RNA–Protein interactions for RNA: ENST00000448038.2

SYNE1-213, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 6,001 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-213ENST00000448038 ARL5BQ96KC2 179 aa6.78□□□□□ -1.32
SYNE1-213ENST00000448038 EMC6Q9BV81 110 aa6.78□□□□□ -1.32
SYNE1-213ENST00000448038 CHST11Q9NPF2 352 aa6.78□□□□□ -1.32
SYNE1-213ENST00000448038 GPATCH2Q9NW75 528 aa6.78□□□□□ -1.32
SYNE1-213ENST00000448038 TAS2R16Q9NYV7 291 aa6.78□□□□□ -1.32
SYNE1-213ENST00000448038 ZNF69Q9UC07 566 aa6.78□□□□□ -1.32
SYNE1-213ENST00000448038 MGAMO43451 1857 aa6.78□□□□□ -1.32
SYNE1-213ENST00000448038 TTLL8A6PVC2 850 aa6.78□□□□□ -1.32
SYNE1-213ENST00000448038 ANKRD30BLA7E2S9 258 aa6.78□□□□□ -1.32
SYNE1-213ENST00000448038 KLK10O43240 276 aa6.78□□□□□ -1.32
SYNE1-213ENST00000448038 IGFBP1P08833 259 aaPredicted RBP6.78□□□□□ -1.32
SYNE1-213ENST00000448038 PPIAP62937 165 aaKnown RBP6.78□□□□□ -1.32
SYNE1-213ENST00000448038 ZNF620Q6ZNG0 422 aa6.78□□□□□ -1.32
SYNE1-213ENST00000448038 ANKRD37Q7Z713 158 aa6.78□□□□□ -1.32
SYNE1-213ENST00000448038 LINC00346Q8IVM7 164 aa6.78□□□□□ -1.32
SYNE1-213ENST00000448038 OR5L1Q8NGL2 311 aa6.78□□□□□ -1.32
SYNE1-213ENST00000448038 HAVCR1Q96D42 359 aa6.78□□□□□ -1.32
SYNE1-213ENST00000448038 MNTQ99583 582 aa6.78□□□□□ -1.32
SYNE1-213ENST00000448038 ERVK13-1Q9NX77 482 aa6.78□□□□□ -1.32
SYNE1-213ENST00000448038 CDHR4A6H8M9 788 aa6.78□□□□□ -1.32
SYNE1-213ENST00000448038 HRO43593 1189 aa6.78□□□□□ -1.32
SYNE1-213ENST00000448038 CAPNS1P04632 268 aa6.78□□□□□ -1.32
SYNE1-213ENST00000448038 CCL4P13236 92 aa6.78□□□□□ -1.32
SYNE1-213ENST00000448038 NPR2P20594 1047 aa6.78□□□□□ -1.32
SYNE1-213ENST00000448038 DMWDQ09019 674 aa6.78□□□□□ -1.32
SYNE1-213ENST00000448038 THOC7Q6I9Y2 204 aaKnown RBP6.78□□□□□ -1.32
SYNE1-213ENST00000448038 NARS2Q96I59 477 aaKnown RBP6.78□□□□□ -1.32
SYNE1-213ENST00000448038 METTL8Q9H825 291 aaKnown RBP6.78□□□□□ -1.32
SYNE1-213ENST00000448038 MEMO1Q9Y316 297 aa6.78□□□□□ -1.32
SYNE1-213ENST00000448038 ZNF587BE7ETH6 402 aa6.77□□□□□ -1.33
SYNE1-213ENST00000448038 EFEMP2O95967 443 aa6.77□□□□□ -1.33
SYNE1-213ENST00000448038 PTHP01270 115 aa6.77□□□□□ -1.33
SYNE1-213ENST00000448038 PEBP1P30086 187 aaKnown RBP6.77□□□□□ -1.33
SYNE1-213ENST00000448038 RFC3P40938 356 aa6.77□□□□□ -1.33
SYNE1-213ENST00000448038 CD97P48960 835 aa6.77□□□□□ -1.33
SYNE1-213ENST00000448038 SNRPGP62308 76 aaKnown RBP6.77□□□□□ -1.33
SYNE1-213ENST00000448038 NKG7Q16617 165 aa6.77□□□□□ -1.33
SYNE1-213ENST00000448038 ANKRD34AQ69YU3 496 aa6.77□□□□□ -1.33
SYNE1-213ENST00000448038 ZNF585AQ6P3V2 769 aa6.77□□□□□ -1.33
SYNE1-213ENST00000448038 PRSS42Q7Z5A4 293 aa6.77□□□□□ -1.33
SYNE1-213ENST00000448038 ZNF454Q8N9F8 522 aa6.77□□□□□ -1.33
SYNE1-213ENST00000448038 OR52I1Q8NGK6 324 aa6.77□□□□□ -1.33
SYNE1-213ENST00000448038 BEX2Q9BXY8 128 aa6.77□□□□□ -1.33
SYNE1-213ENST00000448038 BEX1Q9HBH7 125 aa6.77□□□□□ -1.33
SYNE1-213ENST00000448038 KLHL9Q9P2J3 617 aa6.77□□□□□ -1.33
SYNE1-213ENST00000448038 DIMT1Q9UNQ2 313 aaKnown RBP6.77□□□□□ -1.33
SYNE1-213ENST00000448038 ZNF281Q9Y2X9 895 aa6.77□□□□□ -1.33
SYNE1-213ENST00000448038 PCDHGA5Q9Y5G8 931 aa6.77□□□□□ -1.33
SYNE1-213ENST00000448038 PCYT1BQ9Y5K3 369 aaPredicted RBP6.77□□□□□ -1.33
SYNE1-213ENST00000448038 TRAV6A0A075B6T7 132 aa6.77□□□□□ -1.33
SYNE1-213ENST00000448038 FAM230AA0A1W2PPH8 454 aa6.77□□□□□ -1.33
SYNE1-213ENST00000448038 MPIG6BO95866 241 aa6.77□□□□□ -1.33
SYNE1-213ENST00000448038 WNT1P04628 370 aa6.77□□□□□ -1.33
SYNE1-213ENST00000448038 HSF1Q00613 529 aa6.77□□□□□ -1.33
SYNE1-213ENST00000448038 ACSM5Q6NUN0 579 aa6.77□□□□□ -1.33
SYNE1-213ENST00000448038 KIRREL2Q6UWL6 708 aa6.77□□□□□ -1.33
SYNE1-213ENST00000448038 ZNF813Q6ZN06 617 aa6.77□□□□□ -1.33
SYNE1-213ENST00000448038 UBE3DQ7Z6J8 389 aa6.77□□□□□ -1.33
SYNE1-213ENST00000448038 SLC25A44Q96H78 314 aaPredicted RBP6.77□□□□□ -1.33
SYNE1-213ENST00000448038 MRGPRX4Q96LA9 322 aa6.77□□□□□ -1.33
SYNE1-213ENST00000448038 DMRTB1Q96MA1 342 aa6.77□□□□□ -1.33
SYNE1-213ENST00000448038 FAM86C1Q9NVL1 165 aa6.77□□□□□ -1.33
SYNE1-213ENST00000448038 TRAV18A0A075B6X5 111 aa6.77□□□□□ -1.33
SYNE1-213ENST00000448038 IGHV5-10-1A0A0J9YXX1 117 aa6.77□□□□□ -1.33
SYNE1-213ENST00000448038 GPRIN2O60269 458 aa6.77□□□□□ -1.33
SYNE1-213ENST00000448038 GLCEO94923 617 aa6.77□□□□□ -1.33
SYNE1-213ENST00000448038 IFNA21P01568 189 aa6.77□□□□□ -1.33
SYNE1-213ENST00000448038 AMY2BP19961 511 aa6.77□□□□□ -1.33
SYNE1-213ENST00000448038 RELAQ04206 551 aa6.77□□□□□ -1.33
SYNE1-213ENST00000448038 GPR50Q13585 617 aa6.77□□□□□ -1.33
SYNE1-213ENST00000448038 FGFBP1Q14512 234 aa6.77□□□□□ -1.33
SYNE1-213ENST00000448038 SLC36A2Q495M3 483 aa6.77□□□□□ -1.33
SYNE1-213ENST00000448038 CDNFQ49AH0 187 aa6.77□□□□□ -1.33
SYNE1-213ENST00000448038 MFRPQ9BY79 579 aa6.77□□□□□ -1.33
SYNE1-213ENST00000448038 ACTR6Q9GZN1 396 aa6.77□□□□□ -1.33
SYNE1-213ENST00000448038 GABARAPL1Q9H0R8 117 aa6.77□□□□□ -1.33
SYNE1-213ENST00000448038 ZNF768Q9H5H4 540 aaKnown RBP6.77□□□□□ -1.33
SYNE1-213ENST00000448038 C12orf49Q9H741 205 aa6.77□□□□□ -1.33
SYNE1-213ENST00000448038 FKRPQ9H9S5 495 aa6.77□□□□□ -1.33
SYNE1-213ENST00000448038 NOP16Q9Y3C1 178 aaKnown RBP6.77□□□□□ -1.33
SYNE1-213ENST00000448038 B3GALT1Q9Y5Z6 326 aa6.77□□□□□ -1.33
SYNE1-213ENST00000448038 ZSWIM8A7E2V4 1837 aa6.77□□□□□ -1.33
SYNE1-213ENST00000448038 MKRN2OSH3BPM6 223 aa6.77□□□□□ -1.33
SYNE1-213ENST00000448038 CRTAPO75718 401 aaPredicted RBP6.77□□□□□ -1.33
SYNE1-213ENST00000448038 VAMP5O95183 116 aa6.77□□□□□ -1.33
SYNE1-213ENST00000448038 RLN2P04090 185 aa6.77□□□□□ -1.33
SYNE1-213ENST00000448038 TBXA2RP21731 343 aa6.77□□□□□ -1.33
SYNE1-213ENST00000448038 ARHGDIBP52566 201 aa6.77□□□□□ -1.33
SYNE1-213ENST00000448038 SLC35D3Q5M8T2 416 aa6.77□□□□□ -1.33
SYNE1-213ENST00000448038 TMEM179BQ7Z7N9 219 aa6.77□□□□□ -1.33
SYNE1-213ENST00000448038 ANKRD13BQ86YJ7 626 aa6.77□□□□□ -1.33
SYNE1-213ENST00000448038 MUL1Q969V5 352 aa6.77□□□□□ -1.33
SYNE1-213ENST00000448038 FBXL4Q9UKA2 621 aa6.77□□□□□ -1.33
SYNE1-213ENST00000448038 WASF3Q9UPY6 502 aa6.77□□□□□ -1.33
SYNE1-213ENST00000448038 ADAM18Q9Y3Q7 739 aa6.77□□□□□ -1.33
SYNE1-213ENST00000448038 CCL27Q9Y4X3 112 aa6.77□□□□□ -1.33
SYNE1-213ENST00000448038 EEF1E1-BLOC1S5C9J1V9 151 aa6.77□□□□□ -1.33
SYNE1-213ENST00000448038 ZNF701M0R085 212 aaPredicted RBP6.77□□□□□ -1.33
SYNE1-213ENST00000448038 GABRPO00591 440 aa6.77□□□□□ -1.33
SYNE1-213ENST00000448038 IGHV3-9P01782 118 aa6.77□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms