ29 2069 aa10.72□□□□□ -0.69
CPSF3-202ENST00000460593 KANTRA0A1W2PQU2 76 aa10.71□□□□□ -0.69
CPSF3-202ENST00000460593 MCIDASD6RGH6 385 aa10.71□□□□□ -0.69
CPSF3-202ENST00000460593 LYPD3O95274 346 aa10.71□□□□□ -0.69
CPSF3-202ENST00000460593 FARS2O95363 451 aaKnown RBP10.71□□□□□ -0.69
CPSF3-202ENST00000460593 PAK4O96013 591 aaPredicted RBP10.71□□□□□ -0.69
CPSF3-202ENST00000460593 FABP1P07148 127 aa10.71□□□□□ -0.69
CPSF3-202ENST00000460593 C6P13671 934 aa10.71□□□□□ -0.69
CPSF3-202ENST00000460593 CSF2RBP32927 897 aa10.71□□□□□ -0.69
CPSF3-202ENST00000460593 CCR2P41597 374 aa10.71□□□□□ -0.69
CPSF3-202ENST00000460593 PTGFRP43088 359 aa10.71□□□□□ -0.69
CPSF3-202ENST00000460593 ATP1B3P54709 279 aa10.71□□□□□ -0.69
CPSF3-202ENST00000460593 PRKCZQ05513 592 aa10.71□□□□□ -0.69
CPSF3-202ENST00000460593 LTBQ06643 244 aa10.71□□□□□ -0.69
CPSF3-202ENST00000460593 TEAD2Q15562 447 aa10.71□□□□□ -0.69
CPSF3-202ENST00000460593 SLC48A1Q6P1K1 146 aa10.71□□□□□ -0.69
CPSF3-202ENST00000460593 TMEM64Q6YI46 380 aa10.71□□□□□ -0.69
CPSF3-202ENST00000460593 LIN28BQ6ZN17 250 aaKnown RBP eCLIP10.71□□□□□ -0.691e-12■■■■□ 24.4
CPSF3-202ENST00000460593 DND1Q8IYX4 353 aaKnown RBP10.71□□□□□ -0.69
CPSF3-202ENST00000460593 FGF13Q92913 245 aa10.71□□□□□ -0.69
CPSF3-202ENST00000460593 RASD2Q96D21 266 aa10.71□□□□□ -0.69
CPSF3-202ENST00000460593 FAM117AQ9C073 453 aa10.71□□□□□ -0.69
CPSF3-202ENST00000460593 TCF7L1Q9HCS4 588 aa10.71□□□□□ -0.69
CPSF3-202ENST00000460593 APMAPQ9HDC9 416 aa10.71□□□□□ -0.69
CPSF3-202ENST00000460593 MRPS30Q9NP92 439 aaKnown RBP10.71□□□□□ -0.69
CPSF3-202ENST00000460593 CES1P1Q9UKY3 287 aa10.71□□□□□ -0.69
CPSF3-202ENST00000460593 CPED1A4D0V7 1026 aa10.71□□□□□ -0.69
CPSF3-202ENST00000460593 GLSO94925 669 aaPredicted RBP10.71□□□□□ -0.69
CPSF3-202ENST00000460593 MGMTP16455 207 aa10.71□□□□□ -0.69
CPSF3-202ENST00000460593 RFC3P40938 356 aa10.71□□□□□ -0.69
CPSF3-202ENST00000460593 EEF1A1P68104 462 aaKnown RBP10.71□□□□□ -0.69
CPSF3-202ENST00000460593 BTN3A2P78410 334 aa10.71□□□□□ -0.69
CPSF3-202ENST00000460593 PLAURQ03405 335 aa10.71□□□□□ -0.69
CPSF3-202ENST00000460593 TGIF1Q15583 401 aa10.71□□□□□ -0.69
CPSF3-202ENST00000460593 MFSD12Q6NUT3 480 aa10.71□□□□□ -0.69
CPSF3-202ENST00000460593 RPL22L1Q6P5R6 122 aaKnown RBP10.71□□□□□ -0.69
CPSF3-202ENST00000460593 DEFB128Q7Z7B8 93 aa10.71□□□□□ -0.69
CPSF3-202ENST00000460593 RANBP3LQ86VV4 465 aaPredicted RBP10.71□□□□□ -0.69
CPSF3-202ENST00000460593 ZNF761Q86XN6 746 aaPredicted RBP10.71□□□□□ -0.69
CPSF3-202ENST00000460593 CDK20Q8IZL9 346 aa10.71□□□□□ -0.69
CPSF3-202ENST00000460593 SOCS4Q8WXH5 440 aa10.71□□□□□ -0.69
CPSF3-202ENST00000460593 RELTQ969Z4 430 aa10.71□□□□□ -0.69
CPSF3-202ENST00000460593 MRGPRX3Q96LB0 322 aa10.71□□□□□ -0.69
CPSF3-202ENST00000460593 SPSB2Q99619 263 aa10.71□□□□□ -0.69
CPSF3-202ENST00000460593 BCL2L14Q9BZR8 327 aa10.71□□□□□ -0.69
CPSF3-202ENST00000460593 PELI2Q9HAT8 420 aa10.71□□□□□ -0.69
CPSF3-202ENST00000460593 CACYBPQ9HB71 228 aaKnown RBP10.71□□□□□ -0.69
CPSF3-202ENST00000460593 KRCC1Q9NPI7 259 aaPredicted RBP10.71□□□□□ -0.69
CPSF3-202ENST00000460593 APOBEC3BQ9UH17 382 aaKnown RBP10.71□□□□□ -0.69
