RNA–Protein interactions for RNA: ENST00000395653.9

CLN3-207, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,430 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-207ENST00000395653 RHCEP18577 417 aa19.15■□□□□ 0.66
CLN3-207ENST00000395653 KRTAP10-9P60411 292 aa19.15■□□□□ 0.66
CLN3-207ENST00000395653 POU3F1Q03052 451 aaPredicted RBP19.15■□□□□ 0.66
CLN3-207ENST00000395653 ZP4Q12836 540 aa19.15■□□□□ 0.66
CLN3-207ENST00000395653 MTX3Q5HYI7 312 aa19.15■□□□□ 0.66
CLN3-207ENST00000395653 LRRC17Q8N6Y2 441 aa19.15■□□□□ 0.66
CLN3-207ENST00000395653 PIK3C3Q8NEB9 887 aa19.15■□□□□ 0.66
CLN3-207ENST00000395653 LIPHQ8WWY8 451 aa19.15■□□□□ 0.66
CLN3-207ENST00000395653 SGTBQ96EQ0 304 aa19.15■□□□□ 0.66
CLN3-207ENST00000395653 ZC3HAV1LQ96H79 300 aaKnown RBP19.15■□□□□ 0.66
CLN3-207ENST00000395653 CLEC4MQ9H2X3 399 aaPredicted RBP19.15■□□□□ 0.66
CLN3-207ENST00000395653 C20orf141Q9NUB4 165 aa19.15■□□□□ 0.66
CLN3-207ENST00000395653 FAM32AQ9Y421 112 aaKnown RBP19.15■□□□□ 0.66
CLN3-207ENST00000395653 HRGP04196 525 aa19.14■□□□□ 0.65
CLN3-207ENST00000395653 HIST1H2ABP04908 130 aa19.14■□□□□ 0.65
CLN3-207ENST00000395653 UMPSP11172 480 aa19.14■□□□□ 0.65
CLN3-207ENST00000395653 ITGA2P17301 1181 aa19.14■□□□□ 0.65
CLN3-207ENST00000395653 FUT4P22083 530 aa19.14■□□□□ 0.65
CLN3-207ENST00000395653 AHCYP23526 432 aa19.14■□□□□ 0.65
CLN3-207ENST00000395653 VLDLRP98155 873 aa19.14■□□□□ 0.65
CLN3-207ENST00000395653 FOXD4Q12950 439 aaPredicted RBP19.14■□□□□ 0.65
CLN3-207ENST00000395653 TRIM25Q14258 630 aaKnown RBP19.14■□□□□ 0.65
CLN3-207ENST00000395653 DNAL1Q4LDG9 190 aa19.14■□□□□ 0.65
CLN3-207ENST00000395653 HIST3H2AQ7L7L0 130 aa19.14■□□□□ 0.65
CLN3-207ENST00000395653 NANOGNBQ7Z5D8 188 aa19.14■□□□□ 0.65
CLN3-207ENST00000395653 ABHD12BQ7Z5M8 362 aaPredicted RBP19.14■□□□□ 0.65
CLN3-207ENST00000395653 ACOT11Q8WXI4 607 aaPredicted RBP19.14■□□□□ 0.65
CLN3-207ENST00000395653 HSD17B8Q92506 261 aa19.14■□□□□ 0.65
CLN3-207ENST00000395653 HIST1H2ACQ93077 130 aa19.14■□□□□ 0.65
CLN3-207ENST00000395653 POLDIP3Q9BY77 421 aaKnown RBP19.14■□□□□ 0.65
CLN3-207ENST00000395653 LINC00470Q9BZP3 86 aa19.14■□□□□ 0.65
CLN3-207ENST00000395653 NMNAT1Q9HAN9 279 aaPredicted RBP19.14■□□□□ 0.65
CLN3-207ENST00000395653 V9GYQ6 96 aa19.14■□□□□ 0.65
CLN3-207ENST00000395653 LRBAP50851 2863 aa19.13■□□□□ 0.65
CLN3-207ENST00000395653 TEX15Q9BXT5 2789 aa19.13■□□□□ 0.65
CLN3-207ENST00000395653 PDE5AO76074 875 aa19.13■□□□□ 0.65
CLN3-207ENST00000395653 OR7A10O76100 309 aa19.13■□□□□ 0.65
CLN3-207ENST00000395653 ITGA5P08648 1049 aa19.13■□□□□ 0.65
CLN3-207ENST00000395653 HLA-DOBP13765 273 aa19.13■□□□□ 0.65
CLN3-207ENST00000395653 FUT1P19526 365 aa19.13■□□□□ 0.65
CLN3-207ENST00000395653 DNAJA1P31689 397 aaKnown RBP19.13■□□□□ 0.65
CLN3-207ENST00000395653 TAB1Q15750 504 aa19.13■□□□□ 0.65
CLN3-207ENST00000395653 IQCCQ4KMZ1 466 aa19.13■□□□□ 0.65
CLN3-207ENST00000395653 LCN8Q6JVE9 175 aa19.13■□□□□ 0.65
CLN3-207ENST00000395653 NHLRC1Q6VVB1 395 aa19.13■□□□□ 0.65
CLN3-207ENST00000395653 SSX8Q7RTT4 187 aa19.13■□□□□ 0.65
CLN3-207ENST00000395653 RNF113BQ8IZP6 322 aaKnown RBP19.13■□□□□ 0.65
CLN3-207ENST00000395653 MCUR1Q96AQ8 359 aa19.13■□□□□ 0.65
CLN3-207ENST00000395653 TAS2R5Q9NYW4 299 aa19.13■□□□□ 0.65
CLN3-207ENST00000395653 DEFB108AA8MXU0 73 aa19.12■□□□□ 0.65
CLN3-207ENST00000395653 hCG_2039718K7EN88 272 aa19.12■□□□□ 0.65
CLN3-207ENST00000395653 PIP5K1CO60331 668 aa19.12■□□□□ 0.65
CLN3-207ENST00000395653 SLC43A1O75387 559 aa19.12■□□□□ 0.65
CLN3-207ENST00000395653 KRT33AO76009 404 aa19.12■□□□□ 0.65
CLN3-207ENST00000395653 ATP6V1B2P21281 511 aa19.12■□□□□ 0.65
CLN3-207ENST00000395653 MPGP29372 298 aa19.12■□□□□ 0.65
CLN3-207ENST00000395653 TIMM23BQ5SRD1 257 aa19.12■□□□□ 0.65
CLN3-207ENST00000395653 FBXW10Q5XX13 1052 aa19.12■□□□□ 0.65
CLN3-207ENST00000395653 OR7E24Q6IFN5 339 aa19.12■□□□□ 0.65
CLN3-207ENST00000395653 CYP2R1Q6VVX0 501 aa19.12■□□□□ 0.65
CLN3-207ENST00000395653 P2RY8Q86VZ1 359 aa19.12■□□□□ 0.65
CLN3-207ENST00000395653 NRMQ8IXM6 262 aa19.12■□□□□ 0.65
CLN3-207ENST00000395653 C1orf162Q8NEQ5 155 aaPredicted RBP19.12■□□□□ 0.65
CLN3-207ENST00000395653 ANKK1Q8NFD2 765 aa19.12■□□□□ 0.65
CLN3-207ENST00000395653 SLC7A6OSQ96CW6 309 aaPredicted RBP19.12■□□□□ 0.65
CLN3-207ENST00000395653 BPIFA2Q96DR5 249 aa19.12■□□□□ 0.65
CLN3-207ENST00000395653 THTPAQ9BU02 230 aa19.12■□□□□ 0.65
CLN3-207ENST00000395653 HRNRQ86YZ3 2850 aaPredicted RBP19.12■□□□□ 0.65
CLN3-207ENST00000395653 A0A087WUU8 490 aa19.11■□□□□ 0.65
CLN3-207ENST00000395653 A0A1W2PRQ8 180 aa19.11■□□□□ 0.65
CLN3-207ENST00000395653 CIB4A0PJX0 185 aa19.11■□□□□ 0.65
CLN3-207ENST00000395653 OR5H1A6NKK0 313 aa19.11■□□□□ 0.65
CLN3-207ENST00000395653 C11orf98E9PRG8 122 aa19.11■□□□□ 0.65
CLN3-207ENST00000395653 GYG2O15488 501 aa19.11■□□□□ 0.65
CLN3-207ENST00000395653 SIAH2O43255 324 aa19.11■□□□□ 0.65
CLN3-207ENST00000395653 RAD51DO75771 328 aa19.11■□□□□ 0.65
CLN3-207ENST00000395653 H1F0P07305 194 aaKnown RBP19.11■□□□□ 0.65
CLN3-207ENST00000395653 IFI30P13284 250 aa19.11■□□□□ 0.65
CLN3-207ENST00000395653 FOXG1P55316 489 aaPredicted RBP19.11■□□□□ 0.65
CLN3-207ENST00000395653 TGFBR3Q03167 851 aa19.11■□□□□ 0.65
CLN3-207ENST00000395653 PRKCDQ05655 676 aa19.11■□□□□ 0.65
CLN3-207ENST00000395653 BNIP1Q12981 228 aa19.11■□□□□ 0.65
CLN3-207ENST00000395653 DGCR6Q14129 220 aa19.11■□□□□ 0.65
CLN3-207ENST00000395653 GABRA6Q16445 453 aa19.11■□□□□ 0.65
CLN3-207ENST00000395653 MBOAT2Q6ZWT7 520 aa19.11■□□□□ 0.65
CLN3-207ENST00000395653 DHFR2Q86XF0 187 aa19.11■□□□□ 0.65
CLN3-207ENST00000395653 WFDC8Q8IUA0 241 aa19.11■□□□□ 0.65
CLN3-207ENST00000395653 TMEM123Q8N131 208 aa19.11■□□□□ 0.65
CLN3-207ENST00000395653 ASB9Q96DX5 294 aa19.11■□□□□ 0.65
CLN3-207ENST00000395653 DHRS1Q96LJ7 313 aa19.11■□□□□ 0.65
CLN3-207ENST00000395653 MUS81Q96NY9 551 aa19.11■□□□□ 0.65
CLN3-207ENST00000395653 OR2M2Q96R28 347 aa19.11■□□□□ 0.65
CLN3-207ENST00000395653 PIP5K1AQ99755 562 aa19.11■□□□□ 0.65
CLN3-207ENST00000395653 MED29Q9NX70 200 aa19.11■□□□□ 0.65
CLN3-207ENST00000395653 CSMD1Q96PZ7 3565 aa19.1■□□□□ 0.65
CLN3-207ENST00000395653 ZNF587BE7ETH6 402 aa19.1■□□□□ 0.65
CLN3-207ENST00000395653 RNF13O43567 381 aa19.1■□□□□ 0.65
CLN3-207ENST00000395653 FABP3P05413 133 aa19.1■□□□□ 0.65
CLN3-207ENST00000395653 TSPAN19P0C672 248 aa19.1■□□□□ 0.65
CLN3-207ENST00000395653 LSM11P83369 360 aaKnown RBP eCLIP19.1■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 58.7 ms