RNA–Protein interactions for RNA: ENST00000314759.5

SKA3-202, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SKA3, Length 2,919 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-202ENST00000314759 SLC38A3Q99624 504 aa12.3□□□□□ -0.44
SKA3-202ENST00000314759 HPF1Q9NWY4 346 aa12.3□□□□□ -0.44
SKA3-202ENST00000314759 DNAJB12Q9NXW2 375 aaKnown RBP12.3□□□□□ -0.44
SKA3-202ENST00000314759 D6RAR5 112 aa12.29□□□□□ -0.44
SKA3-202ENST00000314759 PYCARD-AS1I3L0S3 204 aa12.29□□□□□ -0.44
SKA3-202ENST00000314759 ACOT7O00154 380 aa12.29□□□□□ -0.44
SKA3-202ENST00000314759 SDC3O75056 442 aa12.29□□□□□ -0.44
SKA3-202ENST00000314759 SPDEFO95238 335 aa12.29□□□□□ -0.44
SKA3-202ENST00000314759 WDPCPO95876 746 aa12.29□□□□□ -0.44
SKA3-202ENST00000314759 TMIGD3P0DMS9 266 aaPredicted RBP12.29□□□□□ -0.44
SKA3-202ENST00000314759 VSIG10L2P0DP72 767 aa12.29□□□□□ -0.44
SKA3-202ENST00000314759 SPI1P17947 270 aa12.29□□□□□ -0.44
SKA3-202ENST00000314759 DEFA5Q01523 94 aa12.29□□□□□ -0.44
SKA3-202ENST00000314759 VITQ6UXI7 678 aa12.29□□□□□ -0.44
SKA3-202ENST00000314759 GSG1LQ6UXU4 331 aa12.29□□□□□ -0.44
SKA3-202ENST00000314759 LINC00114Q6XXX2 140 aa12.29□□□□□ -0.44
SKA3-202ENST00000314759 HSD17B13Q7Z5P4 300 aaPredicted RBP12.29□□□□□ -0.44
SKA3-202ENST00000314759 SLC43A2Q8N370 569 aa12.29□□□□□ -0.44
SKA3-202ENST00000314759 CLRN3Q8NCR9 226 aa12.29□□□□□ -0.44
SKA3-202ENST00000314759 CAPNS2Q96L46 248 aa12.29□□□□□ -0.44
SKA3-202ENST00000314759 LRFN5Q96NI6 719 aa12.29□□□□□ -0.44
SKA3-202ENST00000314759 PELOQ9BRX2 385 aaKnown RBP12.29□□□□□ -0.44
SKA3-202ENST00000314759 FGF22Q9HCT0 170 aa12.29□□□□□ -0.44
SKA3-202ENST00000314759 A0A1B0GVT2 93 aa12.29□□□□□ -0.44
SKA3-202ENST00000314759 FAM171A2A8MVW0 826 aa12.29□□□□□ -0.44
SKA3-202ENST00000314759 IGFALSP35858 605 aa12.29□□□□□ -0.44
SKA3-202ENST00000314759 RPL4P36578 427 aaKnown RBP12.29□□□□□ -0.44
SKA3-202ENST00000314759 ART1P52961 327 aa12.29□□□□□ -0.44
SKA3-202ENST00000314759 TAS2R20P59543 309 aa12.29□□□□□ -0.44
SKA3-202ENST00000314759 MRPS10P82664 201 aaKnown RBP12.29□□□□□ -0.44
SKA3-202ENST00000314759 HTRA4P83105 476 aaPredicted RBP12.29□□□□□ -0.44
SKA3-202ENST00000314759 LGALS3BPQ08380 585 aa12.29□□□□□ -0.44
SKA3-202ENST00000314759 SGCGQ13326 291 aa12.29□□□□□ -0.44
SKA3-202ENST00000314759 GK2Q14410 553 aaPredicted RBP12.29□□□□□ -0.44
SKA3-202ENST00000314759 B3GNTL1Q67FW5 361 aaPredicted RBP12.29□□□□□ -0.44
SKA3-202ENST00000314759 ZCCHC12Q6PEW1 402 aa12.29□□□□□ -0.44
SKA3-202ENST00000314759 STAC2Q6ZMT1 411 aa12.29□□□□□ -0.44
SKA3-202ENST00000314759 PDZD9Q8IXQ8 264 aa12.29□□□□□ -0.44
SKA3-202ENST00000314759 OR5T3Q8NGG3 340 aa12.29□□□□□ -0.44
SKA3-202ENST00000314759 LILRB1Q8NHL6 650 aaPredicted RBP12.29□□□□□ -0.44
SKA3-202ENST00000314759 FLVCR1-AS1Q8TAF5 88 aa12.29□□□□□ -0.44
SKA3-202ENST00000314759 ZDHHC1Q8WTX9 485 aa12.29□□□□□ -0.44
SKA3-202ENST00000314759 ZNF296Q8WUU4 475 aaPredicted RBP12.29□□□□□ -0.44
SKA3-202ENST00000314759 GINS4Q9BRT9 223 aa12.29□□□□□ -0.44
SKA3-202ENST00000314759 GMEB2Q9UKD1 530 aa12.29□□□□□ -0.44
SKA3-202ENST00000314759 TRBV23OR9-2A0A075B6M9 112 aa12.28□□□□□ -0.44
SKA3-202ENST00000314759 KCNJ13O60928 360 aa12.28□□□□□ -0.44
SKA3-202ENST00000314759 AK1P00568 194 aa12.28□□□□□ -0.44
SKA3-202ENST00000314759 RLN2P04090 185 aa12.28□□□□□ -0.44
SKA3-202ENST00000314759 CALCBP10092 127 aa12.28□□□□□ -0.44
SKA3-202ENST00000314759 PPP3CBP16298 524 aa12.28□□□□□ -0.44
SKA3-202ENST00000314759 ADRA2CP18825 462 aa12.28□□□□□ -0.44
SKA3-202ENST00000314759 MST1P26927 711 aa12.28□□□□□ -0.44
SKA3-202ENST00000314759 ADH7P40394 386 aa12.28□□□□□ -0.44
SKA3-202ENST00000314759 PLA2G7Q13093 441 aa12.28□□□□□ -0.44
SKA3-202ENST00000314759 IL10RAQ13651 578 aa12.28□□□□□ -0.44
SKA3-202ENST00000314759 ZNF684Q5T5D7 378 aa12.28□□□□□ -0.44
SKA3-202ENST00000314759 DCAF12L2Q5VW00 463 aa12.28□□□□□ -0.44
SKA3-202ENST00000314759 KIRREL2Q6UWL6 708 aa12.28□□□□□ -0.44
SKA3-202ENST00000314759 SPPL3Q8TCT6 385 aa12.28□□□□□ -0.44
SKA3-202ENST00000314759 SP7Q8TDD2 431 aaPredicted RBP12.28□□□□□ -0.44
SKA3-202ENST00000314759 MIB2Q96AX9 1013 aa12.28□□□□□ -0.44
SKA3-202ENST00000314759 LRRC46Q96FV0 321 aa12.28□□□□□ -0.44
SKA3-202ENST00000314759 TRIM2Q9C040 744 aa12.28□□□□□ -0.44
SKA3-202ENST00000314759 SLC6A15Q9H2J7 730 aa12.28□□□□□ -0.44
SKA3-202ENST00000314759 SRMSQ9H3Y6 488 aa12.28□□□□□ -0.44
SKA3-202ENST00000314759 OPN4Q9UHM6 478 aa12.28□□□□□ -0.44
SKA3-202ENST00000314759 SPTBP11277 2137 aa12.28□□□□□ -0.44
SKA3-202ENST00000314759 LDOC1O95751 146 aaPredicted RBP12.28□□□□□ -0.44
SKA3-202ENST00000314759 GPR75O95800 540 aa12.28□□□□□ -0.44
SKA3-202ENST00000314759 RPL35P42766 123 aaKnown RBP12.28□□□□□ -0.44
SKA3-202ENST00000314759 PDGFRLQ15198 375 aa12.28□□□□□ -0.44
SKA3-202ENST00000314759 SLC35F3Q8IY50 421 aa12.28□□□□□ -0.44
SKA3-202ENST00000314759 C12orf76Q8N812 135 aaPredicted RBP12.28□□□□□ -0.44
SKA3-202ENST00000314759 DNAAF1Q8NEP3 725 aa12.28□□□□□ -0.44
SKA3-202ENST00000314759 OR4N2Q8NGD1 307 aa12.28□□□□□ -0.44
SKA3-202ENST00000314759 PMM1Q92871 262 aa12.28□□□□□ -0.44
SKA3-202ENST00000314759 PNPLA2Q96AD5 504 aa12.28□□□□□ -0.44
SKA3-202ENST00000314759 RASD2Q96D21 266 aa12.28□□□□□ -0.44
SKA3-202ENST00000314759 NMNAT2Q9BZQ4 307 aa12.28□□□□□ -0.44
SKA3-202ENST00000314759 RSPH9Q9H1X1 276 aaPredicted RBP12.28□□□□□ -0.44
SKA3-202ENST00000314759 ZNF346Q9UL40 294 aaKnown RBP12.28□□□□□ -0.44
SKA3-202ENST00000314759 PRELID3BQ9Y3B1 194 aa12.28□□□□□ -0.44
SKA3-202ENST00000314759 HEBP2Q9Y5Z4 205 aa12.28□□□□□ -0.44
SKA3-202ENST00000314759 ZNF98A6NK75 572 aa12.27□□□□□ -0.44
SKA3-202ENST00000314759 C4orf47A7E2U8 309 aa12.27□□□□□ -0.44
SKA3-202ENST00000314759 CTNSO60931 367 aa12.27□□□□□ -0.44
SKA3-202ENST00000314759 RPP14O95059 124 aaKnown RBP12.27□□□□□ -0.44
SKA3-202ENST00000314759 HPP00738 406 aa12.27□□□□□ -0.44
SKA3-202ENST00000314759 ZNF35P13682 527 aa12.27□□□□□ -0.44
SKA3-202ENST00000314759 CTNNB1P35222 781 aa12.27□□□□□ -0.44
SKA3-202ENST00000314759 MAT1AQ00266 395 aaKnown RBP12.27□□□□□ -0.44
SKA3-202ENST00000314759 FAM53BQ14153 422 aa12.27□□□□□ -0.44
SKA3-202ENST00000314759 PSRC1Q6PGN9 363 aaPredicted RBP12.27□□□□□ -0.44
SKA3-202ENST00000314759 DGAT2L6Q6ZPD8 337 aa12.27□□□□□ -0.44
SKA3-202ENST00000314759 SLC36A1Q7Z2H8 476 aa12.27□□□□□ -0.44
SKA3-202ENST00000314759 DND1Q8IYX4 353 aaKnown RBP12.27□□□□□ -0.44
SKA3-202ENST00000314759 OR5M9Q8NGP3 310 aa12.27□□□□□ -0.44
SKA3-202ENST00000314759 TRIM43Q96BQ3 446 aaPredicted RBP12.27□□□□□ -0.44
SKA3-202ENST00000314759 APOOQ9BUR5 198 aa12.27□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 44.1 ms