RNA–Protein interactions for RNA: ENST00000422245.5

SQSTM1-203, Transcript of sequestosome 1, humanhuman

TSL 4

Gene SQSTM1, Length 628 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-203ENST00000422245 LOC102725191A0A1B0GVB3 256 aa10.05□□□□□ -0.8
SQSTM1-203ENST00000422245 A0A1W2PPZ6 126 aa10.05□□□□□ -0.8
SQSTM1-203ENST00000422245 B9A039 149 aa10.05□□□□□ -0.8
SQSTM1-203ENST00000422245 TRAF3IP2O43734 574 aaPredicted RBP10.05□□□□□ -0.8
SQSTM1-203ENST00000422245 IGKV3-15P01624 115 aa10.05□□□□□ -0.8
SQSTM1-203ENST00000422245 GRPRP30550 384 aa10.05□□□□□ -0.8
SQSTM1-203ENST00000422245 IDH3AP50213 366 aa10.05□□□□□ -0.8
SQSTM1-203ENST00000422245 ATP4BP51164 291 aa10.05□□□□□ -0.8
SQSTM1-203ENST00000422245 RGS8P57771 180 aaPredicted RBP10.05□□□□□ -0.8
SQSTM1-203ENST00000422245 SCARB2Q14108 478 aa10.05□□□□□ -0.8
SQSTM1-203ENST00000422245 ADIPOQQ15848 244 aa10.05□□□□□ -0.8
SQSTM1-203ENST00000422245 MST1LQ2TV78 715 aa10.05□□□□□ -0.8
SQSTM1-203ENST00000422245 SWT1Q5T5J6 900 aaKnown RBP10.05□□□□□ -0.8
SQSTM1-203ENST00000422245 ULK3Q6PHR2 472 aa10.05□□□□□ -0.8
SQSTM1-203ENST00000422245 H1FNTQ75WM6 255 aaPredicted RBP10.05□□□□□ -0.8
SQSTM1-203ENST00000422245 FUNDC1Q8IVP5 155 aa10.05□□□□□ -0.8
SQSTM1-203ENST00000422245 CCDC36Q8IYA8 594 aa10.05□□□□□ -0.8
SQSTM1-203ENST00000422245 KDM8Q8N371 416 aa10.05□□□□□ -0.8
SQSTM1-203ENST00000422245 SCAIQ8N9R8 606 aa10.05□□□□□ -0.8
SQSTM1-203ENST00000422245 PIK3C3Q8NEB9 887 aa10.05□□□□□ -0.8
SQSTM1-203ENST00000422245 NUP37Q8NFH4 326 aa10.05□□□□□ -0.8
SQSTM1-203ENST00000422245 OR6S1Q8NH40 331 aa10.05□□□□□ -0.8
SQSTM1-203ENST00000422245 NANOS1Q8WY41 292 aaKnown RBP10.05□□□□□ -0.8
SQSTM1-203ENST00000422245 SLC47A1Q96FL8 570 aa10.05□□□□□ -0.8
SQSTM1-203ENST00000422245 SORCS2Q96PQ0 1159 aa10.05□□□□□ -0.8
SQSTM1-203ENST00000422245 OR2M2Q96R28 347 aa10.05□□□□□ -0.8
SQSTM1-203ENST00000422245 ZNF607Q96SK3 696 aa10.05□□□□□ -0.8
SQSTM1-203ENST00000422245 EBF4Q9BQW3 602 aa10.05□□□□□ -0.8
SQSTM1-203ENST00000422245 ZNF442Q9H7R0 627 aa10.05□□□□□ -0.8
SQSTM1-203ENST00000422245 CCDC167Q9P0B6 97 aa10.05□□□□□ -0.8
SQSTM1-203ENST00000422245 VAPAQ9P0L0 249 aa10.05□□□□□ -0.8
SQSTM1-203ENST00000422245 LPAR3Q9UBY5 353 aa10.05□□□□□ -0.8
SQSTM1-203ENST00000422245 SEC14L4Q9UDX3 406 aa10.05□□□□□ -0.8
SQSTM1-203ENST00000422245 NIPSNAP3AQ9UFN0 247 aaPredicted RBP10.05□□□□□ -0.8
SQSTM1-203ENST00000422245 SLC13A4Q9UKG4 626 aa10.05□□□□□ -0.8
SQSTM1-203ENST00000422245 ANGPT4Q9Y264 503 aa10.05□□□□□ -0.8
SQSTM1-203ENST00000422245 A0A0B4J2E0 115 aa10.04□□□□□ -0.8
SQSTM1-203ENST00000422245 A0A1B0GX12 115 aa10.04□□□□□ -0.8
SQSTM1-203ENST00000422245 EVPLLA8MZ36 301 aa10.04□□□□□ -0.8
SQSTM1-203ENST00000422245 SERPINB7O75635 380 aa10.04□□□□□ -0.8
SQSTM1-203ENST00000422245 OR4A8P0C604 315 aa10.04□□□□□ -0.8
SQSTM1-203ENST00000422245 FAM157CP0CG43 387 aa10.04□□□□□ -0.8
SQSTM1-203ENST00000422245 IGHV4-31P0DP07 118 aa10.04□□□□□ -0.8
SQSTM1-203ENST00000422245 NQO1P15559 274 aaKnown RBP10.04□□□□□ -0.8
SQSTM1-203ENST00000422245 CBR1P16152 277 aa10.04□□□□□ -0.8
SQSTM1-203ENST00000422245 ZNF16P17020 682 aaPredicted RBP10.04□□□□□ -0.8
SQSTM1-203ENST00000422245 SLC6A2P23975 617 aa10.04□□□□□ -0.8
SQSTM1-203ENST00000422245 ARR3P36575 388 aa10.04□□□□□ -0.8
SQSTM1-203ENST00000422245 GZMKP49863 264 aa10.04□□□□□ -0.8
SQSTM1-203ENST00000422245 PPOXP50336 477 aa10.04□□□□□ -0.8
SQSTM1-203ENST00000422245 AQP5P55064 265 aa10.04□□□□□ -0.8
SQSTM1-203ENST00000422245 TUBA1BP68363 451 aa10.04□□□□□ -0.8
SQSTM1-203ENST00000422245 TUBA4AP68366 448 aa10.04□□□□□ -0.8
SQSTM1-203ENST00000422245 ARF1P84077 181 aaKnown RBP10.04□□□□□ -0.8
SQSTM1-203ENST00000422245 IL1RL1Q01638 556 aa10.04□□□□□ -0.8
SQSTM1-203ENST00000422245 SQLEQ14534 574 aa10.04□□□□□ -0.8
SQSTM1-203ENST00000422245 PAGE3Q5JUK9 113 aa10.04□□□□□ -0.8
SQSTM1-203ENST00000422245 CYB5R2Q6BCY4 276 aa10.04□□□□□ -0.8
SQSTM1-203ENST00000422245 TUBA1AQ71U36 451 aa10.04□□□□□ -0.8
SQSTM1-203ENST00000422245 COMTD1Q86VU5 262 aa10.04□□□□□ -0.8
SQSTM1-203ENST00000422245 RANBP3LQ86VV4 465 aaPredicted RBP10.04□□□□□ -0.8
SQSTM1-203ENST00000422245 UEVLDQ8IX04 471 aa10.04□□□□□ -0.8
SQSTM1-203ENST00000422245 TMEM123Q8N131 208 aa10.04□□□□□ -0.8
SQSTM1-203ENST00000422245 C10orf111Q8N326 155 aa10.04□□□□□ -0.8
SQSTM1-203ENST00000422245 HIPK4Q8NE63 616 aa10.04□□□□□ -0.8
SQSTM1-203ENST00000422245 TAAR8Q969N4 342 aa10.04□□□□□ -0.8
SQSTM1-203ENST00000422245 SLC41A3Q96GZ6 507 aa10.04□□□□□ -0.8
SQSTM1-203ENST00000422245 ASPNQ9BXN1 380 aa10.04□□□□□ -0.8
SQSTM1-203ENST00000422245 PLK3Q9H4B4 646 aa10.04□□□□□ -0.8
SQSTM1-203ENST00000422245 RABEP2Q9H5N1 569 aa10.04□□□□□ -0.8
SQSTM1-203ENST00000422245 TMEM27Q9HBJ8 222 aa10.04□□□□□ -0.8
SQSTM1-203ENST00000422245 CRLF2Q9HC73 371 aa10.04□□□□□ -0.8
SQSTM1-203ENST00000422245 GPR35Q9HC97 309 aa10.04□□□□□ -0.8
SQSTM1-203ENST00000422245 SLCO1B3Q9NPD5 702 aa10.04□□□□□ -0.8
SQSTM1-203ENST00000422245 SLC52A3Q9NQ40 469 aa10.04□□□□□ -0.8
SQSTM1-203ENST00000422245 SLAMF8Q9P0V8 285 aa10.04□□□□□ -0.8
SQSTM1-203ENST00000422245 USP22Q9UPT9 525 aa10.04□□□□□ -0.8
SQSTM1-203ENST00000422245 FBN1P35555 2871 aaKnown RBP10.03□□□□□ -0.8
SQSTM1-203ENST00000422245 A0A087WUJ7 227 aa10.03□□□□□ -0.8
SQSTM1-203ENST00000422245 LOC390937A0A1W2PQ73 354 aa10.03□□□□□ -0.8
SQSTM1-203ENST00000422245 RNF212BA8MTL3 300 aa10.03□□□□□ -0.8
SQSTM1-203ENST00000422245 ZNF99A8MXY4 864 aaPredicted RBP10.03□□□□□ -0.8
SQSTM1-203ENST00000422245 VWC2LB2RUY7 222 aa10.03□□□□□ -0.8
SQSTM1-203ENST00000422245 TPST1O60507 370 aa10.03□□□□□ -0.8
SQSTM1-203ENST00000422245 LY6HO94772 140 aa10.03□□□□□ -0.8
SQSTM1-203ENST00000422245 ERCC1P07992 297 aaPredicted RBP10.03□□□□□ -0.8
SQSTM1-203ENST00000422245 GPX2P18283 190 aa10.03□□□□□ -0.8
SQSTM1-203ENST00000422245 AQP1P29972 269 aa10.03□□□□□ -0.8
SQSTM1-203ENST00000422245 CALCRP30988 508 aa10.03□□□□□ -0.8
SQSTM1-203ENST00000422245 NR4A2P43354 598 aa10.03□□□□□ -0.8
SQSTM1-203ENST00000422245 IDH3GP51553 393 aaPredicted RBP10.03□□□□□ -0.8
SQSTM1-203ENST00000422245 LSM11P83369 360 aaKnown RBP eCLIP10.03□□□□□ -0.82e-6■■□□□ 13.3
SQSTM1-203ENST00000422245 CEACAM16Q2WEN9 425 aa10.03□□□□□ -0.8
SQSTM1-203ENST00000422245 AGKQ53H12 422 aa10.03□□□□□ -0.8
SQSTM1-203ENST00000422245 ARMC8Q8IUR7 673 aa10.03□□□□□ -0.8
SQSTM1-203ENST00000422245 RNF217Q8TC41 542 aa10.03□□□□□ -0.8
SQSTM1-203ENST00000422245 DYDC1Q8WWB3 177 aa10.03□□□□□ -0.8
SQSTM1-203ENST00000422245 STON2Q8WXE9 905 aa10.03□□□□□ -0.8
SQSTM1-203ENST00000422245 ATP6V1G3Q96LB4 118 aa10.03□□□□□ -0.8
SQSTM1-203ENST00000422245 ANKRD27Q96NW4 1050 aa10.03□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 50.7 ms