RNA–Protein interactions for RNA: ENST00000334389.5

LINC00643-201, long intergenic non-protein coding RNA 643, humanhuman

TSL 2 BASIC

Gene LINC00643, Length 3,247 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-201ENST00000334389 SHOXO15266 292 aa1.22□□□□□ -2.21
LINC00643-201ENST00000334389 CD3EAPO15446 510 aaKnown RBP1.22□□□□□ -2.21
LINC00643-201ENST00000334389 GMDSO60547 372 aa1.22□□□□□ -2.21
LINC00643-201ENST00000334389 GATBO75879 557 aaKnown RBP1.22□□□□□ -2.21
LINC00643-201ENST00000334389 SLU7O95391 586 aaKnown RBP1.22□□□□□ -2.21
LINC00643-201ENST00000334389 HLA-DQB2P05538 268 aa1.22□□□□□ -2.21
LINC00643-201ENST00000334389 KRT18P05783 430 aaKnown RBP1.22□□□□□ -2.21
LINC00643-201ENST00000334389 OR12D1P0DN82 309 aa1.22□□□□□ -2.21
LINC00643-201ENST00000334389 PRPS2P11908 318 aa1.22□□□□□ -2.21
LINC00643-201ENST00000334389 UCHL3P15374 230 aa1.22□□□□□ -2.21
LINC00643-201ENST00000334389 CALB2P22676 271 aa1.22□□□□□ -2.21
LINC00643-201ENST00000334389 SLC6A2P23975 617 aa1.22□□□□□ -2.21
LINC00643-201ENST00000334389 SLC6A6P31641 620 aa1.22□□□□□ -2.21
LINC00643-201ENST00000334389 KRT20P35900 424 aa1.22□□□□□ -2.21
LINC00643-201ENST00000334389 PIGAP37287 484 aa1.22□□□□□ -2.21
LINC00643-201ENST00000334389 GLP1RP43220 463 aa1.22□□□□□ -2.21
LINC00643-201ENST00000334389 MAGEA12P43365 314 aa1.22□□□□□ -2.21
LINC00643-201ENST00000334389 SERPINB4P48594 390 aa1.22□□□□□ -2.21
LINC00643-201ENST00000334389 MRPS25P82663 173 aaKnown RBP1.22□□□□□ -2.21
LINC00643-201ENST00000334389 CAV1Q03135 178 aa1.22□□□□□ -2.21
LINC00643-201ENST00000334389 CD69Q07108 199 aa1.22□□□□□ -2.21
LINC00643-201ENST00000334389 DPYSL3Q14195 570 aa1.22□□□□□ -2.21
LINC00643-201ENST00000334389 RAB35Q15286 201 aa1.22□□□□□ -2.21
LINC00643-201ENST00000334389 SLC18A3Q16572 532 aa1.22□□□□□ -2.21
LINC00643-201ENST00000334389 EXOC3L4Q17RC7 722 aa1.22□□□□□ -2.21
LINC00643-201ENST00000334389 TMEM201Q5SNT2 666 aa1.22□□□□□ -2.21
LINC00643-201ENST00000334389 C3orf33Q6P1S2 294 aa1.22□□□□□ -2.21
LINC00643-201ENST00000334389 ZDHHC24Q6UX98 284 aa1.22□□□□□ -2.21
LINC00643-201ENST00000334389 YRDCQ86U90 279 aaKnown RBP1.22□□□□□ -2.21
LINC00643-201ENST00000334389 NFE4Q86UQ8 179 aa1.22□□□□□ -2.21
LINC00643-201ENST00000334389 CCDC71Q8IV32 467 aaPredicted RBP1.22□□□□□ -2.21
LINC00643-201ENST00000334389 VSTM4Q8IW00 320 aa1.22□□□□□ -2.21
LINC00643-201ENST00000334389 CENPLQ8N0S6 344 aaPredicted RBP1.22□□□□□ -2.21
LINC00643-201ENST00000334389 NPWQ8N729 165 aa1.22□□□□□ -2.21
LINC00643-201ENST00000334389 OR52M1Q8NGK5 317 aa1.22□□□□□ -2.21
LINC00643-201ENST00000334389 OR5D13Q8NGL4 314 aa1.22□□□□□ -2.21
LINC00643-201ENST00000334389 OR2T11Q8NH01 316 aa1.22□□□□□ -2.21
LINC00643-201ENST00000334389 CLHC1Q8NHS4 586 aa1.22□□□□□ -2.21
LINC00643-201ENST00000334389 RASSF5Q8WWW0 418 aa1.22□□□□□ -2.21
LINC00643-201ENST00000334389 NELFBQ8WX92 580 aa1.22□□□□□ -2.21
LINC00643-201ENST00000334389 EDEM1Q92611 657 aa1.22□□□□□ -2.21
LINC00643-201ENST00000334389 NMD3Q96D46 503 aaKnown RBP1.22□□□□□ -2.21
LINC00643-201ENST00000334389 RBM41Q96IZ5 413 aaKnown RBP1.22□□□□□ -2.21
LINC00643-201ENST00000334389 GAL3ST4Q96RP7 486 aa1.22□□□□□ -2.21
LINC00643-201ENST00000334389 ZNF607Q96SK3 696 aa1.22□□□□□ -2.21
LINC00643-201ENST00000334389 COPS4Q9BT78 406 aa1.22□□□□□ -2.21
LINC00643-201ENST00000334389 ALG12Q9BV10 488 aa1.22□□□□□ -2.21
LINC00643-201ENST00000334389 NTMT1Q9BV86 223 aa1.22□□□□□ -2.21
LINC00643-201ENST00000334389 UCK2Q9BZX2 261 aa1.22□□□□□ -2.21
LINC00643-201ENST00000334389 VPS11Q9H270 941 aa1.22□□□□□ -2.21
LINC00643-201ENST00000334389 SP140LQ9H930 580 aa1.22□□□□□ -2.21
LINC00643-201ENST00000334389 VIPAS39Q9H9C1 493 aa1.22□□□□□ -2.21
LINC00643-201ENST00000334389 AKIRIN1Q9H9L7 192 aaPredicted RBP1.22□□□□□ -2.21
LINC00643-201ENST00000334389 PARVBQ9HBI1 364 aa1.22□□□□□ -2.21
LINC00643-201ENST00000334389 SMPD3Q9NY59 655 aaPredicted RBP1.22□□□□□ -2.21
LINC00643-201ENST00000334389 V9GYQ6 96 aa1.22□□□□□ -2.21
LINC00643-201ENST00000334389 CCDC88CQ9P219 2028 aa1.21□□□□□ -2.21
LINC00643-201ENST00000334389 NPHP3-ACAD11A0A0J9YXS1 232 aa1.21□□□□□ -2.22
LINC00643-201ENST00000334389 A6NHS1 94 aa1.21□□□□□ -2.22
LINC00643-201ENST00000334389 GOLGA6L22H0YM25 854 aa1.21□□□□□ -2.22
LINC00643-201ENST00000334389 TMEM178BH3BS89 294 aa1.21□□□□□ -2.22
LINC00643-201ENST00000334389 hCG_2039718K7EN88 272 aa1.21□□□□□ -2.22
LINC00643-201ENST00000334389 STX16O14662 325 aa1.21□□□□□ -2.22
LINC00643-201ENST00000334389 POLR2DO15514 142 aaKnown RBP1.21□□□□□ -2.22
LINC00643-201ENST00000334389 P2RX6O15547 441 aa1.21□□□□□ -2.22
LINC00643-201ENST00000334389 LCMT2O60294 686 aaKnown RBP1.21□□□□□ -2.22
LINC00643-201ENST00000334389 TPPPO94811 219 aa1.21□□□□□ -2.22
LINC00643-201ENST00000334389 UBOX5O94941 541 aa1.21□□□□□ -2.22
LINC00643-201ENST00000334389 SPDEFO95238 335 aa1.21□□□□□ -2.22
LINC00643-201ENST00000334389 CLDN7O95471 211 aa1.21□□□□□ -2.22
LINC00643-201ENST00000334389 F10P00742 488 aa1.21□□□□□ -2.22
LINC00643-201ENST00000334389 MT-ATP6P00846 226 aa1.21□□□□□ -2.22
LINC00643-201ENST00000334389 IGHG2P01859 326 aa1.21□□□□□ -2.22
LINC00643-201ENST00000334389 KRT14P02533 472 aa1.21□□□□□ -2.22
LINC00643-201ENST00000334389 CST2P09228 141 aa1.21□□□□□ -2.22
LINC00643-201ENST00000334389 H2AFZP0C0S5 128 aa1.21□□□□□ -2.22
LINC00643-201ENST00000334389 UBL4AP11441 157 aa1.21□□□□□ -2.22
LINC00643-201ENST00000334389 PORP16435 677 aaPredicted RBP1.21□□□□□ -2.22
LINC00643-201ENST00000334389 HK1P19367 917 aa1.21□□□□□ -2.22
LINC00643-201ENST00000334389 MDKP21741 143 aaPredicted RBP1.21□□□□□ -2.22
LINC00643-201ENST00000334389 IL32P24001 234 aa1.21□□□□□ -2.22
LINC00643-201ENST00000334389 STIP1P31948 543 aaKnown RBP1.21□□□□□ -2.22
LINC00643-201ENST00000334389 RAD52P43351 418 aa1.21□□□□□ -2.22
LINC00643-201ENST00000334389 PRIM2P49643 509 aa1.21□□□□□ -2.22
LINC00643-201ENST00000334389 P2RX1P51575 399 aa1.21□□□□□ -2.22
LINC00643-201ENST00000334389 BMXP51813 675 aa1.21□□□□□ -2.22
LINC00643-201ENST00000334389 ATP6V0D1P61421 351 aa1.21□□□□□ -2.22
LINC00643-201ENST00000334389 ALKBH1Q13686 389 aaKnown RBP1.21□□□□□ -2.22
LINC00643-201ENST00000334389 MELKQ14680 651 aa1.21□□□□□ -2.22
LINC00643-201ENST00000334389 NOMO1Q15155 1222 aa1.21□□□□□ -2.22
LINC00643-201ENST00000334389 IMPG1Q17R60 797 aa1.21□□□□□ -2.22
LINC00643-201ENST00000334389 SLC35F1Q5T1Q4 408 aa1.21□□□□□ -2.22
LINC00643-201ENST00000334389 ATAD3CQ5T2N8 411 aa1.21□□□□□ -2.22
LINC00643-201ENST00000334389 FAM162BQ5T6X4 162 aa1.21□□□□□ -2.22
LINC00643-201ENST00000334389 ZNF57Q68EA5 555 aaPredicted RBP1.21□□□□□ -2.22
LINC00643-201ENST00000334389 THOC7Q6I9Y2 204 aaKnown RBP1.21□□□□□ -2.22
LINC00643-201ENST00000334389 SPINK14Q6IE38 97 aa1.21□□□□□ -2.22
LINC00643-201ENST00000334389 CAPN13Q6MZZ7 669 aaPredicted RBP1.21□□□□□ -2.22
LINC00643-201ENST00000334389 MRNIPQ6NTE8 343 aa1.21□□□□□ -2.22
LINC00643-201ENST00000334389 C1orf94Q6P1W5 598 aa1.21□□□□□ -2.22
Retrieved 100 of 20,778 RNA–protein pairs in 43 ms