CPSF3-202ENST00000460593 PLEKHA6Q9Y2H5 1048 aa10.71□□□□□ -0.69
CPSF3-202ENST00000460593 MED31Q9Y3C7 131 aa10.71□□□□□ -0.69
CPSF3-202ENST00000460593 WNT6Q9Y6F9 365 aa10.71□□□□□ -0.69
CPSF3-202ENST00000460593 OR5H14A6NHG9 310 aa10.71□□□□□ -0.7
CPSF3-202ENST00000460593 F5H0A9 414 aaPredicted RBP10.71□□□□□ -0.7
CPSF3-202ENST00000460593 UBBP0CG47 229 aa10.71□□□□□ -0.7
CPSF3-202ENST00000460593 UBCP0CG48 685 aaKnown RBP10.71□□□□□ -0.7
CPSF3-202ENST00000460593 RPS27AP62979 156 aaKnown RBP10.71□□□□□ -0.7
CPSF3-202ENST00000460593 UBA52P62987 128 aaKnown RBP10.71□□□□□ -0.7
CPSF3-202ENST00000460593 ABHD17CQ6PCB6 329 aa10.71□□□□□ -0.7
CPSF3-202ENST00000460593 AMZ2Q86W34 360 aa10.71□□□□□ -0.7
CPSF3-202ENST00000460593 SDF2Q99470 211 aa10.71□□□□□ -0.7
CPSF3-202ENST00000460593 SGIP1Q9BQI5 828 aa10.71□□□□□ -0.7
CPSF3-202ENST00000460593 MENTQ9BUN1 341 aa10.71□□□□□ -0.7
CPSF3-202ENST00000460593 TREM1Q9NP99 234 aa10.71□□□□□ -0.7
CPSF3-202ENST00000460593 STEAP1Q9UHE8 339 aa10.71□□□□□ -0.7
CPSF3-202ENST00000460593 KCNK7Q9Y2U2 307 aa10.71□□□□□ -0.7
CPSF3-202ENST00000460593 KLHDC2Q9Y2U9 406 aa10.71□□□□□ -0.7
CPSF3-202ENST00000460593 MYO15AQ9UKN7 3530 aa10.7□□□□□ -0.7
CPSF3-202ENST00000460593 MEX3AA1L020 520 aaKnown RBP10.7□□□□□ -0.7
CPSF3-202ENST00000460593 ZNF860A6NHJ4 632 aa10.7□□□□□ -0.7
CPSF3-202ENST00000460593 OR52A4PA6NMU1 304 aa10.7□□□□□ -0.7
CPSF3-202ENST00000460593 ZNF705EA8MWA4 302 aaPredicted RBP10.7□□□□□ -0.7
CPSF3-202ENST00000460593 ITGB8P26012 769 aa10.7□□□□□ -0.7
CPSF3-202ENST00000460593 DLSTP36957 453 aa10.7□□□□□ -0.7
CPSF3-202ENST00000460593 VASPP50552 380 aaPredicted RBP10.7□□□□□ -0.7
CPSF3-202ENST00000460593 PRMT2P55345 433 aa10.7□□□□□ -0.7
CPSF3-202ENST00000460593 ST8SIA6P61647 398 aa10.7□□□□□ -0.7
CPSF3-202ENST00000460593 ACTC1P68032 377 aa10.7□□□□□ -0.7
CPSF3-202ENST00000460593 ACTA1P68133 377 aa10.7□□□□□ -0.7
CPSF3-202ENST00000460593 NTHL1P78549 312 aa10.7□□□□□ -0.7
CPSF3-202ENST00000460593 PDZK1IP1Q13113 114 aa10.7□□□□□ -0.7
CPSF3-202ENST00000460593 NR0B2Q15466 257 aa10.7□□□□□ -0.7
CPSF3-202ENST00000460593 SCGB2B2Q4G0G5 96 aa10.7□□□□□ -0.7
CPSF3-202ENST00000460593 TMEM205Q6UW68 189 aa10.7□□□□□ -0.7
CPSF3-202ENST00000460593 OR2L13Q8N349 312 aa10.7□□□□□ -0.7
CPSF3-202ENST00000460593 GLYATL2Q8WU03 294 aa10.7□□□□□ -0.7
CPSF3-202ENST00000460593 MIB2Q96AX9 1013 aa10.7□□□□□ -0.7
CPSF3-202ENST00000460593 C10orf90Q96M02 699 aa10.7□□□□□ -0.7
CPSF3-202ENST00000460593 LMF1Q96S06 567 aa10.7□□□□□ -0.7
CPSF3-202ENST00000460593 UTP23Q9BRU9 249 aaKnown RBP10.7□□□□□ -0.7
CPSF3-202ENST00000460593 SLITRK2Q9H156 845 aa10.7□□□□□ -0.7
CPSF3-202ENST00000460593 MKL2Q9ULH7 1088 aa10.7□□□□□ -0.7
CPSF3-202ENST00000460593 FARSAQ9Y285 508 aaKnown RBP10.7□□□□□ -0.7
CPSF3-202ENST00000460593 ZNF780BQ9Y6R6 833 aa10.7□□□□□ -0.7
CPSF3-202ENST00000460593 SZT2Q5T011 3432 aa10.7□□□□□ -0.7
CPSF3-202ENST00000460593 WASH3PC4AMC7 463 aa10.7□□□□□ -0.7
CPSF3-202ENST00000460593 ZNF749O43361 778 aa10.7□□□□□ -0.7
CPSF3-202ENST00000460593 CTNSO60931 367 aa10.7□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms