RNA–Protein interactions for RNA: ENST00000360579.11

VPS29-201, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 1,091 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-201ENST00000360579 ZNF275Q9NSD4 429 aaPredicted RBP11.9□□□□□ -0.5
VPS29-201ENST00000360579 ZDHHC2Q9UIJ5 367 aa11.9□□□□□ -0.5
VPS29-201ENST00000360579 ZNF346Q9UL40 294 aaKnown RBP11.9□□□□□ -0.5
VPS29-201ENST00000360579 LOC105371242A0A075B767 164 aa11.89□□□□□ -0.51
VPS29-201ENST00000360579 CDHR4A6H8M9 788 aa11.89□□□□□ -0.51
VPS29-201ENST00000360579 ZNF99A8MXY4 864 aaPredicted RBP11.89□□□□□ -0.51
VPS29-201ENST00000360579 J3QLI3 93 aa11.89□□□□□ -0.51
VPS29-201ENST00000360579 NPIPB7O75200 414 aa11.89□□□□□ -0.51
VPS29-201ENST00000360579 SHBGP04278 402 aa11.89□□□□□ -0.51
VPS29-201ENST00000360579 NR2F1P10589 423 aa11.89□□□□□ -0.51
VPS29-201ENST00000360579 PNMTP11086 282 aa11.89□□□□□ -0.51
VPS29-201ENST00000360579 GALK2Q01415 458 aa11.89□□□□□ -0.51
VPS29-201ENST00000360579 BNIP2Q12982 314 aa11.89□□□□□ -0.51
VPS29-201ENST00000360579 CASP8Q14790 479 aa11.89□□□□□ -0.51
VPS29-201ENST00000360579 GSG1Q2KHT4 349 aa11.89□□□□□ -0.51
VPS29-201ENST00000360579 CEACAM16Q2WEN9 425 aa11.89□□□□□ -0.51
VPS29-201ENST00000360579 MMEL1Q495T6 779 aa11.89□□□□□ -0.51
VPS29-201ENST00000360579 LIN52Q52LA3 116 aa11.89□□□□□ -0.51
VPS29-201ENST00000360579 GKAP1Q5VSY0 366 aaPredicted RBP11.89□□□□□ -0.51
VPS29-201ENST00000360579 ACSM5Q6NUN0 579 aa11.89□□□□□ -0.51
VPS29-201ENST00000360579 C1QL2Q7Z5L3 287 aa11.89□□□□□ -0.51
VPS29-201ENST00000360579 CARM1Q86X55 608 aa11.89□□□□□ -0.51
VPS29-201ENST00000360579 RNF130Q86XS8 419 aa11.89□□□□□ -0.51
VPS29-201ENST00000360579 C16orf45Q96MC5 204 aaPredicted RBP11.89□□□□□ -0.51
VPS29-201ENST00000360579 MECRQ9BV79 373 aa11.89□□□□□ -0.51
VPS29-201ENST00000360579 DENND2DQ9H6A0 471 aaPredicted RBP11.89□□□□□ -0.51
VPS29-201ENST00000360579 NTN4Q9HB63 628 aa11.89□□□□□ -0.51
VPS29-201ENST00000360579 G6PC2Q9NQR9 355 aa11.89□□□□□ -0.51
VPS29-201ENST00000360579 PCDHGB1Q9Y5G3 927 aa11.89□□□□□ -0.51
VPS29-201ENST00000360579 ZNF503-AS2A6NEH8 195 aa11.88□□□□□ -0.51
VPS29-201ENST00000360579 FTCDNL1E5RQL4 147 aa11.88□□□□□ -0.51
VPS29-201ENST00000360579 NUDT17P0C025 328 aa11.88□□□□□ -0.51
VPS29-201ENST00000360579 GKN3PP0CG01 181 aa11.88□□□□□ -0.51
VPS29-201ENST00000360579 NCF2P19878 526 aaPredicted RBP11.88□□□□□ -0.51
VPS29-201ENST00000360579 TCN1P20061 433 aaPredicted RBP11.88□□□□□ -0.51
VPS29-201ENST00000360579 LSP1P33241 339 aa11.88□□□□□ -0.51
VPS29-201ENST00000360579 ACAA2P42765 397 aaKnown RBP11.88□□□□□ -0.51
VPS29-201ENST00000360579 ALDH3B1P43353 468 aa11.88□□□□□ -0.51
VPS29-201ENST00000360579 CLNS1AP54105 237 aaKnown RBP11.88□□□□□ -0.51
VPS29-201ENST00000360579 C1DQ13901 141 aaKnown RBP11.88□□□□□ -0.51
VPS29-201ENST00000360579 C1orf229Q6ZS94 237 aaPredicted RBP11.88□□□□□ -0.51
VPS29-201ENST00000360579 NANPQ8TBE9 248 aa11.88□□□□□ -0.51
VPS29-201ENST00000360579 MGARPQ8TDB4 240 aa11.88□□□□□ -0.51
VPS29-201ENST00000360579 SLC25A36Q96CQ1 311 aa11.88□□□□□ -0.51
VPS29-201ENST00000360579 RAB39BQ96DA2 213 aa11.88□□□□□ -0.51
VPS29-201ENST00000360579 CCDC115Q96NT0 180 aa11.88□□□□□ -0.51
VPS29-201ENST00000360579 OXGR1Q96P68 337 aa11.88□□□□□ -0.51
VPS29-201ENST00000360579 SLC6A7Q99884 636 aa11.88□□□□□ -0.51
VPS29-201ENST00000360579 SYT3Q9BQG1 590 aa11.88□□□□□ -0.51
VPS29-201ENST00000360579 ZNF665Q9H7R5 613 aa11.88□□□□□ -0.51
VPS29-201ENST00000360579 DDX28Q9NUL7 540 aaKnown RBP11.88□□□□□ -0.51
VPS29-201ENST00000360579 RLIMQ9NVW2 624 aa11.88□□□□□ -0.51
VPS29-201ENST00000360579 B3GNT2Q9NY97 397 aa11.88□□□□□ -0.51
VPS29-201ENST00000360579 BTNL2Q9UIR0 455 aa11.88□□□□□ -0.51
VPS29-201ENST00000360579 FBXL3Q9UKT7 428 aa11.88□□□□□ -0.51
VPS29-201ENST00000360579 A0A1W2PPW3 197 aa11.87□□□□□ -0.51
VPS29-201ENST00000360579 WNT9BO14905 357 aa11.87□□□□□ -0.51
VPS29-201ENST00000360579 MPZL1O95297 269 aa11.87□□□□□ -0.51
VPS29-201ENST00000360579 CD79AP11912 226 aa11.87□□□□□ -0.51
VPS29-201ENST00000360579 ZNF35P13682 527 aa11.87□□□□□ -0.51
VPS29-201ENST00000360579 GATA3P23771 443 aa11.87□□□□□ -0.51
VPS29-201ENST00000360579 FPR2P25090 351 aa11.87□□□□□ -0.51
VPS29-201ENST00000360579 ARRB2P32121 409 aa11.87□□□□□ -0.51
VPS29-201ENST00000360579 S100A3P33764 101 aa11.87□□□□□ -0.51
VPS29-201ENST00000360579 LRRC74AQ0VAA2 488 aa11.87□□□□□ -0.51
VPS29-201ENST00000360579 MSMPQ1L6U9 139 aa11.87□□□□□ -0.51
VPS29-201ENST00000360579 SPANXN4Q5MJ08 99 aa11.87□□□□□ -0.51
VPS29-201ENST00000360579 RNF220Q5VTB9 566 aa11.87□□□□□ -0.51
VPS29-201ENST00000360579 LSRQ86X29 649 aaPredicted RBP11.87□□□□□ -0.51
VPS29-201ENST00000360579 SNX32Q86XE0 403 aa11.87□□□□□ -0.51
VPS29-201ENST00000360579 GSPT2Q8IYD1 628 aaKnown RBP11.87□□□□□ -0.51
VPS29-201ENST00000360579 KDM8Q8N371 416 aa11.87□□□□□ -0.51
VPS29-201ENST00000360579 OR52P1PQ8NH57 321 aa11.87□□□□□ -0.51
VPS29-201ENST00000360579 EPS8L3Q8TE67 593 aaKnown RBP11.87□□□□□ -0.51
VPS29-201ENST00000360579 UBLCP1Q8WVY7 318 aaPredicted RBP11.87□□□□□ -0.51
VPS29-201ENST00000360579 YIPF5Q969M3 257 aa11.87□□□□□ -0.51
VPS29-201ENST00000360579 ARMC7Q9H6L4 198 aa11.87□□□□□ -0.51
VPS29-201ENST00000360579 AKTIPQ9H8T0 292 aa11.87□□□□□ -0.51
VPS29-201ENST00000360579 CACYBPQ9HB71 228 aaKnown RBP11.87□□□□□ -0.51
VPS29-201ENST00000360579 CALML5Q9NZT1 146 aa11.87□□□□□ -0.51
VPS29-201ENST00000360579 GPR160Q9UJ42 338 aa11.87□□□□□ -0.51
VPS29-201ENST00000360579 CCDC154A6NI56 674 aa11.86□□□□□ -0.51
VPS29-201ENST00000360579 E9PBE3 544 aa11.86□□□□□ -0.51
VPS29-201ENST00000360579 AIM2O14862 343 aa11.86□□□□□ -0.51
VPS29-201ENST00000360579 OR2T1O43869 369 aa11.86□□□□□ -0.51
VPS29-201ENST00000360579 RP2O75695 350 aa11.86□□□□□ -0.51
VPS29-201ENST00000360579 RAB36O95755 333 aa11.86□□□□□ -0.51
VPS29-201ENST00000360579 AVPP01185 164 aa11.86□□□□□ -0.51
VPS29-201ENST00000360579 HLA-HP01893 362 aa11.86□□□□□ -0.51
VPS29-201ENST00000360579 HKR1P10072 659 aa11.86□□□□□ -0.51
VPS29-201ENST00000360579 ZNF14P17017 642 aaPredicted RBP11.86□□□□□ -0.51
VPS29-201ENST00000360579 SEC24CP53992 1094 aa11.86□□□□□ -0.51
VPS29-201ENST00000360579 SELENOVP59797 346 aa11.86□□□□□ -0.51
VPS29-201ENST00000360579 UBA52P62987 128 aaKnown RBP11.86□□□□□ -0.51
VPS29-201ENST00000360579 DEFA6Q01524 100 aa11.86□□□□□ -0.51
VPS29-201ENST00000360579 LARS2Q15031 903 aaKnown RBP11.86□□□□□ -0.51
VPS29-201ENST00000360579 FXNQ16595 210 aa11.86□□□□□ -0.51
VPS29-201ENST00000360579 GLIPR1L2Q4G1C9 344 aa11.86□□□□□ -0.51
VPS29-201ENST00000360579 DCAF12L2Q5VW00 463 aa11.86□□□□□ -0.51
VPS29-201ENST00000360579 ATG16L1Q676U5 607 aa11.86□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms