RNA–Protein interactions for RNA: ENST00000354504.7

VPS54-202, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS54, Length 3,594 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-202ENST00000354504 OR51Q1Q8NH59 317 aa2.07□□□□□ -2.08
VPS54-202ENST00000354504 DOK4Q8TEW6 326 aa2.07□□□□□ -2.08
VPS54-202ENST00000354504 RLN3Q8WXF3 142 aa2.07□□□□□ -2.08
VPS54-202ENST00000354504 EXOSC8Q96B26 276 aaKnown RBP2.07□□□□□ -2.08
VPS54-202ENST00000354504 ZBED6CLQ96FA7 236 aaPredicted RBP2.07□□□□□ -2.08
VPS54-202ENST00000354504 SIPA1Q96FS4 1042 aa2.07□□□□□ -2.08
VPS54-202ENST00000354504 ZC3HAV1LQ96H79 300 aaKnown RBP2.07□□□□□ -2.08
VPS54-202ENST00000354504 C20orf173Q96LM9 149 aa2.07□□□□□ -2.08
VPS54-202ENST00000354504 C1orf147Q96MC9 270 aaPredicted RBP2.07□□□□□ -2.08
VPS54-202ENST00000354504 AMELYQ99218 206 aa2.07□□□□□ -2.08
VPS54-202ENST00000354504 TSC22D3Q99576 134 aa2.07□□□□□ -2.08
VPS54-202ENST00000354504 ITPAQ9BY32 194 aa2.07□□□□□ -2.08
VPS54-202ENST00000354504 UBQLN3Q9H347 655 aa2.07□□□□□ -2.08
VPS54-202ENST00000354504 CMC2Q9NRP2 79 aa2.07□□□□□ -2.08
VPS54-202ENST00000354504 PHPT1Q9NRX4 125 aaPredicted RBP2.07□□□□□ -2.08
VPS54-202ENST00000354504 KRT84Q9NSB2 600 aa2.07□□□□□ -2.08
VPS54-202ENST00000354504 MRPL22Q9NWU5 206 aaKnown RBP2.07□□□□□ -2.08
VPS54-202ENST00000354504 TXNL4BQ9NX01 149 aaKnown RBP2.07□□□□□ -2.08
VPS54-202ENST00000354504 THEGQ9P2T0 379 aa2.07□□□□□ -2.08
VPS54-202ENST00000354504 LRIT1Q9P2V4 623 aa2.07□□□□□ -2.08
VPS54-202ENST00000354504 P2RX2Q9UBL9 471 aa2.07□□□□□ -2.08
VPS54-202ENST00000354504 DKK2Q9UBU2 259 aa2.07□□□□□ -2.08
VPS54-202ENST00000354504 MGAT4BQ9UQ53 548 aa2.07□□□□□ -2.08
VPS54-202ENST00000354504 SLC6A5Q9Y345 797 aa2.07□□□□□ -2.08
VPS54-202ENST00000354504 CAB39Q9Y376 341 aaPredicted RBP2.07□□□□□ -2.08
VPS54-202ENST00000354504 RBMX2Q9Y388 322 aaKnown RBP2.07□□□□□ -2.08
VPS54-202ENST00000354504 SAMHD1Q9Y3Z3 626 aaKnown RBP2.07□□□□□ -2.08
VPS54-202ENST00000354504 HEBP2Q9Y5Z4 205 aa2.07□□□□□ -2.08
VPS54-202ENST00000354504 COLEC10Q9Y6Z7 277 aa2.07□□□□□ -2.08
VPS54-202ENST00000354504 TET2Q6N021 2002 aaPredicted RBP2.07□□□□□ -2.08
VPS54-202ENST00000354504 NBASA2RRP1 2371 aa2.07□□□□□ -2.08
VPS54-202ENST00000354504 TBC1D3KA0A087X1G2 549 aa2.07□□□□□ -2.08
VPS54-202ENST00000354504 TRBV5-7A0A0A0MS05 114 aa2.07□□□□□ -2.08
VPS54-202ENST00000354504 IGLV1-36A0A0B4J1U3 117 aa2.07□□□□□ -2.08
VPS54-202ENST00000354504 TRBV5-5A0A0J9YX44 114 aa2.07□□□□□ -2.08
VPS54-202ENST00000354504 LOC101059948A0A1B0GTJ6 334 aa2.07□□□□□ -2.08
VPS54-202ENST00000354504 CIB4A0PJX0 185 aa2.07□□□□□ -2.08
VPS54-202ENST00000354504 FUOMA2VDF0 154 aa2.07□□□□□ -2.08
VPS54-202ENST00000354504 OR6C68A6NDL8 312 aa2.07□□□□□ -2.08
VPS54-202ENST00000354504 TBC1D3FA6NER0 549 aaPredicted RBP2.07□□□□□ -2.08
VPS54-202ENST00000354504 TMEM221A6NGB7 291 aa2.07□□□□□ -2.08
VPS54-202ENST00000354504 FAM90A20PA6NIJ5 464 aa2.07□□□□□ -2.08
VPS54-202ENST00000354504 MARCH11A6NNE9 402 aa2.07□□□□□ -2.08
VPS54-202ENST00000354504 MCIDASD6RGH6 385 aa2.07□□□□□ -2.08
VPS54-202ENST00000354504 LRRN3E7EW58 273 aa2.07□□□□□ -2.08
VPS54-202ENST00000354504 MS4A18H0YCH9 400 aa2.07□□□□□ -2.08
VPS54-202ENST00000354504 TLR4O00206 839 aa2.07□□□□□ -2.08
VPS54-202ENST00000354504 ZSCAN9O15535 394 aaPredicted RBP2.07□□□□□ -2.08
VPS54-202ENST00000354504 ZNF749O43361 778 aa2.07□□□□□ -2.08
VPS54-202ENST00000354504 CHST10O43529 356 aa2.07□□□□□ -2.08
VPS54-202ENST00000354504 SS18L1O75177 396 aaPredicted RBP2.07□□□□□ -2.08
VPS54-202ENST00000354504 RDH16O75452 317 aa2.07□□□□□ -2.08
VPS54-202ENST00000354504 MYO1DO94832 1006 aa2.07□□□□□ -2.08
VPS54-202ENST00000354504 SNX4O95219 450 aa2.07□□□□□ -2.08
VPS54-202ENST00000354504 GADD45GO95257 159 aa2.07□□□□□ -2.08
VPS54-202ENST00000354504 SOX14O95416 240 aa2.07□□□□□ -2.08
VPS54-202ENST00000354504 SLC35G4P0C7Q5 338 aa2.07□□□□□ -2.08
VPS54-202ENST00000354504 GKN3PP0CG01 181 aa2.07□□□□□ -2.08
VPS54-202ENST00000354504 THEGLP0DJG4 465 aa2.07□□□□□ -2.08
VPS54-202ENST00000354504 GNSP15586 552 aa2.07□□□□□ -2.08
VPS54-202ENST00000354504 IGFBP3P17936 291 aaPredicted RBP2.07□□□□□ -2.08
VPS54-202ENST00000354504 ADRA2CP18825 462 aa2.07□□□□□ -2.08
VPS54-202ENST00000354504 CSTF2P33240 577 aaKnown RBP eCLIP2.07□□□□□ -2.08
VPS54-202ENST00000354504 RPL3P39023 403 aaKnown RBP2.07□□□□□ -2.08
VPS54-202ENST00000354504 NNMTP40261 264 aa2.07□□□□□ -2.08
VPS54-202ENST00000354504 PCYT1AP49585 367 aa2.07□□□□□ -2.08
VPS54-202ENST00000354504 BTN3A2P78410 334 aa2.07□□□□□ -2.08
VPS54-202ENST00000354504 POU6F2P78424 691 aaPredicted RBP2.07□□□□□ -2.08
VPS54-202ENST00000354504 H3F3AP84243 136 aa2.07□□□□□ -2.08
VPS54-202ENST00000354504 BDH1Q02338 343 aa2.07□□□□□ -2.08
VPS54-202ENST00000354504 COX10Q12887 443 aa2.07□□□□□ -2.08
VPS54-202ENST00000354504 TNK1Q13470 666 aa2.07□□□□□ -2.08
VPS54-202ENST00000354504 DDX39BQ13838 428 aaKnown RBP2.07□□□□□ -2.08
VPS54-202ENST00000354504 LASP1Q14847 261 aaKnown RBP2.07□□□□□ -2.08
VPS54-202ENST00000354504 MS4A18Q3C1V0 323 aa2.07□□□□□ -2.08
VPS54-202ENST00000354504 FBXO43Q4G163 708 aa2.07□□□□□ -2.08
VPS54-202ENST00000354504 TEX30Q5JUR7 227 aa2.07□□□□□ -2.08
VPS54-202ENST00000354504 WDR45BQ5MNZ6 344 aa2.07□□□□□ -2.08
VPS54-202ENST00000354504 ARHGAP40Q5TG30 622 aa2.07□□□□□ -2.08
VPS54-202ENST00000354504 OR2G6Q5TZ20 316 aa2.07□□□□□ -2.08
VPS54-202ENST00000354504 MEDAGQ5VYS4 303 aa2.07□□□□□ -2.08
VPS54-202ENST00000354504 TBC1D3GQ6DHY5 549 aa2.07□□□□□ -2.08
VPS54-202ENST00000354504 LAMTOR1Q6IAA8 161 aa2.07□□□□□ -2.08
VPS54-202ENST00000354504 FAM199XQ6PEV8 388 aaPredicted RBP2.07□□□□□ -2.08
VPS54-202ENST00000354504 ZNF367Q7RTV3 350 aa2.07□□□□□ -2.08
VPS54-202ENST00000354504 LRRTM1Q86UE6 522 aa2.07□□□□□ -2.08
VPS54-202ENST00000354504 RTN4RL2Q86UN3 420 aa2.07□□□□□ -2.08
VPS54-202ENST00000354504 WDR5BQ86VZ2 330 aa2.07□□□□□ -2.08
VPS54-202ENST00000354504 TEX19Q8NA77 164 aa2.07□□□□□ -2.08
VPS54-202ENST00000354504 PLPP5Q8NEB5 264 aa2.07□□□□□ -2.08
VPS54-202ENST00000354504 ELP5Q8TE02 316 aa2.07□□□□□ -2.08
VPS54-202ENST00000354504 HTRA1Q92743 480 aa2.07□□□□□ -2.08
VPS54-202ENST00000354504 ZDHHC12Q96GR4 267 aa2.07□□□□□ -2.08
VPS54-202ENST00000354504 SLC35G5Q96KT7 338 aa2.07□□□□□ -2.08
VPS54-202ENST00000354504 MRPL13Q9BYD1 178 aaKnown RBP2.07□□□□□ -2.08
VPS54-202ENST00000354504 LRRN3Q9H3W5 708 aa2.07□□□□□ -2.08
VPS54-202ENST00000354504 SIAEQ9HAT2 523 aa2.07□□□□□ -2.08
VPS54-202ENST00000354504 IMP3Q9NV31 184 aaKnown RBP2.07□□□□□ -2.08
VPS54-202ENST00000354504 ATAD3AQ9NVI7 634 aa2.07□□□□□ -2.08
VPS54-202ENST00000354504 KIF17Q9P2E2 1029 aa2.07□□□□□ -2.08
Retrieved 100 of 20,778 RNA–protein pairs in 52.1 ms