RNA–Protein interactions for RNA: ENST00000437679.3

LIMS3-201, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene LIMS3, Length 1,220 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-201ENST00000437679 MS4A18Q3C1V0 323 aa13.34□□□□□ -0.27
LIMS3-201ENST00000437679 C1QTNF12Q5T7M4 302 aa13.34□□□□□ -0.27
LIMS3-201ENST00000437679 HMBOX1Q6NT76 420 aa13.34□□□□□ -0.27
LIMS3-201ENST00000437679 ADAM5Q6NVV9 412 aa13.34□□□□□ -0.27
LIMS3-201ENST00000437679 C8orf82Q6P1X6 216 aaPredicted RBP13.34□□□□□ -0.27
LIMS3-201ENST00000437679 TMEM108Q6UXF1 575 aa13.34□□□□□ -0.27
LIMS3-201ENST00000437679 WDR88Q6ZMY6 472 aa13.34□□□□□ -0.27
LIMS3-201ENST00000437679 TSPYL5Q86VY4 417 aaPredicted RBP13.34□□□□□ -0.27
LIMS3-201ENST00000437679 GPR137CQ8N3F9 429 aa13.34□□□□□ -0.27
LIMS3-201ENST00000437679 OR5J2Q8NH18 312 aa13.34□□□□□ -0.27
LIMS3-201ENST00000437679 ALKBH3Q96Q83 286 aaPredicted RBP13.34□□□□□ -0.27
LIMS3-201ENST00000437679 SLC19A3Q9BZV2 496 aa13.34□□□□□ -0.27
LIMS3-201ENST00000437679 ALG2Q9H553 416 aa13.34□□□□□ -0.27
LIMS3-201ENST00000437679 NPAP1Q9NZP6 1156 aa13.34□□□□□ -0.27
LIMS3-201ENST00000437679 MGAT4BQ9UQ53 548 aa13.34□□□□□ -0.27
LIMS3-201ENST00000437679 NOX1Q9Y5S8 564 aa13.34□□□□□ -0.27
LIMS3-201ENST00000437679 MAGED1Q9Y5V3 778 aaPredicted RBP13.34□□□□□ -0.27
LIMS3-201ENST00000437679 HEATR1Q9H583 2144 aaKnown RBP13.34□□□□□ -0.27
LIMS3-201ENST00000437679 CXCR6O00574 342 aa13.33□□□□□ -0.28
LIMS3-201ENST00000437679 KPNA4O00629 521 aaPredicted RBP13.33□□□□□ -0.28
LIMS3-201ENST00000437679 PLPP3O14495 311 aa13.33□□□□□ -0.28
LIMS3-201ENST00000437679 TRAF3IP2O43734 574 aaPredicted RBP13.33□□□□□ -0.28
LIMS3-201ENST00000437679 UPK3AO75631 287 aa13.33□□□□□ -0.28
LIMS3-201ENST00000437679 ZNF432O94892 652 aa13.33□□□□□ -0.28
LIMS3-201ENST00000437679 OR5F1O95221 314 aa13.33□□□□□ -0.28
LIMS3-201ENST00000437679 CH25HO95992 272 aa13.33□□□□□ -0.28
LIMS3-201ENST00000437679 WNT11O96014 354 aa13.33□□□□□ -0.28
LIMS3-201ENST00000437679 HPRP00739 348 aa13.33□□□□□ -0.28
LIMS3-201ENST00000437679 HIST1H2ABP04908 130 aa13.33□□□□□ -0.28
LIMS3-201ENST00000437679 AHCYP23526 432 aa13.33□□□□□ -0.28
LIMS3-201ENST00000437679 PTAFRP25105 342 aa13.33□□□□□ -0.28
LIMS3-201ENST00000437679 IFNA8P32881 189 aa13.33□□□□□ -0.28
LIMS3-201ENST00000437679 GSK3BP49841 420 aa13.33□□□□□ -0.28
LIMS3-201ENST00000437679 PRPS1P60891 318 aa13.33□□□□□ -0.28
LIMS3-201ENST00000437679 PSME3P61289 254 aa13.33□□□□□ -0.28
LIMS3-201ENST00000437679 POU3F1Q03052 451 aaPredicted RBP13.33□□□□□ -0.28
LIMS3-201ENST00000437679 ZNF74Q16587 644 aa13.33□□□□□ -0.28
LIMS3-201ENST00000437679 ZNF672Q499Z4 452 aaPredicted RBP13.33□□□□□ -0.28
LIMS3-201ENST00000437679 HIST3H2AQ7L7L0 130 aa13.33□□□□□ -0.28
LIMS3-201ENST00000437679 TGIF2LYQ8IUE0 185 aa13.33□□□□□ -0.28
LIMS3-201ENST00000437679 LRRC75A-AS1Q8N1F1 130 aa13.33□□□□□ -0.28
LIMS3-201ENST00000437679 WDR31Q8NA23 367 aa13.33□□□□□ -0.28
LIMS3-201ENST00000437679 PIK3C3Q8NEB9 887 aa13.33□□□□□ -0.28
LIMS3-201ENST00000437679 KBTBD8Q8NFY9 601 aa13.33□□□□□ -0.28
LIMS3-201ENST00000437679 TMEM171Q8WVE6 324 aa13.33□□□□□ -0.28
LIMS3-201ENST00000437679 HIST1H2ACQ93077 130 aa13.33□□□□□ -0.28
LIMS3-201ENST00000437679 FBXW5Q969U6 566 aa13.33□□□□□ -0.28
LIMS3-201ENST00000437679 RADILQ96JH8 1075 aa13.33□□□□□ -0.28
LIMS3-201ENST00000437679 KCTD14Q9BQ13 255 aaPredicted RBP13.33□□□□□ -0.28
LIMS3-201ENST00000437679 ZNF426Q9BUY5 554 aa13.33□□□□□ -0.28
LIMS3-201ENST00000437679 FKRPQ9H9S5 495 aa13.33□□□□□ -0.28
LIMS3-201ENST00000437679 NANSQ9NR45 359 aa13.33□□□□□ -0.28
LIMS3-201ENST00000437679 GMPR2Q9P2T1 348 aaKnown RBP13.33□□□□□ -0.28
LIMS3-201ENST00000437679 RIMS3Q9UJD0 308 aa13.33□□□□□ -0.28
LIMS3-201ENST00000437679 ARL2BPQ9Y2Y0 163 aa13.33□□□□□ -0.28
LIMS3-201ENST00000437679 PLCE1Q9P212 2302 aa13.33□□□□□ -0.28
LIMS3-201ENST00000437679 ZNF726A6NNF4 738 aa13.32□□□□□ -0.28
LIMS3-201ENST00000437679 M0R1B8 84 aa13.32□□□□□ -0.28
LIMS3-201ENST00000437679 ABCD4O14678 606 aa13.32□□□□□ -0.28
LIMS3-201ENST00000437679 ARHGEF9O43307 516 aa13.32□□□□□ -0.28
LIMS3-201ENST00000437679 TMCC2O75069 709 aa13.32□□□□□ -0.28
LIMS3-201ENST00000437679 ADORA3P0DMS8 318 aa13.32□□□□□ -0.28
LIMS3-201ENST00000437679 THRBP10828 461 aa13.32□□□□□ -0.28
LIMS3-201ENST00000437679 RBM34P42696 430 aaKnown RBP13.32□□□□□ -0.28
LIMS3-201ENST00000437679 SH3BGRP55822 239 aaPredicted RBP13.32□□□□□ -0.28
LIMS3-201ENST00000437679 UBE2NP61088 152 aaKnown RBP13.32□□□□□ -0.28
LIMS3-201ENST00000437679 NKX6-1P78426 367 aaPredicted RBP13.32□□□□□ -0.28
LIMS3-201ENST00000437679 ROR2Q01974 943 aaKnown RBP13.32□□□□□ -0.28
LIMS3-201ENST00000437679 PIN1Q13526 163 aaPredicted RBP13.32□□□□□ -0.28
LIMS3-201ENST00000437679 SHEQ5VZ18 495 aa13.32□□□□□ -0.28
LIMS3-201ENST00000437679 PXKQ7Z7A4 578 aa13.32□□□□□ -0.28
LIMS3-201ENST00000437679 PIGWQ7Z7B1 504 aa13.32□□□□□ -0.28
LIMS3-201ENST00000437679 ANKK1Q8NFD2 765 aa13.32□□□□□ -0.28
LIMS3-201ENST00000437679 OR1K1Q8NGR3 316 aa13.32□□□□□ -0.28
LIMS3-201ENST00000437679 LILRB1Q8NHL6 650 aaPredicted RBP13.32□□□□□ -0.28
LIMS3-201ENST00000437679 OR2M2Q96R28 347 aa13.32□□□□□ -0.28
LIMS3-201ENST00000437679 PRSS27Q9BQR3 290 aa13.32□□□□□ -0.28
LIMS3-201ENST00000437679 C1QTNF6Q9BXI9 259 aa13.32□□□□□ -0.28
LIMS3-201ENST00000437679 CXorf56Q9H5V9 222 aa13.32□□□□□ -0.28
LIMS3-201ENST00000437679 SPAG4Q9NPE6 437 aa13.32□□□□□ -0.28
LIMS3-201ENST00000437679 OBP2BQ9NPH6 170 aa13.32□□□□□ -0.28
LIMS3-201ENST00000437679 ZNF229Q9UJW7 825 aa13.32□□□□□ -0.28
LIMS3-201ENST00000437679 USF3Q68DE3 2245 aa13.32□□□□□ -0.28
LIMS3-201ENST00000437679 C11orf98E9PRG8 122 aa13.31□□□□□ -0.28
LIMS3-201ENST00000437679 RPL36A-HNRNPH2H7BZ11 118 aa13.31□□□□□ -0.28
LIMS3-201ENST00000437679 SERPINI2O75830 405 aa13.31□□□□□ -0.28
LIMS3-201ENST00000437679 DCTN3O75935 186 aa13.31□□□□□ -0.28
LIMS3-201ENST00000437679 ZNF682O95780 498 aa13.31□□□□□ -0.28
LIMS3-201ENST00000437679 UMPSP11172 480 aa13.31□□□□□ -0.28
LIMS3-201ENST00000437679 HLA-DOBP13765 273 aa13.31□□□□□ -0.28
LIMS3-201ENST00000437679 CD99P14209 185 aa13.31□□□□□ -0.28
LIMS3-201ENST00000437679 PAX7P23759 505 aa13.31□□□□□ -0.28
LIMS3-201ENST00000437679 CD40P25942 277 aa13.31□□□□□ -0.28
LIMS3-201ENST00000437679 ADAM8P78325 824 aa13.31□□□□□ -0.28
LIMS3-201ENST00000437679 FOXD4Q12950 439 aaPredicted RBP13.31□□□□□ -0.28
LIMS3-201ENST00000437679 TBRG1Q3YBR2 411 aa13.31□□□□□ -0.28
LIMS3-201ENST00000437679 HIKESHIQ53FT3 197 aa13.31□□□□□ -0.28
LIMS3-201ENST00000437679 CARD17Q5XLA6 110 aa13.31□□□□□ -0.28
LIMS3-201ENST00000437679 SLC22A25Q6T423 547 aa13.31□□□□□ -0.28
LIMS3-201ENST00000437679 LINGO2Q7L985 606 aa13.31□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms