RNA–Protein interactions for RNA: ENST00000394989.6

SNCA-204, Transcript of synuclein alpha, humanhuman

TSL 1 (best) BASIC

Gene SNCA, Length 3,167 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Synapse .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNCA-204ENST00000394989 PCNX3Q9H6A9 2034 aa12.7□□□□□ -0.38
SNCA-204ENST00000394989 NANSQ9NR45 359 aa12.7□□□□□ -0.38
SNCA-204ENST00000394989 SLC23A1Q9UHI7 598 aa12.7□□□□□ -0.38
SNCA-204ENST00000394989 A0A0G2JK05 382 aa12.69□□□□□ -0.38
SNCA-204ENST00000394989 B4DXG7 233 aa12.69□□□□□ -0.38
SNCA-204ENST00000394989 ZNF250P15622 560 aa12.69□□□□□ -0.38
SNCA-204ENST00000394989 PTGS2P35354 604 aa12.69□□□□□ -0.38
SNCA-204ENST00000394989 PON3Q15166 354 aa12.69□□□□□ -0.38
SNCA-204ENST00000394989 OR1N1Q8NGS0 311 aa12.69□□□□□ -0.38
SNCA-204ENST00000394989 TSSK2Q96PF2 358 aa12.69□□□□□ -0.38
SNCA-204ENST00000394989 ELF4Q99607 663 aaPredicted RBP12.69□□□□□ -0.38
SNCA-204ENST00000394989 LPAR4Q99677 370 aa12.69□□□□□ -0.38
SNCA-204ENST00000394989 DHRS9Q9BPW9 319 aa12.69□□□□□ -0.38
SNCA-204ENST00000394989 FBXO9Q9UK97 447 aaPredicted RBP12.69□□□□□ -0.38
SNCA-204ENST00000394989 A0A1W2PRG6 482 aa12.69□□□□□ -0.38
SNCA-204ENST00000394989 PRR32B1ATL7 298 aa12.69□□□□□ -0.38
SNCA-204ENST00000394989 ELK1P19419 428 aa12.69□□□□□ -0.38
SNCA-204ENST00000394989 GRK6P43250 576 aa12.69□□□□□ -0.38
SNCA-204ENST00000394989 NRG3P56975 720 aa12.69□□□□□ -0.38
SNCA-204ENST00000394989 QPRTQ15274 297 aa12.69□□□□□ -0.38
SNCA-204ENST00000394989 IDNKQ5T6J7 187 aa12.69□□□□□ -0.38
SNCA-204ENST00000394989 HBMQ6B0K9 141 aa12.69□□□□□ -0.38
SNCA-204ENST00000394989 LRRC20Q8TCA0 184 aa12.69□□□□□ -0.38
SNCA-204ENST00000394989 DAZLQ92904 295 aaKnown RBP12.69□□□□□ -0.38
SNCA-204ENST00000394989 SMAD5Q99717 465 aaKnown RBP12.69□□□□□ -0.38
SNCA-204ENST00000394989 LAT2Q9GZY6 243 aa12.69□□□□□ -0.38
SNCA-204ENST00000394989 MCUBQ9NWR8 336 aa12.69□□□□□ -0.38
SNCA-204ENST00000394989 ATXN7L1Q9ULK2 861 aaPredicted RBP12.69□□□□□ -0.38
SNCA-204ENST00000394989 FAM171A2A8MVW0 826 aa12.69□□□□□ -0.38
SNCA-204ENST00000394989 TO15178 435 aa12.69□□□□□ -0.38
SNCA-204ENST00000394989 OGG1O15527 345 aa12.69□□□□□ -0.38
SNCA-204ENST00000394989 HCRTR2O43614 444 aa12.69□□□□□ -0.38
SNCA-204ENST00000394989 F13BP05160 661 aa12.69□□□□□ -0.38
SNCA-204ENST00000394989 ABCD3P28288 659 aa12.69□□□□□ -0.38
SNCA-204ENST00000394989 RPS11P62280 158 aaKnown RBP eCLIP12.69□□□□□ -0.38
SNCA-204ENST00000394989 LEG1Q6P5S2 330 aa12.69□□□□□ -0.38
SNCA-204ENST00000394989 IL20RBQ6UXL0 311 aa12.69□□□□□ -0.38
SNCA-204ENST00000394989 SYS1Q8N2H4 156 aa12.69□□□□□ -0.38
SNCA-204ENST00000394989 C10orf53Q8N6V4 93 aa12.69□□□□□ -0.38
SNCA-204ENST00000394989 ZNF441Q8N8Z8 693 aa12.69□□□□□ -0.38
SNCA-204ENST00000394989 SLC38A9Q8NBW4 561 aa12.69□□□□□ -0.38
SNCA-204ENST00000394989 OR6K6Q8NGW6 343 aa12.69□□□□□ -0.38
SNCA-204ENST00000394989 ZNF563Q8TA94 476 aa12.69□□□□□ -0.38
SNCA-204ENST00000394989 TAAR8Q969N4 342 aa12.69□□□□□ -0.38
SNCA-204ENST00000394989 H3BUI4 141 aa12.68□□□□□ -0.38
SNCA-204ENST00000394989 HLA-DQB1P01920 261 aa12.68□□□□□ -0.38
SNCA-204ENST00000394989 IL12BP29460 328 aa12.68□□□□□ -0.38
SNCA-204ENST00000394989 DCAF7P61962 342 aa12.68□□□□□ -0.38
SNCA-204ENST00000394989 CDK5R1Q15078 307 aa12.68□□□□□ -0.38
SNCA-204ENST00000394989 TRAM1Q15629 374 aa12.68□□□□□ -0.38
SNCA-204ENST00000394989 ACSM3Q53FZ2 586 aa12.68□□□□□ -0.38
SNCA-204ENST00000394989 ALG10Q5BKT4 473 aa12.68□□□□□ -0.38
SNCA-204ENST00000394989 TOR2AQ5JU69 321 aa12.68□□□□□ -0.38
SNCA-204ENST00000394989 KMT5CQ86Y97 462 aa12.68□□□□□ -0.38
SNCA-204ENST00000394989 Q8N402 240 aa12.68□□□□□ -0.38
SNCA-204ENST00000394989 EXD3Q8N9H8 876 aa12.68□□□□□ -0.38
SNCA-204ENST00000394989 SMIM19Q96E16 107 aa12.68□□□□□ -0.38
SNCA-204ENST00000394989 DNAJA3Q96EY1 480 aa12.68□□□□□ -0.38
SNCA-204ENST00000394989 SLC22A4Q9H015 551 aa12.68□□□□□ -0.38
SNCA-204ENST00000394989 RNF121Q9H920 327 aa12.68□□□□□ -0.38
SNCA-204ENST00000394989 GALNT9Q9HCQ5 603 aa12.68□□□□□ -0.38
SNCA-204ENST00000394989 KCNN3Q9UGI6 736 aa12.68□□□□□ -0.38
SNCA-204ENST00000394989 MRTO4Q9UKD2 239 aaKnown RBP12.68□□□□□ -0.38
SNCA-204ENST00000394989 DCTN6O00399 190 aa12.68□□□□□ -0.38
SNCA-204ENST00000394989 CD14P08571 375 aa12.68□□□□□ -0.38
SNCA-204ENST00000394989 RPS5P46782 204 aaKnown RBP12.68□□□□□ -0.38
SNCA-204ENST00000394989 ACTA2P62736 377 aa12.68□□□□□ -0.38
SNCA-204ENST00000394989 ACTG2P63267 376 aa12.68□□□□□ -0.38
SNCA-204ENST00000394989 IL18Q14116 193 aa12.68□□□□□ -0.38
SNCA-204ENST00000394989 SLC35D3Q5M8T2 416 aa12.68□□□□□ -0.38
SNCA-204ENST00000394989 C1QL3Q5VWW1 255 aa12.68□□□□□ -0.38
SNCA-204ENST00000394989 SFXN4Q6P4A7 337 aa12.68□□□□□ -0.38
SNCA-204ENST00000394989 CDH24Q86UP0 819 aa12.68□□□□□ -0.38
SNCA-204ENST00000394989 RNF166Q96A37 237 aaPredicted RBP12.68□□□□□ -0.38
SNCA-204ENST00000394989 NCDNQ9UBB6 729 aa12.68□□□□□ -0.38
SNCA-204ENST00000394989 IGHV3-20A0A0C4DH32 117 aa12.67□□□□□ -0.38
SNCA-204ENST00000394989 A0A1B0GVC2 190 aa12.67□□□□□ -0.38
SNCA-204ENST00000394989 A6NIN4 97 aa12.67□□□□□ -0.38
SNCA-204ENST00000394989 ALG1L2C9J202 215 aa12.67□□□□□ -0.38
SNCA-204ENST00000394989 TIAF1O95411 115 aa12.67□□□□□ -0.38
SNCA-204ENST00000394989 SIRPAP78324 504 aa12.67□□□□□ -0.38
SNCA-204ENST00000394989 RPL18Q07020 188 aaKnown RBP12.67□□□□□ -0.38
SNCA-204ENST00000394989 PLCXD2Q0VAA5 305 aa12.67□□□□□ -0.38
SNCA-204ENST00000394989 RIN1Q13671 783 aa12.67□□□□□ -0.38
SNCA-204ENST00000394989 POU4F3Q15319 338 aa12.67□□□□□ -0.38
SNCA-204ENST00000394989 SLC25A35Q3KQZ1 300 aa12.67□□□□□ -0.38
SNCA-204ENST00000394989 LCN1P1Q5VSP4 162 aa12.67□□□□□ -0.38
SNCA-204ENST00000394989 MZT2AQ6P582 158 aa12.67□□□□□ -0.38
SNCA-204ENST00000394989 METAP1DQ6UB28 335 aaPredicted RBP12.67□□□□□ -0.38
SNCA-204ENST00000394989 LSM14AQ8ND56 463 aaKnown RBP12.67□□□□□ -0.38
SNCA-204ENST00000394989 DACT3Q96B18 629 aaPredicted RBP12.67□□□□□ -0.38
SNCA-204ENST00000394989 GNG8Q9UK08 70 aa12.67□□□□□ -0.38
SNCA-204ENST00000394989 SIT1Q9Y3P8 196 aa12.67□□□□□ -0.38
SNCA-204ENST00000394989 LY6G6EA0A0G2JKS1 128 aa12.67□□□□□ -0.38
SNCA-204ENST00000394989 A0A1W2PPK0 400 aa12.67□□□□□ -0.38
SNCA-204ENST00000394989 IDSB3KWA1 339 aa12.67□□□□□ -0.38
SNCA-204ENST00000394989 ADAM10O14672 748 aa12.67□□□□□ -0.38
SNCA-204ENST00000394989 NUPL2O15504 423 aaKnown RBP12.67□□□□□ -0.38
SNCA-204ENST00000394989 GLCEO94923 617 aa12.67□□□□□ -0.38
SNCA-204ENST00000394989 SLC2A2P11168 524 aaPredicted RBP12.67□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms