RNA–Protein interactions for RNA: ENST00000394943.7

LIMA1-202, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,669 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-202ENST00000394943 RSRC1Q96IZ7 334 aaKnown RBP6.21□□□□□ -1.42
LIMA1-202ENST00000394943 MUS81Q96NY9 551 aa6.21□□□□□ -1.42
LIMA1-202ENST00000394943 PKP2Q99959 881 aa6.21□□□□□ -1.42
LIMA1-202ENST00000394943 NELFAQ9H3P2 528 aa6.21□□□□□ -1.42
LIMA1-202ENST00000394943 FN3KQ9H479 309 aa6.21□□□□□ -1.42
LIMA1-202ENST00000394943 SELENONQ9NZV5 590 aa6.21□□□□□ -1.42
LIMA1-202ENST00000394943 RNF6Q9Y252 685 aa6.21□□□□□ -1.42
LIMA1-202ENST00000394943 CELSR3Q9NYQ7 3312 aa6.21□□□□□ -1.42
LIMA1-202ENST00000394943 FREM3P0C091 2139 aa6.21□□□□□ -1.42
LIMA1-202ENST00000394943 NINQ8N4C6 2090 aa6.21□□□□□ -1.42
LIMA1-202ENST00000394943 H3BML4 177 aa6.21□□□□□ -1.42
LIMA1-202ENST00000394943 hCG_2039718K7EN88 272 aa6.21□□□□□ -1.42
LIMA1-202ENST00000394943 M0R082 166 aa6.21□□□□□ -1.42
LIMA1-202ENST00000394943 EIF1AYO14602 144 aaKnown RBP6.21□□□□□ -1.42
LIMA1-202ENST00000394943 RAMP1O60894 148 aa6.21□□□□□ -1.42
LIMA1-202ENST00000394943 SYNGR4O95473 234 aa6.21□□□□□ -1.42
LIMA1-202ENST00000394943 OSMP13725 252 aa6.21□□□□□ -1.42
LIMA1-202ENST00000394943 FUT1P19526 365 aa6.21□□□□□ -1.42
LIMA1-202ENST00000394943 KLK2P20151 261 aa6.21□□□□□ -1.42
LIMA1-202ENST00000394943 RFX3P48380 749 aa6.21□□□□□ -1.42
LIMA1-202ENST00000394943 CENPAP49450 140 aa6.21□□□□□ -1.42
LIMA1-202ENST00000394943 PER3P56645 1201 aa6.21□□□□□ -1.42
LIMA1-202ENST00000394943 GGTLC2Q14390 218 aa6.21□□□□□ -1.42
LIMA1-202ENST00000394943 DAZAP2Q15038 168 aaPredicted RBP6.21□□□□□ -1.42
LIMA1-202ENST00000394943 P2RY6Q15077 328 aa6.21□□□□□ -1.42
LIMA1-202ENST00000394943 TEX30Q5JUR7 227 aa6.21□□□□□ -1.42
LIMA1-202ENST00000394943 NRMQ8IXM6 262 aa6.21□□□□□ -1.42
LIMA1-202ENST00000394943 FAM26EQ8N5C1 309 aa6.21□□□□□ -1.42
LIMA1-202ENST00000394943 ZNF417Q8TAU3 575 aa6.21□□□□□ -1.42
LIMA1-202ENST00000394943 GIPC3Q8TF64 312 aa6.21□□□□□ -1.42
LIMA1-202ENST00000394943 IGFBPL1Q8WX77 278 aa6.21□□□□□ -1.42
LIMA1-202ENST00000394943 ROBO4Q8WZ75 1007 aa6.21□□□□□ -1.42
LIMA1-202ENST00000394943 ITFG2Q969R8 447 aa6.21□□□□□ -1.42
LIMA1-202ENST00000394943 OR5B2Q96R09 309 aa6.21□□□□□ -1.42
LIMA1-202ENST00000394943 ZNF587Q96SQ5 575 aaPredicted RBP6.21□□□□□ -1.42
LIMA1-202ENST00000394943 ENOPH1Q9UHY7 261 aa6.21□□□□□ -1.42
LIMA1-202ENST00000394943 ATPIF1Q9UII2 106 aa6.21□□□□□ -1.42
LIMA1-202ENST00000394943 ERRFI1Q9UJM3 462 aaPredicted RBP6.21□□□□□ -1.42
LIMA1-202ENST00000394943 CAMK2AQ9UQM7 478 aa6.21□□□□□ -1.42
LIMA1-202ENST00000394943 POFUT2Q9Y2G5 429 aa6.21□□□□□ -1.42
LIMA1-202ENST00000394943 CFAP46Q8IYW2 2715 aa6.21□□□□□ -1.42
LIMA1-202ENST00000394943 A6NIZ1 184 aa6.2□□□□□ -1.42
LIMA1-202ENST00000394943 TMIGD3P0DMS9 266 aaPredicted RBP6.2□□□□□ -1.42
LIMA1-202ENST00000394943 GABRB1P18505 474 aa6.2□□□□□ -1.42
LIMA1-202ENST00000394943 RPS5P46782 204 aaKnown RBP6.2□□□□□ -1.42
LIMA1-202ENST00000394943 UQCRFS1P47985 274 aa6.2□□□□□ -1.42
LIMA1-202ENST00000394943 DAP3P51398 398 aaKnown RBP6.2□□□□□ -1.42
LIMA1-202ENST00000394943 RAP1BP61224 184 aa6.2□□□□□ -1.42
LIMA1-202ENST00000394943 RAP1AP62834 184 aa6.2□□□□□ -1.42
LIMA1-202ENST00000394943 LSM11P83369 360 aaKnown RBP eCLIP6.2□□□□□ -1.42
LIMA1-202ENST00000394943 SPIBQ01892 262 aa6.2□□□□□ -1.42
LIMA1-202ENST00000394943 RPL18Q07020 188 aaKnown RBP6.2□□□□□ -1.42
LIMA1-202ENST00000394943 PON3Q15166 354 aa6.2□□□□□ -1.42
LIMA1-202ENST00000394943 OTUD3Q5T2D3 398 aaPredicted RBP6.2□□□□□ -1.42
LIMA1-202ENST00000394943 SLX4IPQ5VYV7 408 aa6.2□□□□□ -1.42
LIMA1-202ENST00000394943 TBPL2Q6SJ96 375 aa6.2□□□□□ -1.42
LIMA1-202ENST00000394943 USP51Q70EK9 711 aa6.2□□□□□ -1.42
LIMA1-202ENST00000394943 CCDC36Q8IYA8 594 aa6.2□□□□□ -1.42
LIMA1-202ENST00000394943 CADM2Q8N3J6 435 aa6.2□□□□□ -1.42
LIMA1-202ENST00000394943 RPRMLQ8N4K4 120 aa6.2□□□□□ -1.42
LIMA1-202ENST00000394943 ZNF614Q8N883 585 aa6.2□□□□□ -1.42
LIMA1-202ENST00000394943 POMGNT2Q8NAT1 580 aa6.2□□□□□ -1.42
LIMA1-202ENST00000394943 PSMG3-AS1Q96PY0 264 aa6.2□□□□□ -1.42
LIMA1-202ENST00000394943 GRIP2Q9C0E4 1043 aa6.2□□□□□ -1.42
LIMA1-202ENST00000394943 DCLRE1BQ9H816 532 aa6.2□□□□□ -1.42
LIMA1-202ENST00000394943 REEP1Q9H902 201 aa6.2□□□□□ -1.42
LIMA1-202ENST00000394943 MRPS18AQ9NVS2 196 aaKnown RBP6.2□□□□□ -1.42
LIMA1-202ENST00000394943 PARPBPQ9NWS1 579 aa6.2□□□□□ -1.42
LIMA1-202ENST00000394943 FAM32AQ9Y421 112 aaKnown RBP6.2□□□□□ -1.42
LIMA1-202ENST00000394943 A0A1W2PNR3 127 aa6.2□□□□□ -1.42
LIMA1-202ENST00000394943 EFCAB9A8MZ26 197 aa6.2□□□□□ -1.42
LIMA1-202ENST00000394943 NPIPA2E9PIF3 369 aa6.2□□□□□ -1.42
LIMA1-202ENST00000394943 NPIPA3F8WFD2 350 aa6.2□□□□□ -1.42
LIMA1-202ENST00000394943 NDUFB2O95178 105 aa6.2□□□□□ -1.42
LIMA1-202ENST00000394943 HRGP04196 525 aa6.2□□□□□ -1.42
LIMA1-202ENST00000394943 CD14P08571 375 aa6.2□□□□□ -1.42
LIMA1-202ENST00000394943 ABOP16442 354 aa6.2□□□□□ -1.42
LIMA1-202ENST00000394943 SDHAP31040 664 aa6.2□□□□□ -1.42
LIMA1-202ENST00000394943 CASP6P55212 293 aa6.2□□□□□ -1.42
LIMA1-202ENST00000394943 TMEM99Q8N816 258 aa6.2□□□□□ -1.42
LIMA1-202ENST00000394943 OR8D4Q8NGM9 314 aa6.2□□□□□ -1.42
LIMA1-202ENST00000394943 RND1Q92730 232 aa6.2□□□□□ -1.42
LIMA1-202ENST00000394943 TSPAN32Q96QS1 320 aa6.2□□□□□ -1.42
LIMA1-202ENST00000394943 TMEM204Q9BSN7 226 aa6.2□□□□□ -1.42
LIMA1-202ENST00000394943 RACGAP1Q9H0H5 632 aa6.2□□□□□ -1.42
LIMA1-202ENST00000394943 B3GNT2Q9NY97 397 aa6.2□□□□□ -1.42
LIMA1-202ENST00000394943 KLHL21Q9UJP4 597 aa6.2□□□□□ -1.42
LIMA1-202ENST00000394943 TINAGQ9UJW2 476 aa6.2□□□□□ -1.42
LIMA1-202ENST00000394943 MED12LQ86YW9 2145 aa6.2□□□□□ -1.42
LIMA1-202ENST00000394943 TMCC2O75069 709 aa6.2□□□□□ -1.42
LIMA1-202ENST00000394943 CLDN14O95500 239 aa6.2□□□□□ -1.42
LIMA1-202ENST00000394943 GAAP10253 952 aa6.2□□□□□ -1.42
LIMA1-202ENST00000394943 ALDH3A2P51648 485 aa6.2□□□□□ -1.42
LIMA1-202ENST00000394943 RPL27P61353 136 aaKnown RBP6.2□□□□□ -1.42
LIMA1-202ENST00000394943 KEAP1Q14145 624 aa6.2□□□□□ -1.42
LIMA1-202ENST00000394943 ZNF474Q6S9Z5 364 aaPredicted RBP6.2□□□□□ -1.42
LIMA1-202ENST00000394943 LINGO2Q7L985 606 aa6.2□□□□□ -1.42
LIMA1-202ENST00000394943 GALNT5Q7Z7M9 940 aa6.2□□□□□ -1.42
LIMA1-202ENST00000394943 SYT9Q86SS6 491 aa6.2□□□□□ -1.42
LIMA1-202ENST00000394943 OR10G2Q8NGC3 310 aa6.2□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 45.1 ms