RNA–Protein interactions for RNA: ENST00000306024.3

LSM3-201, Transcript of LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM3, Length 3,815 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM3-201ENST00000306024 M0R036 132 aa10.03□□□□□ -0.8
LSM3-201ENST00000306024 SCN2BO60939 215 aa10.03□□□□□ -0.8
LSM3-201ENST00000306024 CSF2RBP32927 897 aa10.03□□□□□ -0.8
LSM3-201ENST00000306024 LIM2P55344 173 aa10.03□□□□□ -0.8
LSM3-201ENST00000306024 CSNK1G2P78368 415 aa10.03□□□□□ -0.8
LSM3-201ENST00000306024 FZD5Q13467 585 aa10.03□□□□□ -0.8
LSM3-201ENST00000306024 C21orf62-AS1Q17RA5 79 aa10.03□□□□□ -0.8
LSM3-201ENST00000306024 DEFB134Q4QY38 66 aa10.03□□□□□ -0.8
LSM3-201ENST00000306024 C14orf28Q4W4Y0 310 aa10.03□□□□□ -0.8
LSM3-201ENST00000306024 PHF19Q5T6S3 580 aa10.03□□□□□ -0.8
LSM3-201ENST00000306024 OR2A1Q8NGT9 310 aa10.03□□□□□ -0.8
LSM3-201ENST00000306024 ZFYVE21Q9BQ24 234 aa10.03□□□□□ -0.8
LSM3-201ENST00000306024 DUSP23Q9BVJ7 150 aa10.03□□□□□ -0.8
LSM3-201ENST00000306024 TMEM231Q9H6L2 316 aa10.03□□□□□ -0.8
LSM3-201ENST00000306024 SH2B3Q9UQQ2 575 aa10.03□□□□□ -0.8
LSM3-201ENST00000306024 NOP16Q9Y3C1 178 aaKnown RBP10.03□□□□□ -0.8
LSM3-201ENST00000306024 SLC22A7Q9Y694 548 aa10.03□□□□□ -0.8
LSM3-201ENST00000306024 LOC100509620A0A075B734 347 aa10.03□□□□□ -0.8
LSM3-201ENST00000306024 CCDC163A0A0D9SF12 145 aa10.03□□□□□ -0.8
LSM3-201ENST00000306024 A0A0J9YY10 115 aa10.03□□□□□ -0.8
LSM3-201ENST00000306024 PQLC2LA1A4F0 135 aa10.03□□□□□ -0.8
LSM3-201ENST00000306024 LY86O95711 162 aa10.03□□□□□ -0.8
LSM3-201ENST00000306024 CER1O95813 267 aa10.03□□□□□ -0.8
LSM3-201ENST00000306024 HIST1H2ABP04908 130 aa10.03□□□□□ -0.8
LSM3-201ENST00000306024 MYF5P13349 255 aa10.03□□□□□ -0.8
LSM3-201ENST00000306024 ANXA11P50995 505 aaKnown RBP10.03□□□□□ -0.8
LSM3-201ENST00000306024 SLC25A35Q3KQZ1 300 aa10.03□□□□□ -0.8
LSM3-201ENST00000306024 MANEAQ5SRI9 462 aa10.03□□□□□ -0.8
LSM3-201ENST00000306024 HIST3H2AQ7L7L0 130 aa10.03□□□□□ -0.8
LSM3-201ENST00000306024 KLHDC8AQ8IYD2 350 aa10.03□□□□□ -0.8
LSM3-201ENST00000306024 LINC01555Q8NAE3 123 aa10.03□□□□□ -0.8
LSM3-201ENST00000306024 OR1S1Q8NH92 325 aa10.03□□□□□ -0.8
LSM3-201ENST00000306024 BBS10Q8TAM1 723 aa10.03□□□□□ -0.8
LSM3-201ENST00000306024 BRIX1Q8TDN6 353 aaKnown RBP10.03□□□□□ -0.8
LSM3-201ENST00000306024 HIST1H2ACQ93077 130 aa10.03□□□□□ -0.8
LSM3-201ENST00000306024 HRASLSQ9HDD0 168 aa10.03□□□□□ -0.8
LSM3-201ENST00000306024 PDE7BQ9NP56 450 aa10.03□□□□□ -0.8
LSM3-201ENST00000306024 CA10Q9NS85 328 aa10.03□□□□□ -0.8
LSM3-201ENST00000306024 MED9Q9NWA0 146 aa10.03□□□□□ -0.8
LSM3-201ENST00000306024 CAMK2AQ9UQM7 478 aa10.03□□□□□ -0.8
LSM3-201ENST00000306024 R4GN57 208 aa10.03□□□□□ -0.8
LSM3-201ENST00000306024 OR6C68A6NDL8 312 aa10.02□□□□□ -0.8
LSM3-201ENST00000306024 GLOD5A6NK44 160 aa10.02□□□□□ -0.8
LSM3-201ENST00000306024 B3GALT2O43825 422 aa10.02□□□□□ -0.8
LSM3-201ENST00000306024 PTAFRP25105 342 aa10.02□□□□□ -0.8
LSM3-201ENST00000306024 PTGFRP43088 359 aa10.02□□□□□ -0.8
LSM3-201ENST00000306024 PTH2RP49190 550 aa10.02□□□□□ -0.8
LSM3-201ENST00000306024 RNF212Q495C1 297 aa10.02□□□□□ -0.8
LSM3-201ENST00000306024 B3GNTL1Q67FW5 361 aaPredicted RBP10.02□□□□□ -0.8
LSM3-201ENST00000306024 WDR53Q7Z5U6 358 aaPredicted RBP10.02□□□□□ -0.8
LSM3-201ENST00000306024 PLXDC1Q8IUK5 500 aa10.02□□□□□ -0.8
LSM3-201ENST00000306024 CSNK1A1LQ8N752 337 aa10.02□□□□□ -0.8
LSM3-201ENST00000306024 OR8S1Q8NH09 359 aa10.02□□□□□ -0.8
LSM3-201ENST00000306024 LGALS14Q8TCE9 139 aa10.02□□□□□ -0.8
LSM3-201ENST00000306024 SMAP2Q8WU79 429 aaPredicted RBP10.02□□□□□ -0.8
LSM3-201ENST00000306024 C14orf79Q96F83 325 aa10.02□□□□□ -0.8
LSM3-201ENST00000306024 LURAP1Q96LR2 239 aa10.02□□□□□ -0.8
LSM3-201ENST00000306024 BRF2Q9HAW0 419 aa10.02□□□□□ -0.8
LSM3-201ENST00000306024 COA4Q9NYJ1 87 aa10.02□□□□□ -0.8
LSM3-201ENST00000306024 CNR1P21554 472 aa10.02□□□□□ -0.81
LSM3-201ENST00000306024 GPR4P46093 362 aa10.02□□□□□ -0.81
LSM3-201ENST00000306024 PPT1P50897 306 aa10.02□□□□□ -0.81
LSM3-201ENST00000306024 ZP1P60852 638 aa10.02□□□□□ -0.81
LSM3-201ENST00000306024 AIMP2Q13155 320 aaKnown RBP10.02□□□□□ -0.81
LSM3-201ENST00000306024 DYRK1AQ13627 763 aa10.02□□□□□ -0.81
LSM3-201ENST00000306024 NKAIN2Q5VXU1 208 aa10.02□□□□□ -0.81
LSM3-201ENST00000306024 TCTN3Q6NUS6 607 aa10.02□□□□□ -0.81
LSM3-201ENST00000306024 ZNF322Q6U7Q0 402 aaPredicted RBP10.02□□□□□ -0.81
LSM3-201ENST00000306024 PUSL1Q8N0Z8 303 aaKnown RBP10.02□□□□□ -0.81
LSM3-201ENST00000306024 OR2I1PQ8NGU4 316 aa10.02□□□□□ -0.81
LSM3-201ENST00000306024 OR52I2Q8NH67 350 aa10.02□□□□□ -0.81
LSM3-201ENST00000306024 SNX33Q8WV41 574 aa10.02□□□□□ -0.81
LSM3-201ENST00000306024 OSTF1Q92882 214 aa10.02□□□□□ -0.81
LSM3-201ENST00000306024 INTS12Q96CB8 462 aaKnown RBP10.02□□□□□ -0.81
LSM3-201ENST00000306024 GAL3ST1Q99999 423 aa10.02□□□□□ -0.81
LSM3-201ENST00000306024 ARRDC1-AS1Q9H2J1 176 aa10.02□□□□□ -0.81
LSM3-201ENST00000306024 SMOC1Q9H4F8 434 aa10.02□□□□□ -0.81
LSM3-201ENST00000306024 FGF20Q9NP95 211 aaPredicted RBP10.02□□□□□ -0.81
LSM3-201ENST00000306024 POLE3Q9NRF9 147 aa10.02□□□□□ -0.81
LSM3-201ENST00000306024 CBLCQ9ULV8 474 aa10.02□□□□□ -0.81
LSM3-201ENST00000306024 AHCTF1Q8WYP5 2266 aa10.02□□□□□ -0.81
LSM3-201ENST00000306024 MPTX1A8MV57 137 aa10.02□□□□□ -0.81
LSM3-201ENST00000306024 GPR37L1O60883 481 aa10.02□□□□□ -0.81
LSM3-201ENST00000306024 RBBP9O75884 186 aa10.02□□□□□ -0.81
LSM3-201ENST00000306024 AVPR2P30518 371 aa10.02□□□□□ -0.81
LSM3-201ENST00000306024 GCGRP47871 477 aa10.02□□□□□ -0.81
LSM3-201ENST00000306024 HMGA2P52926 109 aa10.02□□□□□ -0.81
LSM3-201ENST00000306024 RGS8P57771 180 aaPredicted RBP10.02□□□□□ -0.81
LSM3-201ENST00000306024 POU4F2Q12837 409 aa10.02□□□□□ -0.81
LSM3-201ENST00000306024 HLA-BQ31612 363 aa10.02□□□□□ -0.81
LSM3-201ENST00000306024 PMS2CLQ68D20 193 aa10.02□□□□□ -0.81
LSM3-201ENST00000306024 ABHD13Q7L211 337 aa10.02□□□□□ -0.81
LSM3-201ENST00000306024 TSEN54Q7Z6J9 526 aaKnown RBP10.02□□□□□ -0.81
LSM3-201ENST00000306024 TPRA1Q86W33 373 aa10.02□□□□□ -0.81
LSM3-201ENST00000306024 ELP5Q8TE02 316 aa10.02□□□□□ -0.81
LSM3-201ENST00000306024 ZFPM2Q8WW38 1151 aa10.02□□□□□ -0.81
LSM3-201ENST00000306024 ZNF780BQ9Y6R6 833 aa10.02□□□□□ -0.81
LSM3-201ENST00000306024 PLSCR5A0PG75 271 aa10.01□□□□□ -0.81
LSM3-201ENST00000306024 IL3P08700 152 aa10.01□□□□□ -0.81
LSM3-201ENST00000306024 FPR3P25089 353 aa10.01□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms