RNA–Protein interactions for RNA: ENST00000409251.7

PTPRN-202, Transcript of protein tyrosine phosphatase, receptor type N, humanhuman

TSL 1 (best) BASIC

Gene PTPRN, Length 3,622 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRN-202ENST00000409251 SLC6A5Q9Y345 797 aa11.91□□□□□ -0.5
PTPRN-202ENST00000409251 FAM96BQ9Y3D0 163 aa11.91□□□□□ -0.5
PTPRN-202ENST00000409251 LY86O95711 162 aa11.9□□□□□ -0.5
PTPRN-202ENST00000409251 CDK2P24941 298 aa11.9□□□□□ -0.5
PTPRN-202ENST00000409251 KHKP50053 298 aa11.9□□□□□ -0.5
PTPRN-202ENST00000409251 SKP1P63208 163 aa11.9□□□□□ -0.5
PTPRN-202ENST00000409251 TMEM52BQ4KMG9 183 aa11.9□□□□□ -0.5
PTPRN-202ENST00000409251 FAM69AQ5T7M9 428 aa11.9□□□□□ -0.5
PTPRN-202ENST00000409251 AADACL4Q5VUY2 407 aa11.9□□□□□ -0.5
PTPRN-202ENST00000409251 THSD4Q6ZMP0 1018 aa11.9□□□□□ -0.5
PTPRN-202ENST00000409251 NUDT13Q86X67 352 aa11.9□□□□□ -0.5
PTPRN-202ENST00000409251 TDHQ8IZJ6 230 aa11.9□□□□□ -0.5
PTPRN-202ENST00000409251 BRIX1Q8TDN6 353 aaKnown RBP11.9□□□□□ -0.5
PTPRN-202ENST00000409251 AIF1LQ9BQI0 150 aa11.9□□□□□ -0.5
PTPRN-202ENST00000409251 JAM3Q9BX67 310 aa11.9□□□□□ -0.5
PTPRN-202ENST00000409251 TRPV4Q9HBA0 871 aa11.9□□□□□ -0.5
PTPRN-202ENST00000409251 OR6C68A6NDL8 312 aa11.9□□□□□ -0.5
PTPRN-202ENST00000409251 SULT1C2O00338 296 aa11.9□□□□□ -0.5
PTPRN-202ENST00000409251 SLC16A5O15375 505 aa11.9□□□□□ -0.5
PTPRN-202ENST00000409251 CDC123O75794 336 aaPredicted RBP11.9□□□□□ -0.5
PTPRN-202ENST00000409251 ARL6IP5O75915 188 aa11.9□□□□□ -0.5
PTPRN-202ENST00000409251 MEOX2P50222 304 aa11.9□□□□□ -0.5
PTPRN-202ENST00000409251 DLX5P56178 289 aa11.9□□□□□ -0.5
PTPRN-202ENST00000409251 PDZK1IP1Q13113 114 aa11.9□□□□□ -0.5
PTPRN-202ENST00000409251 HFEQ30201 348 aa11.9□□□□□ -0.5
PTPRN-202ENST00000409251 LRRK1Q38SD2 2015 aa11.9□□□□□ -0.5
PTPRN-202ENST00000409251 MANEAQ5SRI9 462 aa11.9□□□□□ -0.5
PTPRN-202ENST00000409251 PRAMEF17Q5VTA0 474 aa11.9□□□□□ -0.5
PTPRN-202ENST00000409251 MEPCEQ7L2J0 689 aaKnown RBP11.9□□□□□ -0.5
PTPRN-202ENST00000409251 MUC20Q8N307 709 aaPredicted RBP11.9□□□□□ -0.5
PTPRN-202ENST00000409251 SLC16A11Q8NCK7 471 aa11.9□□□□□ -0.5
PTPRN-202ENST00000409251 OR1S2Q8NGQ3 325 aa11.9□□□□□ -0.5
PTPRN-202ENST00000409251 HGDQ93099 445 aa11.9□□□□□ -0.5
PTPRN-202ENST00000409251 ELSPBP1Q96BH3 223 aa11.9□□□□□ -0.5
PTPRN-202ENST00000409251 CXorf40BQ96DE9 158 aa11.9□□□□□ -0.5
PTPRN-202ENST00000409251 CAMK1GQ96NX5 476 aa11.9□□□□□ -0.5
PTPRN-202ENST00000409251 TEAD3Q99594 435 aa11.9□□□□□ -0.5
PTPRN-202ENST00000409251 HDAC8Q9BY41 377 aa11.9□□□□□ -0.5
PTPRN-202ENST00000409251 S1PR5Q9H228 398 aa11.9□□□□□ -0.5
PTPRN-202ENST00000409251 ESRP2Q9H6T0 727 aaKnown RBP11.9□□□□□ -0.5
PTPRN-202ENST00000409251 ASB6Q9NWX5 421 aa11.9□□□□□ -0.5
PTPRN-202ENST00000409251 WDR45Q9Y484 360 aa11.9□□□□□ -0.5
PTPRN-202ENST00000409251 C5orf51A6NDU8 294 aa11.9□□□□□ -0.51
PTPRN-202ENST00000409251 VEGFDO43915 354 aa11.9□□□□□ -0.51
PTPRN-202ENST00000409251 RBBP9O75884 186 aa11.9□□□□□ -0.51
PTPRN-202ENST00000409251 APOC1P02654 83 aa11.9□□□□□ -0.51
PTPRN-202ENST00000409251 CCR4P51679 360 aa11.9□□□□□ -0.51
PTPRN-202ENST00000409251 CBFBQ13951 182 aa11.9□□□□□ -0.51
PTPRN-202ENST00000409251 EXOSC6Q5RKV6 272 aaKnown RBP11.9□□□□□ -0.51
PTPRN-202ENST00000409251 METRNLQ641Q3 311 aa11.9□□□□□ -0.51
PTPRN-202ENST00000409251 TFAP2EQ6VUC0 442 aa11.9□□□□□ -0.51
PTPRN-202ENST00000409251 RHOUQ7L0Q8 258 aa11.9□□□□□ -0.51
PTPRN-202ENST00000409251 CD163Q86VB7 1156 aa11.9□□□□□ -0.51
PTPRN-202ENST00000409251 TMEM17Q86X19 198 aa11.9□□□□□ -0.51
PTPRN-202ENST00000409251 ZNF514Q96K75 400 aaPredicted RBP11.9□□□□□ -0.51
PTPRN-202ENST00000409251 HSPA12BQ96MM6 686 aa11.9□□□□□ -0.51
PTPRN-202ENST00000409251 UGDHO60701 494 aa11.89□□□□□ -0.51
PTPRN-202ENST00000409251 SC5DO75845 299 aa11.89□□□□□ -0.51
PTPRN-202ENST00000409251 THBS2P35442 1172 aa11.89□□□□□ -0.51
PTPRN-202ENST00000409251 PDX1P52945 283 aa11.89□□□□□ -0.51
PTPRN-202ENST00000409251 GAS1P54826 345 aa11.89□□□□□ -0.51
PTPRN-202ENST00000409251 CCDC157Q569K6 752 aa11.89□□□□□ -0.51
PTPRN-202ENST00000409251 GDF7Q7Z4P5 450 aa11.89□□□□□ -0.51
PTPRN-202ENST00000409251 PUSL1Q8N0Z8 303 aaKnown RBP11.89□□□□□ -0.51
PTPRN-202ENST00000409251 NUP43Q8NFH3 380 aa11.89□□□□□ -0.51
PTPRN-202ENST00000409251 PTTG3PQ9NZH4 202 aa11.89□□□□□ -0.51
PTPRN-202ENST00000409251 GLS2Q9UI32 602 aa11.89□□□□□ -0.51
PTPRN-202ENST00000409251 CENPVL1A0A0U1RR11 272 aa11.89□□□□□ -0.51
PTPRN-202ENST00000409251 ADH1BP00325 375 aa11.89□□□□□ -0.51
PTPRN-202ENST00000409251 ITGA3P26006 1051 aa11.89□□□□□ -0.51
PTPRN-202ENST00000409251 PPP1CAP62136 330 aa11.89□□□□□ -0.51
PTPRN-202ENST00000409251 C9orf152Q5JTZ5 239 aa11.89□□□□□ -0.51
PTPRN-202ENST00000409251 ZNF660Q6AZW8 331 aaPredicted RBP11.89□□□□□ -0.51
PTPRN-202ENST00000409251 CD200R1LQ6Q8B3 271 aa11.89□□□□□ -0.51
PTPRN-202ENST00000409251 OR52N1Q8NH53 320 aa11.89□□□□□ -0.51
PTPRN-202ENST00000409251 OR5K2Q8NHB8 316 aa11.89□□□□□ -0.51
PTPRN-202ENST00000409251 CDS1Q92903 461 aa11.89□□□□□ -0.51
PTPRN-202ENST00000409251 ZC3H10Q96K80 434 aaKnown RBP11.89□□□□□ -0.51
PTPRN-202ENST00000409251 RSRP1Q9BUV0 290 aa11.89□□□□□ -0.51
PTPRN-202ENST00000409251 FOXQ1Q9C009 403 aa11.89□□□□□ -0.51
PTPRN-202ENST00000409251 SPTBN2O15020 2390 aa11.89□□□□□ -0.51
PTPRN-202ENST00000409251 PLXNB3Q9ULL4 1909 aa11.89□□□□□ -0.51
PTPRN-202ENST00000409251 PLSCR5A0PG75 271 aa11.88□□□□□ -0.51
PTPRN-202ENST00000409251 UNC119BA6NIH7 251 aa11.88□□□□□ -0.51
PTPRN-202ENST00000409251 G3V3Q6 166 aa11.88□□□□□ -0.51
PTPRN-202ENST00000409251 FABP1P07148 127 aa11.88□□□□□ -0.51
PTPRN-202ENST00000409251 CSF2RBP32927 897 aa11.88□□□□□ -0.51
PTPRN-202ENST00000409251 RAB13P51153 203 aa11.88□□□□□ -0.51
PTPRN-202ENST00000409251 MAMSTRQ6ZN01 415 aa11.88□□□□□ -0.51
PTPRN-202ENST00000409251 ZNF620Q6ZNG0 422 aa11.88□□□□□ -0.51
PTPRN-202ENST00000409251 RTL10Q7L3V2 364 aa11.88□□□□□ -0.51
PTPRN-202ENST00000409251 CDH26Q8IXH8 852 aa11.88□□□□□ -0.51
PTPRN-202ENST00000409251 METTL27Q8N6F8 245 aaPredicted RBP11.88□□□□□ -0.51
PTPRN-202ENST00000409251 SUN3Q8TAQ9 357 aa11.88□□□□□ -0.51
PTPRN-202ENST00000409251 SMIM4Q8WVI0 70 aa11.88□□□□□ -0.51
PTPRN-202ENST00000409251 NSMAFQ92636 917 aa11.88□□□□□ -0.51
PTPRN-202ENST00000409251 BIN3Q9NQY0 253 aa11.88□□□□□ -0.51
PTPRN-202ENST00000409251 ACSS1Q9NUB1 689 aaPredicted RBP11.88□□□□□ -0.51
PTPRN-202ENST00000409251 FAM86C1Q9NVL1 165 aa11.88□□□□□ -0.51
PTPRN-202ENST00000409251 PIPOXQ9P0Z9 390 aa11.88□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms