RNA–Protein interactions for RNA: ENST00000356786.9

CCDC88B-202, Transcript of coiled-coil domain containing 88B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC88B, Length 4,915 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-202ENST00000356786 ZAR1LA6NP61 321 aa18.11■□□□□ 0.49
CCDC88B-202ENST00000356786 FOSL1P15407 271 aa18.11■□□□□ 0.49
CCDC88B-202ENST00000356786 ITGB7P26010 798 aa18.11■□□□□ 0.49
CCDC88B-202ENST00000356786 MRPL49Q13405 166 aaKnown RBP18.11■□□□□ 0.49
CCDC88B-202ENST00000356786 SIGIRRQ6IA17 410 aa18.11■□□□□ 0.49
CCDC88B-202ENST00000356786 ALKAL1Q6UXT8 129 aa18.11■□□□□ 0.49
CCDC88B-202ENST00000356786 Q6ZTK2 550 aa18.11■□□□□ 0.49
CCDC88B-202ENST00000356786 GIMAP5Q96F15 307 aa18.11■□□□□ 0.49
CCDC88B-202ENST00000356786 SDSLQ96GA7 329 aa18.11■□□□□ 0.49
CCDC88B-202ENST00000356786 C10orf90Q96M02 699 aa18.11■□□□□ 0.49
CCDC88B-202ENST00000356786 C1QTNF3Q9BXJ4 246 aa18.11■□□□□ 0.49
CCDC88B-202ENST00000356786 SLIRPQ9GZT3 109 aaKnown RBP18.11■□□□□ 0.49
CCDC88B-202ENST00000356786 SLC6A20Q9NP91 592 aa18.11■□□□□ 0.49
CCDC88B-202ENST00000356786 FBXO7Q9Y3I1 522 aa18.11■□□□□ 0.49
CCDC88B-202ENST00000356786 GABARAPH6UMI1 98 aa18.1■□□□□ 0.49
CCDC88B-202ENST00000356786 SYNGR4O95473 234 aa18.1■□□□□ 0.49
CCDC88B-202ENST00000356786 LDAHQ9H6V9 325 aa18.1■□□□□ 0.49
CCDC88B-202ENST00000356786 GCM1Q9NP62 436 aa18.1■□□□□ 0.49
CCDC88B-202ENST00000356786 SCGB1D1O95968 90 aa18.1■□□□□ 0.49
CCDC88B-202ENST00000356786 TAS2R46P59540 309 aa18.1■□□□□ 0.49
CCDC88B-202ENST00000356786 HTD2P86397 168 aa18.1■□□□□ 0.49
CCDC88B-202ENST00000356786 PRR18Q8N4B5 295 aa18.1■□□□□ 0.49
CCDC88B-202ENST00000356786 HSD17B11Q8NBQ5 300 aa18.1■□□□□ 0.49
CCDC88B-202ENST00000356786 LPAR4Q99677 370 aa18.1■□□□□ 0.49
CCDC88B-202ENST00000356786 ASCC3Q8N3C0 2202 aaKnown RBP18.1■□□□□ 0.49
CCDC88B-202ENST00000356786 HIDE1A8MVS5 230 aa18.1■□□□□ 0.49
CCDC88B-202ENST00000356786 ZNF593O00488 134 aaPredicted RBP18.1■□□□□ 0.49
CCDC88B-202ENST00000356786 PEX12O00623 359 aa18.1■□□□□ 0.49
CCDC88B-202ENST00000356786 ADAM12O43184 909 aa18.1■□□□□ 0.49
CCDC88B-202ENST00000356786 RAC2P15153 192 aa18.1■□□□□ 0.49
CCDC88B-202ENST00000356786 CPEP16870 476 aa18.1■□□□□ 0.49
CCDC88B-202ENST00000356786 CLDN20P56880 219 aa18.1■□□□□ 0.49
CCDC88B-202ENST00000356786 PFN3P60673 137 aa18.1■□□□□ 0.49
CCDC88B-202ENST00000356786 RPS18P62269 152 aaKnown RBP18.1■□□□□ 0.49
CCDC88B-202ENST00000356786 CDK3Q00526 305 aa18.1■□□□□ 0.49
CCDC88B-202ENST00000356786 CD300CQ08708 224 aa18.1■□□□□ 0.49
CCDC88B-202ENST00000356786 KIR2DS3Q14952 304 aa18.1■□□□□ 0.49
CCDC88B-202ENST00000356786 IL17RCQ8NAC3 791 aa18.1■□□□□ 0.49
CCDC88B-202ENST00000356786 SLC41A2Q96JW4 573 aa18.1■□□□□ 0.49
CCDC88B-202ENST00000356786 ZNF681Q96N22 645 aa18.1■□□□□ 0.49
CCDC88B-202ENST00000356786 CLDND1Q9NY35 253 aa18.1■□□□□ 0.49
CCDC88B-202ENST00000356786 CHST2Q9Y4C5 530 aa18.1■□□□□ 0.49
CCDC88B-202ENST00000356786 A0A087WZY1 265 aa18.1■□□□□ 0.49
CCDC88B-202ENST00000356786 A8MXE2 369 aa18.1■□□□□ 0.49
CCDC88B-202ENST00000356786 SPI1P17947 270 aa18.1■□□□□ 0.49
CCDC88B-202ENST00000356786 YOD1Q5VVQ6 348 aaPredicted RBP18.1■□□□□ 0.49
CCDC88B-202ENST00000356786 FAM3DQ96BQ1 224 aa18.1■□□□□ 0.49
CCDC88B-202ENST00000356786 ZNF768Q9H5H4 540 aaKnown RBP18.1■□□□□ 0.49
CCDC88B-202ENST00000356786 ADAM18Q9Y3Q7 739 aa18.1■□□□□ 0.49
CCDC88B-202ENST00000356786 AGAP14A8MT82 685 aa18.09■□□□□ 0.49
CCDC88B-202ENST00000356786 DHPSP49366 369 aaPredicted RBP18.09■□□□□ 0.49
CCDC88B-202ENST00000356786 FAM71E1Q6IPT2 247 aa18.09■□□□□ 0.49
CCDC88B-202ENST00000356786 PLPP5Q8NEB5 264 aa18.09■□□□□ 0.49
CCDC88B-202ENST00000356786 YIPF5Q969M3 257 aa18.09■□□□□ 0.49
CCDC88B-202ENST00000356786 AMDHD1Q96NU7 426 aa18.09■□□□□ 0.49
CCDC88B-202ENST00000356786 ENTPD2Q9Y5L3 495 aa18.09■□□□□ 0.49
CCDC88B-202ENST00000356786 EFCAB7A8K855 629 aa18.09■□□□□ 0.49
CCDC88B-202ENST00000356786 CCSO14618 274 aa18.09■□□□□ 0.49
CCDC88B-202ENST00000356786 TEKQ02763 1124 aa18.09■□□□□ 0.49
CCDC88B-202ENST00000356786 HNRNPA1L2Q32P51 320 aaKnown RBP18.09■□□□□ 0.49
CCDC88B-202ENST00000356786 FAM111BQ6SJ93 734 aa18.09■□□□□ 0.49
CCDC88B-202ENST00000356786 GLCCI1Q86VQ1 547 aa18.09■□□□□ 0.49
CCDC88B-202ENST00000356786 TM4SF18Q96CE8 201 aa18.09■□□□□ 0.49
CCDC88B-202ENST00000356786 RAB3CQ96E17 227 aa18.09■□□□□ 0.49
CCDC88B-202ENST00000356786 SLCO5A1Q9H2Y9 848 aa18.09■□□□□ 0.49
CCDC88B-202ENST00000356786 SHOXO15266 292 aa18.09■□□□□ 0.49
CCDC88B-202ENST00000356786 GPR137BO60478 399 aa18.09■□□□□ 0.49
CCDC88B-202ENST00000356786 B3GALNT1O75752 331 aa18.09■□□□□ 0.49
CCDC88B-202ENST00000356786 TXNDC12O95881 172 aa18.09■□□□□ 0.49
CCDC88B-202ENST00000356786 HNRNPA1P09651 372 aaKnown RBP eCLIP18.09■□□□□ 0.49
CCDC88B-202ENST00000356786 HLA-FP30511 346 aa18.09■□□□□ 0.49
CCDC88B-202ENST00000356786 SERPINF1P36955 418 aa18.09■□□□□ 0.49
CCDC88B-202ENST00000356786 KIAA0141Q14154 515 aaPredicted RBP18.09■□□□□ 0.49
CCDC88B-202ENST00000356786 LTB4RQ15722 352 aa18.09■□□□□ 0.49
CCDC88B-202ENST00000356786 TMEM59Q9BXS4 323 aa18.09■□□□□ 0.49
CCDC88B-202ENST00000356786 MS4A8Q9BY19 250 aa18.09■□□□□ 0.49
CCDC88B-202ENST00000356786 C11orf49Q9H6J7 331 aa18.09■□□□□ 0.49
CCDC88B-202ENST00000356786 TMEM189-UBE2V1I3L0A0 370 aa18.09■□□□□ 0.49
CCDC88B-202ENST00000356786 SOCS7O14512 581 aa18.09■□□□□ 0.49
CCDC88B-202ENST00000356786 KIR2DL3P43628 341 aa18.09■□□□□ 0.49
CCDC88B-202ENST00000356786 MRPS34P82930 218 aaKnown RBP18.09■□□□□ 0.49
CCDC88B-202ENST00000356786 IAH1Q2TAA2 248 aaPredicted RBP18.09■□□□□ 0.49
CCDC88B-202ENST00000356786 ACTBL2Q562R1 376 aa18.09■□□□□ 0.49
CCDC88B-202ENST00000356786 CPXM2Q8N436 756 aa18.09■□□□□ 0.49
CCDC88B-202ENST00000356786 KLF15Q9UIH9 416 aa18.09■□□□□ 0.49
CCDC88B-202ENST00000356786 CBLCQ9ULV8 474 aa18.09■□□□□ 0.49
CCDC88B-202ENST00000356786 MOKQ9UQ07 419 aa18.09■□□□□ 0.49
CCDC88B-202ENST00000356786 A0A1B0GWA3 101 aa18.08■□□□□ 0.49
CCDC88B-202ENST00000356786 TARM1B6A8C7 271 aa18.08■□□□□ 0.49
CCDC88B-202ENST00000356786 CPT2P23786 658 aa18.08■□□□□ 0.49
CCDC88B-202ENST00000356786 CCSMST1Q4G0I0 132 aa18.08■□□□□ 0.49
CCDC88B-202ENST00000356786 RELL2Q8NC24 303 aaPredicted RBP18.08■□□□□ 0.49
CCDC88B-202ENST00000356786 MR1Q95460 341 aa18.08■□□□□ 0.49
CCDC88B-202ENST00000356786 OR5B2Q96R09 309 aa18.08■□□□□ 0.49
CCDC88B-202ENST00000356786 UBQLN4Q9NRR5 601 aa18.08■□□□□ 0.49
CCDC88B-202ENST00000356786 A0A087WUU8 490 aa18.08■□□□□ 0.48
CCDC88B-202ENST00000356786 PRKRAO75569 313 aaKnown RBP18.08■□□□□ 0.48
CCDC88B-202ENST00000356786 MPEG1Q2M385 716 aa18.08■□□□□ 0.48
CCDC88B-202ENST00000356786 ZNF296Q8WUU4 475 aaPredicted RBP18.08■□□□□ 0.48
CCDC88B-202ENST00000356786 RBMXL1Q96E39 390 aaKnown RBP18.08■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 53.5 ms