RNA–Protein interactions for RNA: ENST00000453046.5

SQSTM1-204, Transcript of sequestosome 1, humanhuman

TSL 4

Gene SQSTM1, Length 572 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-204ENST00000453046 GKN3PP0CG01 181 aa15.98■□□□□ 0.15
SQSTM1-204ENST00000453046 PSMB1P20618 241 aaKnown RBP15.98■□□□□ 0.15
SQSTM1-204ENST00000453046 HTR2AP28223 471 aa15.98■□□□□ 0.15
SQSTM1-204ENST00000453046 RYKP34925 604 aa15.98■□□□□ 0.15
SQSTM1-204ENST00000453046 ACAA2P42765 397 aaKnown RBP15.98■□□□□ 0.15
SQSTM1-204ENST00000453046 LIMS1P48059 325 aa15.98■□□□□ 0.15
SQSTM1-204ENST00000453046 HMGA2P52926 109 aa15.98■□□□□ 0.15
SQSTM1-204ENST00000453046 NR1H2P55055 460 aa15.98■□□□□ 0.15
SQSTM1-204ENST00000453046 ST3GAL3Q11203 375 aa15.98■□□□□ 0.15
SQSTM1-204ENST00000453046 PIN1Q13526 163 aaPredicted RBP15.98■□□□□ 0.15
SQSTM1-204ENST00000453046 ZNF613Q6PF04 617 aa15.98■□□□□ 0.15
SQSTM1-204ENST00000453046 TFAP2EQ6VUC0 442 aa15.98■□□□□ 0.15
SQSTM1-204ENST00000453046 C20orf204Q6ZNR8 217 aa15.98■□□□□ 0.15
SQSTM1-204ENST00000453046 ZBTB49Q6ZSB9 765 aa15.98■□□□□ 0.15
SQSTM1-204ENST00000453046 CXorf67Q86X51 503 aaPredicted RBP15.98■□□□□ 0.15
SQSTM1-204ENST00000453046 LSMEM1Q8N8F7 131 aa15.98■□□□□ 0.15
SQSTM1-204ENST00000453046 ADAMTS16Q8TE57 1224 aa15.98■□□□□ 0.15
SQSTM1-204ENST00000453046 PSD2Q9BQI7 771 aa15.98■□□□□ 0.15
SQSTM1-204ENST00000453046 HDHD5Q9BXW7 423 aa15.98■□□□□ 0.15
SQSTM1-204ENST00000453046 OR10A4Q9H209 315 aa15.98■□□□□ 0.15
SQSTM1-204ENST00000453046 ACER3Q9NUN7 267 aa15.98■□□□□ 0.15
SQSTM1-204ENST00000453046 U3KQV3 271 aa15.98■□□□□ 0.15
SQSTM1-204ENST00000453046 FLNAP21333 2647 aaKnown RBP15.98■□□□□ 0.15
SQSTM1-204ENST00000453046 CPSF4LA6NMK7 179 aaKnown RBP15.97■□□□□ 0.15
SQSTM1-204ENST00000453046 KLF4O43474 513 aa15.97■□□□□ 0.15
SQSTM1-204ENST00000453046 HPRP00739 348 aa15.97■□□□□ 0.15
SQSTM1-204ENST00000453046 TFPIP10646 304 aa15.97■□□□□ 0.15
SQSTM1-204ENST00000453046 PRG2P13727 222 aa15.97■□□□□ 0.15
SQSTM1-204ENST00000453046 IL32P24001 234 aa15.97■□□□□ 0.15
SQSTM1-204ENST00000453046 RASGEF1BQ0VAM2 473 aa15.97■□□□□ 0.15
SQSTM1-204ENST00000453046 TRAM2Q15035 370 aa15.97■□□□□ 0.15
SQSTM1-204ENST00000453046 LRRC36Q1X8D7 754 aa15.97■□□□□ 0.15
SQSTM1-204ENST00000453046 SWT1Q5T5J6 900 aaKnown RBP15.97■□□□□ 0.15
SQSTM1-204ENST00000453046 TSPYL5Q86VY4 417 aaPredicted RBP15.97■□□□□ 0.15
SQSTM1-204ENST00000453046 CBR4Q8N4T8 237 aa15.97■□□□□ 0.15
SQSTM1-204ENST00000453046 PLPPR2Q96GM1 343 aa15.97■□□□□ 0.15
SQSTM1-204ENST00000453046 SLC41A3Q96GZ6 507 aa15.97■□□□□ 0.15
SQSTM1-204ENST00000453046 TMEM27Q9HBJ8 222 aa15.97■□□□□ 0.15
SQSTM1-204ENST00000453046 DLL4Q9NR61 685 aa15.97■□□□□ 0.15
SQSTM1-204ENST00000453046 MAN2C1Q9NTJ4 1040 aa15.97■□□□□ 0.15
SQSTM1-204ENST00000453046 SPIN1Q9Y657 262 aaPredicted RBP15.97■□□□□ 0.15
SQSTM1-204ENST00000453046 NF1P21359 2839 aa15.96■□□□□ 0.15
SQSTM1-204ENST00000453046 A0A0B4J2E0 115 aa15.96■□□□□ 0.15
SQSTM1-204ENST00000453046 A0A1B0GX12 115 aa15.96■□□□□ 0.15
SQSTM1-204ENST00000453046 H0YJX3 145 aa15.96■□□□□ 0.15
SQSTM1-204ENST00000453046 SULT2B1O00204 365 aa15.96■□□□□ 0.15
SQSTM1-204ENST00000453046 EI24O14681 340 aa15.96■□□□□ 0.15
SQSTM1-204ENST00000453046 LOXP28300 417 aaPredicted RBP15.96■□□□□ 0.15
SQSTM1-204ENST00000453046 APOBEC1P41238 236 aaKnown RBP15.96■□□□□ 0.15
SQSTM1-204ENST00000453046 COPZ1P61923 177 aa15.96■□□□□ 0.15
SQSTM1-204ENST00000453046 CSNK2A1P68400 391 aaPredicted RBP15.96■□□□□ 0.15
SQSTM1-204ENST00000453046 HOXC5Q00444 222 aa15.96■□□□□ 0.15
SQSTM1-204ENST00000453046 DAG1Q14118 895 aa15.96■□□□□ 0.15
SQSTM1-204ENST00000453046 OR1Q1Q15612 314 aa15.96■□□□□ 0.15
SQSTM1-204ENST00000453046 SYT14P1Q58G82 188 aa15.96■□□□□ 0.15
SQSTM1-204ENST00000453046 FGD3Q5JSP0 725 aa15.96■□□□□ 0.15
SQSTM1-204ENST00000453046 Q5PR19 223 aa15.96■□□□□ 0.15
SQSTM1-204ENST00000453046 ZNF704Q6ZNC4 412 aaPredicted RBP15.96■□□□□ 0.15
SQSTM1-204ENST00000453046 TMEM179BQ7Z7N9 219 aa15.96■□□□□ 0.15
SQSTM1-204ENST00000453046 LRRC75A-AS1Q8N1F1 130 aa15.96■□□□□ 0.15
SQSTM1-204ENST00000453046 LINC00471Q8N535 108 aa15.96■□□□□ 0.15
SQSTM1-204ENST00000453046 SLC25A43Q8WUT9 341 aaPredicted RBP15.96■□□□□ 0.15
SQSTM1-204ENST00000453046 S100PBPQ96BU1 408 aa15.96■□□□□ 0.15
SQSTM1-204ENST00000453046 RBM4BQ9BQ04 359 aaKnown RBP15.96■□□□□ 0.15
SQSTM1-204ENST00000453046 FUZQ9BT04 418 aa15.96■□□□□ 0.15
SQSTM1-204ENST00000453046 RBM4Q9BWF3 364 aaKnown RBP15.96■□□□□ 0.15
SQSTM1-204ENST00000453046 GSX1Q9H4S2 264 aaPredicted RBP15.96■□□□□ 0.15
SQSTM1-204ENST00000453046 USE1Q9NZ43 259 aa15.96■□□□□ 0.15
SQSTM1-204ENST00000453046 TMCC3Q9ULS5 477 aa15.96■□□□□ 0.15
SQSTM1-204ENST00000453046 TRBV4-1A0A0J9YWV2 114 aa15.95■□□□□ 0.14
SQSTM1-204ENST00000453046 PDLIM1O00151 329 aa15.95■□□□□ 0.14
SQSTM1-204ENST00000453046 SOCS2O14508 198 aa15.95■□□□□ 0.14
SQSTM1-204ENST00000453046 CHP2O43745 196 aa15.95■□□□□ 0.14
SQSTM1-204ENST00000453046 ADAM11O75078 769 aa15.95■□□□□ 0.14
SQSTM1-204ENST00000453046 ADAP00813 363 aa15.95■□□□□ 0.14
SQSTM1-204ENST00000453046 ZNF26P17031 533 aaPredicted RBP15.95■□□□□ 0.14
SQSTM1-204ENST00000453046 DIO1P49895 249 aa15.95■□□□□ 0.14
SQSTM1-204ENST00000453046 ALDH3A2P51648 485 aa15.95■□□□□ 0.14
SQSTM1-204ENST00000453046 PPP2R2BQ00005 443 aa15.95■□□□□ 0.14
SQSTM1-204ENST00000453046 TSC22D1Q15714 1073 aa15.95■□□□□ 0.14
SQSTM1-204ENST00000453046 SFRP5Q5T4F7 317 aa15.95■□□□□ 0.14
SQSTM1-204ENST00000453046 IZUMO2Q6UXV1 221 aa15.95■□□□□ 0.14
SQSTM1-204ENST00000453046 TMPPEQ6ZT21 453 aa15.95■□□□□ 0.14
SQSTM1-204ENST00000453046 GABRG1Q8N1C3 465 aa15.95■□□□□ 0.14
SQSTM1-204ENST00000453046 OR10G2Q8NGC3 310 aa15.95■□□□□ 0.14
SQSTM1-204ENST00000453046 GIPC3Q8TF64 312 aa15.95■□□□□ 0.14
SQSTM1-204ENST00000453046 DNAJA4Q8WW22 397 aaPredicted RBP15.95■□□□□ 0.14
SQSTM1-204ENST00000453046 KISS1RQ969F8 398 aaPredicted RBP15.95■□□□□ 0.14
SQSTM1-204ENST00000453046 ZNF775Q96BV0 537 aaPredicted RBP15.95■□□□□ 0.14
SQSTM1-204ENST00000453046 ZHX1-C8orf76Q96EF9 292 aa15.95■□□□□ 0.14
SQSTM1-204ENST00000453046 C18orf12Q96KH6 178 aa15.95■□□□□ 0.14
SQSTM1-204ENST00000453046 RDH12Q96NR8 316 aa15.95■□□□□ 0.14
SQSTM1-204ENST00000453046 ZNF184Q99676 751 aaPredicted RBP15.95■□□□□ 0.14
SQSTM1-204ENST00000453046 BCO1Q9HAY6 547 aa15.95■□□□□ 0.14
SQSTM1-204ENST00000453046 NGBQ9NPG2 151 aa15.95■□□□□ 0.14
SQSTM1-204ENST00000453046 CTPS2Q9NRF8 586 aa15.95■□□□□ 0.14
SQSTM1-204ENST00000453046 PDP1Q9P0J1 537 aaPredicted RBP15.95■□□□□ 0.14
SQSTM1-204ENST00000453046 RHCGQ9UBD6 479 aa15.95■□□□□ 0.14
SQSTM1-204ENST00000453046 A0A1B0GWA3 101 aa15.94■□□□□ 0.14
SQSTM1-204ENST00000453046 SMAD9O15198 467 aaKnown RBP15.94■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms