RNA–Protein interactions for RNA: ENST00000308271.13

USP48-201, Transcript of ubiquitin specific peptidase 48, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP48, Length 4,595 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-201ENST00000308271 H3BNC9 293 aa17.83■□□□□ 0.44
USP48-201ENST00000308271 FBXO24O75426 580 aa17.83■□□□□ 0.44
USP48-201ENST00000308271 ZNF254O75437 659 aa17.83■□□□□ 0.44
USP48-201ENST00000308271 POU3F3P20264 500 aaPredicted RBP17.83■□□□□ 0.44
USP48-201ENST00000308271 BSGP35613 385 aa17.83■□□□□ 0.44
USP48-201ENST00000308271 BCL6P41182 706 aa17.83■□□□□ 0.44
USP48-201ENST00000308271 DEFB110Q30KQ9 67 aa17.83■□□□□ 0.44
USP48-201ENST00000308271 WBP2Q969T9 261 aa17.83■□□□□ 0.44
USP48-201ENST00000308271 ARRDC3Q96B67 414 aa17.83■□□□□ 0.44
USP48-201ENST00000308271 PLA2G12AQ9BZM1 189 aa17.83■□□□□ 0.44
USP48-201ENST00000308271 CYP8B1Q9UNU6 501 aa17.83■□□□□ 0.44
USP48-201ENST00000308271 SLC7A11Q9UPY5 501 aa17.83■□□□□ 0.44
USP48-201ENST00000308271 MEIKINA0A087WXM9 373 aa17.82■□□□□ 0.44
USP48-201ENST00000308271 A0A0J9YY10 115 aa17.82■□□□□ 0.44
USP48-201ENST00000308271 PRICKLE3O43900 615 aaPredicted RBP17.82■□□□□ 0.44
USP48-201ENST00000308271 LIMS3P0CW19 117 aa17.82■□□□□ 0.44
USP48-201ENST00000308271 LIMS4P0CW20 117 aa17.82■□□□□ 0.44
USP48-201ENST00000308271 EPXP11678 715 aa17.82■□□□□ 0.44
USP48-201ENST00000308271 CHATP28329 748 aa17.82■□□□□ 0.44
USP48-201ENST00000308271 PPT1P50897 306 aa17.82■□□□□ 0.44
USP48-201ENST00000308271 DAP3P51398 398 aaKnown RBP17.82■□□□□ 0.44
USP48-201ENST00000308271 SNTB1Q13884 538 aaKnown RBP17.82■□□□□ 0.44
USP48-201ENST00000308271 IRF3Q14653 427 aa17.82■□□□□ 0.44
USP48-201ENST00000308271 CCDC71LQ8N9Z2 235 aa17.82■□□□□ 0.44
USP48-201ENST00000308271 SPIN2AQ99865 258 aa17.82■□□□□ 0.44
USP48-201ENST00000308271 SPIN2BQ9BPZ2 258 aa17.82■□□□□ 0.44
USP48-201ENST00000308271 ZNF629Q9UEG4 869 aaPredicted RBP17.82■□□□□ 0.44
USP48-201ENST00000308271 NUDT19A8MXV4 375 aa17.82■□□□□ 0.44
USP48-201ENST00000308271 IRS1P35568 1242 aa17.82■□□□□ 0.44
USP48-201ENST00000308271 CAMK2DQ13557 499 aa17.82■□□□□ 0.44
USP48-201ENST00000308271 C3orf49Q96BT1 292 aa17.82■□□□□ 0.44
USP48-201ENST00000308271 ZC3HAV1LQ96H79 300 aaKnown RBP17.82■□□□□ 0.44
USP48-201ENST00000308271 PRSS44E7EML9 344 aa17.82■□□□□ 0.44
USP48-201ENST00000308271 HOXB5P09067 269 aa17.82■□□□□ 0.44
USP48-201ENST00000308271 BMPR1AP36894 532 aa17.82■□□□□ 0.44
USP48-201ENST00000308271 EPHA5P54756 1037 aa17.82■□□□□ 0.44
USP48-201ENST00000308271 CBFBQ13951 182 aa17.82■□□□□ 0.44
USP48-201ENST00000308271 IHHQ14623 411 aa17.82■□□□□ 0.44
USP48-201ENST00000308271 DUSP22Q9NRW4 184 aa17.82■□□□□ 0.44
USP48-201ENST00000308271 RNF186Q9NXI6 227 aa17.82■□□□□ 0.44
USP48-201ENST00000308271 M0QYG6 137 aa17.82■□□□□ 0.44
USP48-201ENST00000308271 DVL2O14641 736 aa17.82■□□□□ 0.44
USP48-201ENST00000308271 EIF2S3P41091 472 aaKnown RBP17.82■□□□□ 0.44
USP48-201ENST00000308271 SLC9A3R2Q15599 337 aa17.82■□□□□ 0.44
USP48-201ENST00000308271 VASNQ6EMK4 673 aa17.82■□□□□ 0.44
USP48-201ENST00000308271 SLC16A9Q7RTY1 509 aa17.82■□□□□ 0.44
USP48-201ENST00000308271 SYT9Q86SS6 491 aa17.82■□□□□ 0.44
USP48-201ENST00000308271 CDH26Q8IXH8 852 aa17.82■□□□□ 0.44
USP48-201ENST00000308271 SUMF2Q8NBJ7 301 aa17.82■□□□□ 0.44
USP48-201ENST00000308271 CCDC54Q8NEL0 328 aa17.82■□□□□ 0.44
USP48-201ENST00000308271 OR2AK2Q8NG84 335 aa17.82■□□□□ 0.44
USP48-201ENST00000308271 ASB13Q8WXK3 278 aa17.82■□□□□ 0.44
USP48-201ENST00000308271 TOMM40LQ969M1 308 aa17.82■□□□□ 0.44
USP48-201ENST00000308271 ZDHHC12Q96GR4 267 aa17.82■□□□□ 0.44
USP48-201ENST00000308271 ZNF578Q96N58 590 aaPredicted RBP17.82■□□□□ 0.44
USP48-201ENST00000308271 A0A1W2PR48 441 aa17.81■□□□□ 0.44
USP48-201ENST00000308271 SELENOFO60613 162 aa17.81■□□□□ 0.44
USP48-201ENST00000308271 CD22P20273 847 aa17.81■□□□□ 0.44
USP48-201ENST00000308271 CAV2P51636 162 aa17.81■□□□□ 0.44
USP48-201ENST00000308271 C21orf58P58505 322 aa17.81■□□□□ 0.44
USP48-201ENST00000308271 TLE3Q04726 772 aa17.81■□□□□ 0.44
USP48-201ENST00000308271 DUSP5Q16690 384 aa17.81■□□□□ 0.44
USP48-201ENST00000308271 TMEM151BQ8IW70 566 aa17.81■□□□□ 0.44
USP48-201ENST00000308271 OR4K15Q8NH41 348 aa17.81■□□□□ 0.44
USP48-201ENST00000308271 MS4A6EQ96DS6 147 aa17.81■□□□□ 0.44
USP48-201ENST00000308271 SLC52A3Q9NQ40 469 aa17.81■□□□□ 0.44
USP48-201ENST00000308271 PARPBPQ9NWS1 579 aa17.81■□□□□ 0.44
USP48-201ENST00000308271 ARID1BQ8NFD5 2236 aaPredicted RBP17.81■□□□□ 0.44
USP48-201ENST00000308271 RAE1P78406 368 aaKnown RBP17.81■□□□□ 0.44
USP48-201ENST00000308271 PLA2G7Q13093 441 aa17.81■□□□□ 0.44
USP48-201ENST00000308271 FAM27D1Q5T7N8 215 aa17.81■□□□□ 0.44
USP48-201ENST00000308271 OR5M10Q6IEU7 315 aa17.81■□□□□ 0.44
USP48-201ENST00000308271 ADGRG3Q86Y34 549 aa17.81■□□□□ 0.44
USP48-201ENST00000308271 SULF2Q8IWU5 870 aa17.81■□□□□ 0.44
USP48-201ENST00000308271 SLC35A4Q96G79 324 aa17.81■□□□□ 0.44
USP48-201ENST00000308271 SDF2Q99470 211 aa17.81■□□□□ 0.44
USP48-201ENST00000308271 AUNIPQ9H7T9 357 aa17.81■□□□□ 0.44
USP48-201ENST00000308271 FAM212BQ9NTI7 297 aaPredicted RBP17.81■□□□□ 0.44
USP48-201ENST00000308271 SERPINA5P05154 406 aa17.81■□□□□ 0.44
USP48-201ENST00000308271 OR10R2Q8NGX6 335 aa17.81■□□□□ 0.44
USP48-201ENST00000308271 POFUT1Q9H488 388 aa17.81■□□□□ 0.44
USP48-201ENST00000308271 SLC2A4RGQ9NR83 387 aa17.81■□□□□ 0.44
USP48-201ENST00000308271 A0A0A6YYC8 382 aaPredicted RBP17.81■□□□□ 0.44
USP48-201ENST00000308271 EFCAB7A8K855 629 aa17.81■□□□□ 0.44
USP48-201ENST00000308271 I3L1I5 382 aaPredicted RBP17.81■□□□□ 0.44
USP48-201ENST00000308271 K7EPK0 472 aa17.81■□□□□ 0.44
USP48-201ENST00000308271 MAN2B1O00754 1011 aa17.81■□□□□ 0.44
USP48-201ENST00000308271 HRO43593 1189 aa17.81■□□□□ 0.44
USP48-201ENST00000308271 KLF8O95600 359 aaPredicted RBP17.81■□□□□ 0.44
USP48-201ENST00000308271 TMEM225BP0DP42 221 aa17.81■□□□□ 0.44
USP48-201ENST00000308271 RFX2P48378 723 aa17.81■□□□□ 0.44
USP48-201ENST00000308271 ZNF84P51523 738 aa17.81■□□□□ 0.44
USP48-201ENST00000308271 ARHGAP11BQ3KRB8 267 aa17.81■□□□□ 0.44
USP48-201ENST00000308271 RNLSQ5VYX0 342 aa17.81■□□□□ 0.44
USP48-201ENST00000308271 CD300LDQ6UXZ3 194 aa17.81■□□□□ 0.44
USP48-201ENST00000308271 FAM71E2Q8N5Q1 922 aa17.81■□□□□ 0.44
USP48-201ENST00000308271 FAM71F1Q96KD3 344 aaPredicted RBP17.81■□□□□ 0.44
USP48-201ENST00000308271 SCPEP1Q9HB40 452 aa17.81■□□□□ 0.44
USP48-201ENST00000308271 IL20Q9NYY1 176 aa17.81■□□□□ 0.44
USP48-201ENST00000308271 NTNG1Q9Y2I2 539 aa17.81■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms