RNA–Protein interactions for RNA: ENST00000409458.3

GPNMB-203, Transcript of glycoprotein nmb, humanhuman

TSL 1 (best) BASIC

Gene GPNMB, Length 1,673 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPNMB-203ENST00000409458 M0R3G1 203 aa12.64□□□□□ -0.39
GPNMB-203ENST00000409458 MYL12BO14950 172 aa12.64□□□□□ -0.39
GPNMB-203ENST00000409458 OR6A2O95222 327 aa12.64□□□□□ -0.39
GPNMB-203ENST00000409458 IGHA1P01876 353 aa12.64□□□□□ -0.39
GPNMB-203ENST00000409458 MYL12AP19105 171 aa12.64□□□□□ -0.39
GPNMB-203ENST00000409458 SRD5A2P31213 254 aa12.64□□□□□ -0.39
GPNMB-203ENST00000409458 LIPAP38571 399 aa12.64□□□□□ -0.39
GPNMB-203ENST00000409458 MFSD13AQ14CX5 517 aa12.64□□□□□ -0.39
GPNMB-203ENST00000409458 MED22Q15528 200 aa12.64□□□□□ -0.39
GPNMB-203ENST00000409458 EMC4Q5J8M3 183 aa12.64□□□□□ -0.39
GPNMB-203ENST00000409458 ARMC4Q5T2S8 1044 aa12.64□□□□□ -0.39
GPNMB-203ENST00000409458 SLC16A12Q6ZSM3 486 aa12.64□□□□□ -0.39
GPNMB-203ENST00000409458 NANOGP1Q8N7R0 232 aa12.64□□□□□ -0.39
GPNMB-203ENST00000409458 SLC25A43Q8WUT9 341 aaPredicted RBP12.64□□□□□ -0.39
GPNMB-203ENST00000409458 ZNRF4Q8WWF5 429 aa12.64□□□□□ -0.39
GPNMB-203ENST00000409458 C12orf43Q96C57 262 aaKnown RBP12.64□□□□□ -0.39
GPNMB-203ENST00000409458 TEAD3Q99594 435 aa12.64□□□□□ -0.39
GPNMB-203ENST00000409458 DOK1Q99704 481 aa12.64□□□□□ -0.39
GPNMB-203ENST00000409458 MND1Q9BWT6 205 aa12.64□□□□□ -0.39
GPNMB-203ENST00000409458 NMNAT2Q9BZQ4 307 aa12.64□□□□□ -0.39
GPNMB-203ENST00000409458 CHST11Q9NPF2 352 aa12.64□□□□□ -0.39
GPNMB-203ENST00000409458 ASPMQ8IZT6 3477 aa12.64□□□□□ -0.39
GPNMB-203ENST00000409458 CELSR3Q9NYQ7 3312 aa12.64□□□□□ -0.39
GPNMB-203ENST00000409458 MS4A18H0YCH9 400 aa12.64□□□□□ -0.39
GPNMB-203ENST00000409458 H3BMQ9 156 aa12.64□□□□□ -0.39
GPNMB-203ENST00000409458 H7C1C5 153 aa12.64□□□□□ -0.39
GPNMB-203ENST00000409458 ZNF701M0R085 212 aaPredicted RBP12.64□□□□□ -0.39
GPNMB-203ENST00000409458 DLL1O00548 723 aa12.64□□□□□ -0.39
GPNMB-203ENST00000409458 TRMUO75648 421 aaKnown RBP12.64□□□□□ -0.39
GPNMB-203ENST00000409458 AKR7A3O95154 331 aa12.64□□□□□ -0.39
GPNMB-203ENST00000409458 IGHMP01871 453 aa12.64□□□□□ -0.39
GPNMB-203ENST00000409458 MRPL3P09001 348 aaKnown RBP12.64□□□□□ -0.39
GPNMB-203ENST00000409458 HLA-DOBP13765 273 aa12.64□□□□□ -0.39
GPNMB-203ENST00000409458 SOX8P57073 446 aa12.64□□□□□ -0.39
GPNMB-203ENST00000409458 LCN6P62502 163 aa12.64□□□□□ -0.39
GPNMB-203ENST00000409458 PUDPQ08623 228 aa12.64□□□□□ -0.39
GPNMB-203ENST00000409458 FOXO1Q12778 655 aa12.64□□□□□ -0.39
GPNMB-203ENST00000409458 CDC20Q12834 499 aa12.64□□□□□ -0.39
GPNMB-203ENST00000409458 FOXC1Q12948 553 aa12.64□□□□□ -0.39
GPNMB-203ENST00000409458 TMED1Q13445 227 aa12.64□□□□□ -0.39
GPNMB-203ENST00000409458 TOMM20Q15388 145 aa12.64□□□□□ -0.39
GPNMB-203ENST00000409458 ACKR1Q16570 336 aa12.64□□□□□ -0.39
GPNMB-203ENST00000409458 MS4A18Q3C1V0 323 aa12.64□□□□□ -0.39
GPNMB-203ENST00000409458 TMEM176BQ3YBM2 270 aaPredicted RBP12.64□□□□□ -0.39
GPNMB-203ENST00000409458 AGAP7PQ5VUJ5 663 aa12.64□□□□□ -0.39
GPNMB-203ENST00000409458 GPR139Q6DWJ6 353 aa12.64□□□□□ -0.39
GPNMB-203ENST00000409458 H1FNTQ75WM6 255 aaPredicted RBP12.64□□□□□ -0.39
GPNMB-203ENST00000409458 KDM8Q8N371 416 aa12.64□□□□□ -0.39
GPNMB-203ENST00000409458 TMEM99Q8N816 258 aa12.64□□□□□ -0.39
GPNMB-203ENST00000409458 OR2M7Q8NG81 312 aa12.64□□□□□ -0.39
GPNMB-203ENST00000409458 OR51L1Q8NGJ5 315 aa12.64□□□□□ -0.39
GPNMB-203ENST00000409458 ZNF519Q8TB69 540 aa12.64□□□□□ -0.39
GPNMB-203ENST00000409458 COG8Q96MW5 612 aa12.64□□□□□ -0.39
GPNMB-203ENST00000409458 AGAP4Q96P64 663 aa12.64□□□□□ -0.39
GPNMB-203ENST00000409458 ADGRL4Q9HBW9 690 aa12.64□□□□□ -0.39
GPNMB-203ENST00000409458 ASB6Q9NWX5 421 aa12.64□□□□□ -0.39
GPNMB-203ENST00000409458 TNFRSF10DQ9UBN6 386 aa12.64□□□□□ -0.39
GPNMB-203ENST00000409458 ENPP5Q9UJA9 477 aa12.64□□□□□ -0.39
GPNMB-203ENST00000409458 EXOSC1Q9Y3B2 195 aaKnown RBP12.64□□□□□ -0.39
GPNMB-203ENST00000409458 LIMS3P0CW19 117 aa12.63□□□□□ -0.39
GPNMB-203ENST00000409458 LIMS4P0CW20 117 aa12.63□□□□□ -0.39
GPNMB-203ENST00000409458 HSMCR30P0CW71 290 aa12.63□□□□□ -0.39
GPNMB-203ENST00000409458 SPI1P17947 270 aa12.63□□□□□ -0.39
GPNMB-203ENST00000409458 NR4A1P22736 598 aa12.63□□□□□ -0.39
GPNMB-203ENST00000409458 ATP6V1E1P36543 226 aa12.63□□□□□ -0.39
GPNMB-203ENST00000409458 CD79BP40259 229 aa12.63□□□□□ -0.39
GPNMB-203ENST00000409458 TMBIM6P55061 237 aa12.63□□□□□ -0.39
GPNMB-203ENST00000409458 B3GALT5-AS1P59052 145 aa12.63□□□□□ -0.39
GPNMB-203ENST00000409458 RPL27P61353 136 aaKnown RBP12.63□□□□□ -0.39
GPNMB-203ENST00000409458 TLE3Q04726 772 aa12.63□□□□□ -0.39
GPNMB-203ENST00000409458 ZP4Q12836 540 aa12.63□□□□□ -0.39
GPNMB-203ENST00000409458 MELKQ14680 651 aa12.63□□□□□ -0.39
GPNMB-203ENST00000409458 ARMCX4Q5H9R4 360 aa12.63□□□□□ -0.39
GPNMB-203ENST00000409458 YRDCQ86U90 279 aaKnown RBP12.63□□□□□ -0.39
GPNMB-203ENST00000409458 ANKRD13BQ86YJ7 626 aa12.63□□□□□ -0.39
GPNMB-203ENST00000409458 EXD3Q8N9H8 876 aa12.63□□□□□ -0.39
GPNMB-203ENST00000409458 MDS2Q8NDY4 140 aa12.63□□□□□ -0.39
GPNMB-203ENST00000409458 PROKR2Q8NFJ6 384 aa12.63□□□□□ -0.39
GPNMB-203ENST00000409458 ZMYND19Q96E35 227 aaPredicted RBP12.63□□□□□ -0.39
GPNMB-203ENST00000409458 C5orf34Q96MH7 638 aa12.63□□□□□ -0.39
GPNMB-203ENST00000409458 FAM173AQ9BQD7 235 aa12.63□□□□□ -0.39
GPNMB-203ENST00000409458 PIGQQ9BRB3 760 aa12.63□□□□□ -0.39
GPNMB-203ENST00000409458 ZNF649Q9BS31 505 aa12.63□□□□□ -0.39
GPNMB-203ENST00000409458 JAM3Q9BX67 310 aa12.63□□□□□ -0.39
GPNMB-203ENST00000409458 TXNIPQ9H3M7 391 aa12.63□□□□□ -0.39
GPNMB-203ENST00000409458 ZFP64Q9NPA5 681 aa12.63□□□□□ -0.39
GPNMB-203ENST00000409458 RPRD1BQ9NQG5 326 aaKnown RBP12.63□□□□□ -0.39
GPNMB-203ENST00000409458 BOKQ9UMX3 212 aaPredicted RBP12.63□□□□□ -0.39
GPNMB-203ENST00000409458 HDGFL3Q9Y3E1 203 aa12.63□□□□□ -0.39
GPNMB-203ENST00000409458 A0A1W2PNV4 684 aa12.62□□□□□ -0.39
GPNMB-203ENST00000409458 TMEM129A0AVI4 362 aa12.62□□□□□ -0.39
GPNMB-203ENST00000409458 OR5H15A6NDH6 313 aa12.62□□□□□ -0.39
GPNMB-203ENST00000409458 ZNF891A8MT65 544 aaPredicted RBP12.62□□□□□ -0.39
GPNMB-203ENST00000409458 NOL3O60936 208 aaKnown RBP12.62□□□□□ -0.39
GPNMB-203ENST00000409458 CD36P16671 472 aa12.62□□□□□ -0.39
GPNMB-203ENST00000409458 SPINK2P20155 84 aa12.62□□□□□ -0.39
GPNMB-203ENST00000409458 FKBP2P26885 142 aaKnown RBP12.62□□□□□ -0.39
GPNMB-203ENST00000409458 ACVR1BP36896 505 aa12.62□□□□□ -0.39
GPNMB-203ENST00000409458 CLK1P49759 484 aaKnown RBP12.62□□□□□ -0.39
GPNMB-203ENST00000409458 P2RY4P51582 365 aa12.62□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 46.6 ms