RNA–Protein interactions for RNA: ENST00000409809.5

COL6A3-206, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 8,916 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-206ENST00000409809 SPRED3Q2MJR0 410 aa12.01□□□□□ -0.49
COL6A3-206ENST00000409809 CCNL2Q96S94 520 aaPredicted RBP12.01□□□□□ -0.49
COL6A3-206ENST00000409809 SMDT1Q9H4I9 107 aa12.01□□□□□ -0.49
COL6A3-206ENST00000409809 PRTFDC1Q9NRG1 225 aa12.01□□□□□ -0.49
COL6A3-206ENST00000409809 C7orf72A4D263 438 aa12.01□□□□□ -0.49
COL6A3-206ENST00000409809 SIM1P81133 766 aaPredicted RBP12.01□□□□□ -0.49
COL6A3-206ENST00000409809 C19orf57Q0VDD7 668 aa12.01□□□□□ -0.49
COL6A3-206ENST00000409809 B3GNTL1Q67FW5 361 aaPredicted RBP12.01□□□□□ -0.49
COL6A3-206ENST00000409809 FJX1Q86VR8 437 aa12.01□□□□□ -0.49
COL6A3-206ENST00000409809 CCDC116Q8IYX3 515 aa12.01□□□□□ -0.49
COL6A3-206ENST00000409809 GLIS1Q8NBF1 620 aa12.01□□□□□ -0.49
COL6A3-206ENST00000409809 SAT2Q96F10 170 aaPredicted RBP12.01□□□□□ -0.49
COL6A3-206ENST00000409809 TMEM38AQ9H6F2 299 aa12.01□□□□□ -0.49
COL6A3-206ENST00000409809 USP36Q9P275 1121 aaKnown RBP12.01□□□□□ -0.49
COL6A3-206ENST00000409809 DCDC2BA2VCK2 349 aa12.01□□□□□ -0.49
COL6A3-206ENST00000409809 KIAA1324LA8MWY0 1029 aaPredicted RBP12.01□□□□□ -0.49
COL6A3-206ENST00000409809 CD37P11049 281 aa12.01□□□□□ -0.49
COL6A3-206ENST00000409809 LAMP1P11279 417 aa12.01□□□□□ -0.49
COL6A3-206ENST00000409809 DGKEP52429 567 aa12.01□□□□□ -0.49
COL6A3-206ENST00000409809 SUB1P53999 127 aaKnown RBP eCLIP12.01□□□□□ -0.49
COL6A3-206ENST00000409809 SLC35A2P78381 396 aa12.01□□□□□ -0.49
COL6A3-206ENST00000409809 C1QTNF12Q5T7M4 302 aa12.01□□□□□ -0.49
COL6A3-206ENST00000409809 TMEM164Q5U3C3 297 aa12.01□□□□□ -0.49
COL6A3-206ENST00000409809 OR4N5Q8IXE1 308 aa12.01□□□□□ -0.49
COL6A3-206ENST00000409809 BCL7CQ8WUZ0 217 aaPredicted RBP12.01□□□□□ -0.49
COL6A3-206ENST00000409809 WDR77Q9BQA1 342 aaPredicted RBP12.01□□□□□ -0.49
COL6A3-206ENST00000409809 PPP1R14DQ9NXH3 145 aa12.01□□□□□ -0.49
COL6A3-206ENST00000409809 DIDO1Q9BTC0 2240 aaKnown RBP12.01□□□□□ -0.49
COL6A3-206ENST00000409809 PHLPP1O60346 1717 aa12.01□□□□□ -0.49
COL6A3-206ENST00000409809 KIAA1217Q5T5P2 1943 aa12.01□□□□□ -0.49
COL6A3-206ENST00000409809 A0A1B0GV72 72 aa12.01□□□□□ -0.49
COL6A3-206ENST00000409809 CHEK1O14757 476 aa12.01□□□□□ -0.49
COL6A3-206ENST00000409809 CLDN7O95471 211 aa12.01□□□□□ -0.49
COL6A3-206ENST00000409809 HOXD11P31277 338 aaPredicted RBP12.01□□□□□ -0.49
COL6A3-206ENST00000409809 CD80P33681 288 aa12.01□□□□□ -0.49
COL6A3-206ENST00000409809 ZNF90Q03938 601 aa12.01□□□□□ -0.49
COL6A3-206ENST00000409809 CTU2Q2VPK5 515 aaKnown RBP12.01□□□□□ -0.49
COL6A3-206ENST00000409809 VASNQ6EMK4 673 aa12.01□□□□□ -0.49
COL6A3-206ENST00000409809 ZFPM2Q8WW38 1151 aa12.01□□□□□ -0.49
COL6A3-206ENST00000409809 AMDHD1Q96NU7 426 aa12.01□□□□□ -0.49
COL6A3-206ENST00000409809 GABARAPL3Q9BY60 117 aa12.01□□□□□ -0.49
COL6A3-206ENST00000409809 ZNF160Q9HCG1 818 aa12.01□□□□□ -0.49
COL6A3-206ENST00000409809 MPPED1O15442 326 aa12.01□□□□□ -0.49
COL6A3-206ENST00000409809 ADAM11O75078 769 aa12.01□□□□□ -0.49
COL6A3-206ENST00000409809 SIX1Q15475 284 aaPredicted RBP12.01□□□□□ -0.49
COL6A3-206ENST00000409809 BEX5Q5H9J7 111 aa12.01□□□□□ -0.49
COL6A3-206ENST00000409809 C22orf39Q6P5X5 142 aa12.01□□□□□ -0.49
COL6A3-206ENST00000409809 SLC39A11Q8N1S5 342 aa12.01□□□□□ -0.49
COL6A3-206ENST00000409809 NARFLQ9H6Q4 476 aa12.01□□□□□ -0.49
COL6A3-206ENST00000409809 HEATR5BQ9P2D3 2071 aa12.01□□□□□ -0.49
COL6A3-206ENST00000409809 PQBP1O60828 265 aaKnown RBP12.01□□□□□ -0.49
COL6A3-206ENST00000409809 NSUN5Q96P11 429 aaKnown RBP12.01□□□□□ -0.49
COL6A3-206ENST00000409809 ACTR3CQ9C0K3 210 aaPredicted RBP12.01□□□□□ -0.49
COL6A3-206ENST00000409809 IL20RAQ9UHF4 553 aa12.01□□□□□ -0.49
COL6A3-206ENST00000409809 OR52A1Q9UKL2 312 aa12.01□□□□□ -0.49
COL6A3-206ENST00000409809 PTHP01270 115 aa12□□□□□ -0.49
COL6A3-206ENST00000409809 GPR18Q14330 331 aa12□□□□□ -0.49
COL6A3-206ENST00000409809 PINX1Q96BK5 328 aaKnown RBP12□□□□□ -0.49
COL6A3-206ENST00000409809 SMIM7Q9BQ49 75 aa12□□□□□ -0.49
COL6A3-206ENST00000409809 NXF2Q9GZY0 626 aaKnown RBP12□□□□□ -0.49
COL6A3-206ENST00000409809 OR52D1Q9H346 318 aa12□□□□□ -0.49
COL6A3-206ENST00000409809 SLC7A7Q9UM01 511 aa12□□□□□ -0.49
COL6A3-206ENST00000409809 FLVCR2Q9UPI3 526 aa12□□□□□ -0.49
COL6A3-206ENST00000409809 CSAG2Q9Y5P2 127 aa12□□□□□ -0.49
COL6A3-206ENST00000409809 MYBPHLA2RUH7 354 aa12□□□□□ -0.49
COL6A3-206ENST00000409809 SLC22A20A6NK97 555 aa12□□□□□ -0.49
COL6A3-206ENST00000409809 TSPAN6O43657 245 aa12□□□□□ -0.49
COL6A3-206ENST00000409809 ADH4P08319 380 aa12□□□□□ -0.49
COL6A3-206ENST00000409809 PREPP48147 710 aa12□□□□□ -0.49
COL6A3-206ENST00000409809 OR52B6Q8NGF0 335 aa12□□□□□ -0.49
COL6A3-206ENST00000409809 ABHD5Q8WTS1 349 aa12□□□□□ -0.49
COL6A3-206ENST00000409809 SENP5Q96HI0 755 aaPredicted RBP12□□□□□ -0.49
COL6A3-206ENST00000409809 WFIKKN1Q96NZ8 548 aa12□□□□□ -0.49
COL6A3-206ENST00000409809 MTHFD2P13995 350 aa12□□□□□ -0.49
COL6A3-206ENST00000409809 HNRNPA2B1P22626 353 aaKnown RBP12□□□□□ -0.49
COL6A3-206ENST00000409809 DLX2Q07687 328 aaPredicted RBP12□□□□□ -0.49
COL6A3-206ENST00000409809 DOC2AQ14183 400 aa12□□□□□ -0.49
COL6A3-206ENST00000409809 FAM110CQ1W6H9 321 aa12□□□□□ -0.49
COL6A3-206ENST00000409809 SLC35B3Q9H1N7 401 aa12□□□□□ -0.49
COL6A3-206ENST00000409809 ZFP92A6NM28 416 aa12□□□□□ -0.49
COL6A3-206ENST00000409809 SFTA3P0C7M3 94 aa12□□□□□ -0.49
COL6A3-206ENST00000409809 TNFSF4P23510 183 aa12□□□□□ -0.49
COL6A3-206ENST00000409809 BAXQ07812 192 aa12□□□□□ -0.49
COL6A3-206ENST00000409809 GPR17Q13304 367 aa12□□□□□ -0.49
COL6A3-206ENST00000409809 NCR3LG1Q68D85 454 aa12□□□□□ -0.49
COL6A3-206ENST00000409809 CATSPERDQ86XM0 798 aa12□□□□□ -0.49
COL6A3-206ENST00000409809 OR4F15Q8NGB8 312 aa12□□□□□ -0.49
COL6A3-206ENST00000409809 C12orf42Q96LP6 360 aa12□□□□□ -0.49
COL6A3-206ENST00000409809 DDX31Q9H8H2 851 aaKnown RBP12□□□□□ -0.49
COL6A3-206ENST00000409809 AKAP11Q9UKA4 1901 aa12□□□□□ -0.49
COL6A3-206ENST00000409809 MEIS3P2A8K0S8 358 aa12□□□□□ -0.49
COL6A3-206ENST00000409809 BIDP55957 195 aa12□□□□□ -0.49
COL6A3-206ENST00000409809 PLGLAQ15195 96 aa12□□□□□ -0.49
COL6A3-206ENST00000409809 GGNBP1Q5YKI7 109 aa12□□□□□ -0.49
COL6A3-206ENST00000409809 ABHD4Q8TB40 342 aa12□□□□□ -0.49
COL6A3-206ENST00000409809 METTL9Q9H1A3 318 aa12□□□□□ -0.49
COL6A3-206ENST00000409809 SIRT7Q9NRC8 400 aa12□□□□□ -0.49
COL6A3-206ENST00000409809 POMT2Q9UKY4 750 aa12□□□□□ -0.49
COL6A3-206ENST00000409809 ELOBQ15370 118 aa12□□□□□ -0.49
COL6A3-206ENST00000409809 SLC9A3R2Q15599 337 aa12□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms