RNA–Protein interactions for RNA: ENST00000311487.9

HMGA1-201, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene HMGA1, Length 1,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-201ENST00000311487 RBM38Q9H0Z9 239 aaKnown RBP16.21■□□□□ 0.19
HMGA1-201ENST00000311487 TAS2R5Q9NYW4 299 aa16.21■□□□□ 0.19
HMGA1-201ENST00000311487 MED12LQ86YW9 2145 aa16.2■□□□□ 0.18
HMGA1-201ENST00000311487 A0A087WXM4 84 aa16.2■□□□□ 0.18
HMGA1-201ENST00000311487 MS4A18H0YCH9 400 aa16.2■□□□□ 0.18
HMGA1-201ENST00000311487 IGFBP5P24593 272 aa16.2■□□□□ 0.18
HMGA1-201ENST00000311487 P2RY4P51582 365 aa16.2■□□□□ 0.18
HMGA1-201ENST00000311487 RAD23AP54725 363 aa16.2■□□□□ 0.18
HMGA1-201ENST00000311487 H3F3AP84243 136 aa16.2■□□□□ 0.18
HMGA1-201ENST00000311487 DBPQ10586 325 aaPredicted RBP16.2■□□□□ 0.18
HMGA1-201ENST00000311487 FOXF2Q12947 444 aa16.2■□□□□ 0.18
HMGA1-201ENST00000311487 FHL1Q13642 323 aa16.2■□□□□ 0.18
HMGA1-201ENST00000311487 MS4A18Q3C1V0 323 aa16.2■□□□□ 0.18
HMGA1-201ENST00000311487 C1orf185Q5T7R7 199 aa16.2■□□□□ 0.18
HMGA1-201ENST00000311487 C1orf94Q6P1W5 598 aa16.2■□□□□ 0.18
HMGA1-201ENST00000311487 H1FNTQ75WM6 255 aaPredicted RBP16.2■□□□□ 0.18
HMGA1-201ENST00000311487 NANOGNBQ7Z5D8 188 aa16.2■□□□□ 0.18
HMGA1-201ENST00000311487 C8orf59Q8N0T1 100 aaPredicted RBP16.2■□□□□ 0.18
HMGA1-201ENST00000311487 OR5J2Q8NH18 312 aa16.2■□□□□ 0.18
HMGA1-201ENST00000311487 YTHDF1Q9BYJ9 559 aaKnown RBP16.2■□□□□ 0.18
HMGA1-201ENST00000311487 CHST11Q9NPF2 352 aa16.2■□□□□ 0.18
HMGA1-201ENST00000311487 KIF17Q9P2E2 1029 aa16.2■□□□□ 0.18
HMGA1-201ENST00000311487 CLCF1Q9UBD9 225 aa16.2■□□□□ 0.18
HMGA1-201ENST00000311487 UNC119BA6NIH7 251 aa16.19■□□□□ 0.18
HMGA1-201ENST00000311487 CCL21O00585 134 aa16.19■□□□□ 0.18
HMGA1-201ENST00000311487 PLPP3O14495 311 aa16.19■□□□□ 0.18
HMGA1-201ENST00000311487 RNF13O43567 381 aa16.19■□□□□ 0.18
HMGA1-201ENST00000311487 RPL18Q07020 188 aaKnown RBP16.19■□□□□ 0.18
HMGA1-201ENST00000311487 CLEC12AQ5QGZ9 265 aa16.19■□□□□ 0.18
HMGA1-201ENST00000311487 KDM4DQ6B0I6 523 aa16.19■□□□□ 0.18
HMGA1-201ENST00000311487 PAQR6Q6TCH4 344 aa16.19■□□□□ 0.18
HMGA1-201ENST00000311487 B3GNT6Q6ZMB0 384 aa16.19■□□□□ 0.18
HMGA1-201ENST00000311487 TMPRSS11FQ6ZWK6 438 aa16.19■□□□□ 0.18
HMGA1-201ENST00000311487 THAP5Q7Z6K1 395 aa16.19■□□□□ 0.18
HMGA1-201ENST00000311487 ADGRE4PQ86SQ3 457 aa16.19■□□□□ 0.18
HMGA1-201ENST00000311487 KIF18BQ86Y91 864 aa16.19■□□□□ 0.18
HMGA1-201ENST00000311487 WDFY1Q8IWB7 410 aa16.19■□□□□ 0.18
HMGA1-201ENST00000311487 TUSC5Q8IXB3 177 aa16.19■□□□□ 0.18
HMGA1-201ENST00000311487 NAXEQ8NCW5 288 aa16.19■□□□□ 0.18
HMGA1-201ENST00000311487 TTYH2Q9BSA4 534 aa16.19■□□□□ 0.18
HMGA1-201ENST00000311487 TP63Q9H3D4 680 aaPredicted RBP16.19■□□□□ 0.18
HMGA1-201ENST00000311487 FKRPQ9H9S5 495 aa16.19■□□□□ 0.18
HMGA1-201ENST00000311487 ZNF229Q9UJW7 825 aa16.19■□□□□ 0.18
HMGA1-201ENST00000311487 ORC6Q9Y5N6 252 aa16.19■□□□□ 0.18
HMGA1-201ENST00000311487 AQP7P3A6NL99 342 aa16.19■□□□□ 0.18
HMGA1-201ENST00000311487 LRRTM2O43300 516 aa16.19■□□□□ 0.18
HMGA1-201ENST00000311487 KLF4O43474 513 aa16.19■□□□□ 0.18
HMGA1-201ENST00000311487 WDR1O75083 606 aa16.19■□□□□ 0.18
HMGA1-201ENST00000311487 NTF4P34130 210 aa16.19■□□□□ 0.18
HMGA1-201ENST00000311487 SLC9A3P48764 834 aa16.19■□□□□ 0.18
HMGA1-201ENST00000311487 FXYD6P3P58550 94 aa16.19■□□□□ 0.18
HMGA1-201ENST00000311487 SIRPAP78324 504 aa16.19■□□□□ 0.18
HMGA1-201ENST00000311487 RASGEF1BQ0VAM2 473 aa16.19■□□□□ 0.18
HMGA1-201ENST00000311487 C5orf46Q6UWT4 87 aa16.19■□□□□ 0.18
HMGA1-201ENST00000311487 THSD4Q6ZMP0 1018 aa16.19■□□□□ 0.18
HMGA1-201ENST00000311487 Q6ZPB1 254 aaPredicted RBP16.19■□□□□ 0.18
HMGA1-201ENST00000311487 GNPDA2Q8TDQ7 276 aa16.19■□□□□ 0.18
HMGA1-201ENST00000311487 FAM210AQ96ND0 272 aa16.19■□□□□ 0.18
HMGA1-201ENST00000311487 TSC22D3Q99576 134 aa16.19■□□□□ 0.18
HMGA1-201ENST00000311487 PLA2G12AQ9BZM1 189 aa16.19■□□□□ 0.18
HMGA1-201ENST00000311487 CALHM2Q9HA72 323 aa16.19■□□□□ 0.18
HMGA1-201ENST00000311487 MCCC2Q9HCC0 563 aa16.19■□□□□ 0.18
HMGA1-201ENST00000311487 LOC100130705A0A1B0GUX0 176 aa16.18■□□□□ 0.18
HMGA1-201ENST00000311487 SLC16A6O15403 523 aa16.18■□□□□ 0.18
HMGA1-201ENST00000311487 OR6A2O95222 327 aa16.18■□□□□ 0.18
HMGA1-201ENST00000311487 MT-ATP6P00846 226 aa16.18■□□□□ 0.18
HMGA1-201ENST00000311487 GLI4P10075 376 aa16.18■□□□□ 0.18
HMGA1-201ENST00000311487 POU1F1P28069 291 aa16.18■□□□□ 0.18
HMGA1-201ENST00000311487 POLR2IP36954 125 aaKnown RBP16.18■□□□□ 0.18
HMGA1-201ENST00000311487 PER3P56645 1201 aa16.18■□□□□ 0.18
HMGA1-201ENST00000311487 NSUN5P2Q63ZY6 315 aa16.18■□□□□ 0.18
HMGA1-201ENST00000311487 KLHL17Q6TDP4 642 aa16.18■□□□□ 0.18
HMGA1-201ENST00000311487 ZHX1-C8orf76Q96EF9 292 aa16.18■□□□□ 0.18
HMGA1-201ENST00000311487 TXNDC15Q96J42 360 aa16.18■□□□□ 0.18
HMGA1-201ENST00000311487 EMC6Q9BV81 110 aa16.18■□□□□ 0.18
HMGA1-201ENST00000311487 KRCC1Q9NPI7 259 aaPredicted RBP16.18■□□□□ 0.18
HMGA1-201ENST00000311487 MED29Q9NX70 200 aa16.18■□□□□ 0.18
HMGA1-201ENST00000311487 MRPL39Q9NYK5 338 aaKnown RBP16.18■□□□□ 0.18
HMGA1-201ENST00000311487 B3GAT1Q9P2W7 334 aa16.18■□□□□ 0.18
HMGA1-201ENST00000311487 ING1Q9UK53 422 aaPredicted RBP16.18■□□□□ 0.18
HMGA1-201ENST00000311487 DIDO1Q9BTC0 2240 aaKnown RBP16.18■□□□□ 0.18
HMGA1-201ENST00000311487 MCIDASD6RGH6 385 aa16.17■□□□□ 0.18
HMGA1-201ENST00000311487 GABRA1P14867 456 aa16.17■□□□□ 0.18
HMGA1-201ENST00000311487 EDNRAP25101 427 aa16.17■□□□□ 0.18
HMGA1-201ENST00000311487 IFNGR2P38484 337 aa16.17■□□□□ 0.18
HMGA1-201ENST00000311487 CA7P43166 264 aa16.17■□□□□ 0.18
HMGA1-201ENST00000311487 GSSP48637 474 aa16.17■□□□□ 0.18
HMGA1-201ENST00000311487 POU3F1Q03052 451 aaPredicted RBP16.17■□□□□ 0.18
HMGA1-201ENST00000311487 PUDPQ08623 228 aa16.17■□□□□ 0.18
HMGA1-201ENST00000311487 TOP3AQ13472 1001 aaPredicted RBP16.17■□□□□ 0.18
HMGA1-201ENST00000311487 ZBED5Q49AG3 693 aa16.17■□□□□ 0.18
HMGA1-201ENST00000311487 EEF1A1P5Q5VTE0 462 aa16.17■□□□□ 0.18
HMGA1-201ENST00000311487 CNEP1R1Q8N9A8 125 aa16.17■□□□□ 0.18
HMGA1-201ENST00000311487 GALNT11Q8NCW6 608 aa16.17■□□□□ 0.18
HMGA1-201ENST00000311487 RNF128Q8TEB7 428 aa16.17■□□□□ 0.18
HMGA1-201ENST00000311487 DGCR14Q96DF8 476 aaKnown RBP16.17■□□□□ 0.18
HMGA1-201ENST00000311487 SAMD8Q96LT4 415 aa16.17■□□□□ 0.18
HMGA1-201ENST00000311487 ZNF385AQ96PM9 386 aaKnown RBP16.17■□□□□ 0.18
HMGA1-201ENST00000311487 NAA11Q9BSU3 229 aaPredicted RBP16.17■□□□□ 0.18
HMGA1-201ENST00000311487 C12orf49Q9H741 205 aa16.17■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms