RNA–Protein interactions for RNA: ENST00000375820.8

COL4A1-201, Transcript of collagen type IV alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL4A1, Length 6,532 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-201ENST00000375820 ARHGEF15O94989 841 aa12.71□□□□□ -0.38
COL4A1-201ENST00000375820 HOXD9P28356 352 aaPredicted RBP12.71□□□□□ -0.38
COL4A1-201ENST00000375820 GABRB3P28472 473 aa12.71□□□□□ -0.38
COL4A1-201ENST00000375820 NUDT1P36639 197 aa12.71□□□□□ -0.38
COL4A1-201ENST00000375820 CARD18P57730 90 aa12.71□□□□□ -0.38
COL4A1-201ENST00000375820 FRMPD2BQ6IN97 320 aa12.71□□□□□ -0.38
COL4A1-201ENST00000375820 PRSS45Q7RTY3 260 aa12.71□□□□□ -0.38
COL4A1-201ENST00000375820 SLC39A11Q8N1S5 342 aa12.71□□□□□ -0.38
COL4A1-201ENST00000375820 LILRA3Q8N6C8 439 aaPredicted RBP12.71□□□□□ -0.38
COL4A1-201ENST00000375820 SLC38A5Q8WUX1 472 aa12.71□□□□□ -0.38
COL4A1-201ENST00000375820 GHSRQ92847 366 aa12.71□□□□□ -0.38
COL4A1-201ENST00000375820 ARHGAP33O14559 1287 aa12.71□□□□□ -0.38
COL4A1-201ENST00000375820 CYB5BO43169 146 aa12.71□□□□□ -0.38
COL4A1-201ENST00000375820 HTR2CP28335 458 aa12.71□□□□□ -0.38
COL4A1-201ENST00000375820 ELLP55199 621 aaPredicted RBP12.71□□□□□ -0.38
COL4A1-201ENST00000375820 ADPRMQ3LIE5 342 aa12.71□□□□□ -0.38
COL4A1-201ENST00000375820 DDX51Q8N8A6 666 aaKnown RBP eCLIP12.71□□□□□ -0.38
COL4A1-201ENST00000375820 TMEM104Q8NE00 496 aa12.71□□□□□ -0.38
COL4A1-201ENST00000375820 OR11L1Q8NGX0 322 aa12.71□□□□□ -0.38
COL4A1-201ENST00000375820 NUDT8Q8WV74 236 aa12.71□□□□□ -0.38
COL4A1-201ENST00000375820 LIN7BQ9HAP6 207 aa12.71□□□□□ -0.38
COL4A1-201ENST00000375820 XRN1Q8IZH2 1706 aaKnown RBP12.7□□□□□ -0.38
COL4A1-201ENST00000375820 ABHD16AO95870 558 aa12.7□□□□□ -0.38
COL4A1-201ENST00000375820 GDNFP39905 211 aa12.7□□□□□ -0.38
COL4A1-201ENST00000375820 HCCSP53701 268 aa12.7□□□□□ -0.38
COL4A1-201ENST00000375820 OR1D5P58170 312 aa12.7□□□□□ -0.38
COL4A1-201ENST00000375820 TAS2R46P59540 309 aa12.7□□□□□ -0.38
COL4A1-201ENST00000375820 TNFRSF17Q02223 184 aa12.7□□□□□ -0.38
COL4A1-201ENST00000375820 SF3B4Q15427 424 aaKnown RBP eCLIP12.7□□□□□ -0.38
COL4A1-201ENST00000375820 METTL4Q8N3J2 472 aa12.7□□□□□ -0.38
COL4A1-201ENST00000375820 ZNF740Q8NDX6 193 aa12.7□□□□□ -0.38
COL4A1-201ENST00000375820 ASB11Q8WXH4 323 aa12.7□□□□□ -0.38
COL4A1-201ENST00000375820 HRASLS5Q96KN8 279 aa12.7□□□□□ -0.38
COL4A1-201ENST00000375820 UHRF2Q96PU4 802 aa12.7□□□□□ -0.38
COL4A1-201ENST00000375820 C20orf27Q9GZN8 174 aa12.7□□□□□ -0.38
COL4A1-201ENST00000375820 LANCL2Q9NS86 450 aa12.7□□□□□ -0.38
COL4A1-201ENST00000375820 FAM166BA8MTA8 275 aa12.7□□□□□ -0.38
COL4A1-201ENST00000375820 CCSO14618 274 aa12.7□□□□□ -0.38
COL4A1-201ENST00000375820 PKDCCQ504Y2 493 aa12.7□□□□□ -0.38
COL4A1-201ENST00000375820 SOWAHCQ53LP3 525 aaPredicted RBP12.7□□□□□ -0.38
COL4A1-201ENST00000375820 NRARPQ7Z6K4 114 aa12.7□□□□□ -0.38
COL4A1-201ENST00000375820 PFN4Q8NHR9 129 aa12.7□□□□□ -0.38
COL4A1-201ENST00000375820 KCNJ15Q99712 375 aa12.7□□□□□ -0.38
COL4A1-201ENST00000375820 CENPOQ9BU64 300 aa12.7□□□□□ -0.38
COL4A1-201ENST00000375820 GORASP2Q9H8Y8 452 aa12.7□□□□□ -0.38
COL4A1-201ENST00000375820 GLI4P10075 376 aa12.7□□□□□ -0.38
COL4A1-201ENST00000375820 GJA4P35212 333 aa12.7□□□□□ -0.38
COL4A1-201ENST00000375820 PDZD11Q5EBL8 140 aa12.7□□□□□ -0.38
COL4A1-201ENST00000375820 HTR3DQ70Z44 454 aa12.7□□□□□ -0.38
COL4A1-201ENST00000375820 CYS1Q717R9 158 aa12.7□□□□□ -0.38
COL4A1-201ENST00000375820 CBARPQ8N350 705 aaPredicted RBP12.7□□□□□ -0.38
COL4A1-201ENST00000375820 ANKRD19PQ9H560 264 aa12.7□□□□□ -0.38
COL4A1-201ENST00000375820 LHX3Q9UBR4 397 aa12.7□□□□□ -0.38
COL4A1-201ENST00000375820 ZFP92A6NM28 416 aa12.7□□□□□ -0.38
COL4A1-201ENST00000375820 NPY4RP50391 375 aa12.7□□□□□ -0.38
COL4A1-201ENST00000375820 RPS27AP62979 156 aaKnown RBP12.7□□□□□ -0.38
COL4A1-201ENST00000375820 UBA52P62987 128 aaKnown RBP12.7□□□□□ -0.38
COL4A1-201ENST00000375820 KCNAB1Q14722 419 aa12.7□□□□□ -0.38
COL4A1-201ENST00000375820 SLC22A25Q6T423 547 aa12.7□□□□□ -0.38
COL4A1-201ENST00000375820 MFSD9Q8NBP5 474 aa12.7□□□□□ -0.38
COL4A1-201ENST00000375820 UPRTQ96BW1 309 aa12.7□□□□□ -0.38
COL4A1-201ENST00000375820 RTP4Q96DX8 246 aa12.7□□□□□ -0.38
COL4A1-201ENST00000375820 HCFC2Q9Y5Z7 792 aa12.7□□□□□ -0.38
COL4A1-201ENST00000375820 MYH13Q9UKX3 1938 aa12.7□□□□□ -0.38
COL4A1-201ENST00000375820 IGKV6-21A0A0C4DH24 114 aa12.7□□□□□ -0.38
COL4A1-201ENST00000375820 DRGXA6NNA5 263 aa12.7□□□□□ -0.38
COL4A1-201ENST00000375820 GFRA2O00451 464 aa12.7□□□□□ -0.38
COL4A1-201ENST00000375820 PTHP01270 115 aa12.7□□□□□ -0.38
COL4A1-201ENST00000375820 HLA-DOBP13765 273 aa12.7□□□□□ -0.38
COL4A1-201ENST00000375820 SLC5A2P31639 672 aa12.7□□□□□ -0.38
COL4A1-201ENST00000375820 OR2B11Q5JQS5 317 aa12.7□□□□□ -0.38
COL4A1-201ENST00000375820 OTPQ5XKR4 325 aa12.7□□□□□ -0.38
COL4A1-201ENST00000375820 Q6ZTK2 550 aa12.7□□□□□ -0.38
COL4A1-201ENST00000375820 OR56B4Q8NH76 319 aa12.7□□□□□ -0.38
COL4A1-201ENST00000375820 TMED7-TICAM2A0A0A6YYA0 188 aa12.69□□□□□ -0.38
COL4A1-201ENST00000375820 SLC31A2O15432 143 aa12.69□□□□□ -0.38
COL4A1-201ENST00000375820 OR13C7P0DN81 318 aa12.69□□□□□ -0.38
COL4A1-201ENST00000375820 OPRD1P41143 372 aa12.69□□□□□ -0.38
COL4A1-201ENST00000375820 SLC35A2P78381 396 aa12.69□□□□□ -0.38
COL4A1-201ENST00000375820 MFGE8Q08431 387 aaPredicted RBP12.69□□□□□ -0.38
COL4A1-201ENST00000375820 MLLT11Q13015 90 aaPredicted RBP12.69□□□□□ -0.38
COL4A1-201ENST00000375820 ZNF511Q8NB15 262 aa12.69□□□□□ -0.38
COL4A1-201ENST00000375820 MITD1Q8WV92 249 aa12.69□□□□□ -0.38
COL4A1-201ENST00000375820 PGAP3Q96FM1 320 aaPredicted RBP12.69□□□□□ -0.38
COL4A1-201ENST00000375820 BANF2Q9H503 90 aa12.69□□□□□ -0.38
COL4A1-201ENST00000375820 SLC39A9Q9NUM3 307 aa12.69□□□□□ -0.38
COL4A1-201ENST00000375820 KIF25Q9UIL4 384 aa12.69□□□□□ -0.38
COL4A1-201ENST00000375820 TMED7Q9Y3B3 224 aa12.69□□□□□ -0.38
COL4A1-201ENST00000375820 WIF1Q9Y5W5 379 aa12.69□□□□□ -0.38
COL4A1-201ENST00000375820 OR6C76A6NM76 312 aa12.69□□□□□ -0.38
COL4A1-201ENST00000375820 CNIH1O95406 144 aa12.69□□□□□ -0.38
COL4A1-201ENST00000375820 PENKP01210 267 aaPredicted RBP12.69□□□□□ -0.38
COL4A1-201ENST00000375820 CAMK2BQ13554 666 aa12.69□□□□□ -0.38
COL4A1-201ENST00000375820 OPN5Q6U736 354 aa12.69□□□□□ -0.38
COL4A1-201ENST00000375820 BAGE3Q86Y29 109 aa12.69□□□□□ -0.38
COL4A1-201ENST00000375820 BAGE2Q86Y30 109 aa12.69□□□□□ -0.38
COL4A1-201ENST00000375820 CELF2-AS1Q8N7Q2 184 aa12.69□□□□□ -0.38
COL4A1-201ENST00000375820 TMEM106AQ96A25 262 aa12.69□□□□□ -0.38
COL4A1-201ENST00000375820 ZNF582Q96NG8 517 aaPredicted RBP12.69□□□□□ -0.38
COL4A1-201ENST00000375820 TXN2Q99757 166 aa12.69□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms