RNA–Protein interactions for RNA: ENST00000295550.8

COL6A3-201, Transcript of collagen type VI alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL6A3, Length 10,749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-201ENST00000295550 RPE65Q16518 533 aa9.18□□□□□ -0.94
COL6A3-201ENST00000295550 ADGRF3Q8IZF5 1079 aa9.18□□□□□ -0.94
COL6A3-201ENST00000295550 FAM160A2Q8N612 972 aaPredicted RBP9.18□□□□□ -0.94
COL6A3-201ENST00000295550 RHOXF1Q8NHV9 184 aa9.18□□□□□ -0.94
COL6A3-201ENST00000295550 NKX3-1Q99801 234 aaPredicted RBP9.18□□□□□ -0.94
COL6A3-201ENST00000295550 GMEB2Q9UKD1 530 aa9.18□□□□□ -0.94
COL6A3-201ENST00000295550 GABRPO00591 440 aa9.18□□□□□ -0.94
COL6A3-201ENST00000295550 ACVR1Q04771 509 aa9.18□□□□□ -0.94
COL6A3-201ENST00000295550 BAXQ07812 192 aa9.18□□□□□ -0.94
COL6A3-201ENST00000295550 OR4N5Q8IXE1 308 aa9.18□□□□□ -0.94
COL6A3-201ENST00000295550 DOK4Q8TEW6 326 aa9.18□□□□□ -0.94
COL6A3-201ENST00000295550 CDS1Q92903 461 aa9.18□□□□□ -0.94
COL6A3-201ENST00000295550 MED16Q9Y2X0 877 aa9.18□□□□□ -0.94
COL6A3-201ENST00000295550 NUDT21O43809 227 aaKnown RBP9.18□□□□□ -0.94
COL6A3-201ENST00000295550 GDI1P31150 447 aa9.18□□□□□ -0.94
COL6A3-201ENST00000295550 MC3RP41968 323 aa9.18□□□□□ -0.94
COL6A3-201ENST00000295550 GRB2P62993 217 aaKnown RBP9.18□□□□□ -0.94
COL6A3-201ENST00000295550 HTR4Q13639 388 aa9.18□□□□□ -0.94
COL6A3-201ENST00000295550 GRASPQ7Z6J2 395 aaPredicted RBP9.18□□□□□ -0.94
COL6A3-201ENST00000295550 TUBB1Q9H4B7 451 aa9.18□□□□□ -0.94
COL6A3-201ENST00000295550 OPA3Q9H6K4 179 aa9.18□□□□□ -0.94
COL6A3-201ENST00000295550 FOXE1O00358 373 aaPredicted RBP9.18□□□□□ -0.94
COL6A3-201ENST00000295550 CLDN1O95832 211 aa9.18□□□□□ -0.94
COL6A3-201ENST00000295550 CCL5P13501 91 aa9.18□□□□□ -0.94
COL6A3-201ENST00000295550 XCR1P46094 333 aa9.18□□□□□ -0.94
COL6A3-201ENST00000295550 RGRP47804 291 aa9.18□□□□□ -0.94
COL6A3-201ENST00000295550 VAMP3Q15836 100 aa9.18□□□□□ -0.94
COL6A3-201ENST00000295550 FUNDC1Q8IVP5 155 aa9.18□□□□□ -0.94
COL6A3-201ENST00000295550 C12orf57Q99622 126 aa9.18□□□□□ -0.94
COL6A3-201ENST00000295550 RYDENQ9NUL5 291 aaKnown RBP9.18□□□□□ -0.94
COL6A3-201ENST00000295550 ZNF337Q9Y3M9 751 aa9.18□□□□□ -0.94
COL6A3-201ENST00000295550 DUX1O43812 170 aa9.18□□□□□ -0.94
COL6A3-201ENST00000295550 P04436 131 aa9.18□□□□□ -0.94
COL6A3-201ENST00000295550 HPNP05981 417 aa9.18□□□□□ -0.94
COL6A3-201ENST00000295550 S100A11P31949 105 aa9.18□□□□□ -0.94
COL6A3-201ENST00000295550 WDR5P61964 334 aaKnown RBP9.18□□□□□ -0.94
COL6A3-201ENST00000295550 FAM189BP81408 668 aa9.18□□□□□ -0.94
COL6A3-201ENST00000295550 ILKQ13418 452 aa9.18□□□□□ -0.94
COL6A3-201ENST00000295550 PIN1Q13526 163 aaPredicted RBP9.18□□□□□ -0.94
COL6A3-201ENST00000295550 PLAC9Q5JTB6 97 aa9.18□□□□□ -0.94
COL6A3-201ENST00000295550 KDM4DQ6B0I6 523 aa9.18□□□□□ -0.94
COL6A3-201ENST00000295550 C17orf99Q6UX52 265 aa9.18□□□□□ -0.94
COL6A3-201ENST00000295550 ZNF551Q7Z340 670 aaPredicted RBP9.18□□□□□ -0.94
COL6A3-201ENST00000295550 BPIFB2Q8N4F0 458 aa9.18□□□□□ -0.94
COL6A3-201ENST00000295550 CHST14Q8NCH0 376 aa9.18□□□□□ -0.94
COL6A3-201ENST00000295550 MARC2Q969Z3 335 aa9.18□□□□□ -0.94
COL6A3-201ENST00000295550 UBL7Q96S82 380 aaPredicted RBP9.18□□□□□ -0.94
COL6A3-201ENST00000295550 C5AR2Q9P296 337 aa9.18□□□□□ -0.94
COL6A3-201ENST00000295550 V9GYS6 101 aa9.18□□□□□ -0.94
COL6A3-201ENST00000295550 RALGAPA2Q2PPJ7 1873 aa9.17□□□□□ -0.94
COL6A3-201ENST00000295550 BRWD3Q6RI45 1802 aa9.17□□□□□ -0.94
COL6A3-201ENST00000295550 SLC31A2O15432 143 aa9.17□□□□□ -0.94
COL6A3-201ENST00000295550 CCR7P32248 378 aa9.17□□□□□ -0.94
COL6A3-201ENST00000295550 RBMXL3Q8N7X1 1067 aaKnown RBP9.17□□□□□ -0.94
COL6A3-201ENST00000295550 OR9A2Q8NGT5 310 aa9.17□□□□□ -0.94
COL6A3-201ENST00000295550 TMEM163Q8TC26 289 aa9.17□□□□□ -0.94
COL6A3-201ENST00000295550 RBFOX1Q9NWB1 397 aaKnown RBP9.17□□□□□ -0.94
COL6A3-201ENST00000295550 NPFFR2Q9Y5X5 522 aa9.17□□□□□ -0.94
COL6A3-201ENST00000295550 LOC102725191A0A1B0GVB3 256 aa9.17□□□□□ -0.94
COL6A3-201ENST00000295550 PRAMEF27A3QJZ7 478 aa9.17□□□□□ -0.94
COL6A3-201ENST00000295550 H3BML4 177 aa9.17□□□□□ -0.94
COL6A3-201ENST00000295550 TGM5O43548 720 aa9.17□□□□□ -0.94
COL6A3-201ENST00000295550 CTRB1P17538 263 aa9.17□□□□□ -0.94
COL6A3-201ENST00000295550 ANXA7P20073 488 aaKnown RBP9.17□□□□□ -0.94
COL6A3-201ENST00000295550 PTGER4P35408 488 aa9.17□□□□□ -0.94
COL6A3-201ENST00000295550 ETV6P41212 452 aa9.17□□□□□ -0.94
COL6A3-201ENST00000295550 FLI1Q01543 452 aaPredicted RBP9.17□□□□□ -0.94
COL6A3-201ENST00000295550 FAM69BQ5VUD6 431 aa9.17□□□□□ -0.94
COL6A3-201ENST00000295550 PRAMEF9Q5VWM5 478 aa9.17□□□□□ -0.94
COL6A3-201ENST00000295550 CTRB2Q6GPI1 263 aa9.17□□□□□ -0.94
COL6A3-201ENST00000295550 HTR3DQ70Z44 454 aa9.17□□□□□ -0.94
COL6A3-201ENST00000295550 ASB17Q8WXJ9 295 aa9.17□□□□□ -0.94
COL6A3-201ENST00000295550 DIO2Q92813 273 aa9.17□□□□□ -0.94
COL6A3-201ENST00000295550 CCDC74AQ96AQ1 378 aa9.17□□□□□ -0.94
COL6A3-201ENST00000295550 SEMA4GQ9NTN9 838 aa9.17□□□□□ -0.94
COL6A3-201ENST00000295550 ASH2LQ9UBL3 628 aa9.17□□□□□ -0.94
COL6A3-201ENST00000295550 ABCA4P78363 2273 aa9.17□□□□□ -0.94
COL6A3-201ENST00000295550 CPN1P15169 458 aa9.17□□□□□ -0.94
COL6A3-201ENST00000295550 ARRB1P49407 418 aaPredicted RBP9.17□□□□□ -0.94
COL6A3-201ENST00000295550 TMEM71Q6P5X7 295 aa9.17□□□□□ -0.94
COL6A3-201ENST00000295550 OR10Z1Q8NGY1 313 aa9.17□□□□□ -0.94
COL6A3-201ENST00000295550 ZNF586Q9NXT0 402 aa9.17□□□□□ -0.94
COL6A3-201ENST00000295550 TRAV27A0A087WT01 109 aa9.17□□□□□ -0.94
COL6A3-201ENST00000295550 ZFP92A6NM28 416 aa9.17□□□□□ -0.94
COL6A3-201ENST00000295550 ANKRD30BLA7E2S9 258 aa9.17□□□□□ -0.94
COL6A3-201ENST00000295550 CHEK1O14757 476 aa9.17□□□□□ -0.94
COL6A3-201ENST00000295550 FABP7O15540 132 aa9.17□□□□□ -0.94
COL6A3-201ENST00000295550 TRAF3IP2O43734 574 aaPredicted RBP9.17□□□□□ -0.94
COL6A3-201ENST00000295550 GABARAPO95166 117 aa9.17□□□□□ -0.94
COL6A3-201ENST00000295550 MT-ND4LP03901 98 aa9.17□□□□□ -0.94
COL6A3-201ENST00000295550 CASP6P55212 293 aa9.17□□□□□ -0.94
COL6A3-201ENST00000295550 RAB11AP62491 216 aa9.17□□□□□ -0.94
COL6A3-201ENST00000295550 ZNF92Q03936 586 aa9.17□□□□□ -0.94
COL6A3-201ENST00000295550 S100A8P05109 93 aa9.17□□□□□ -0.94
COL6A3-201ENST00000295550 DAPP51397 102 aa9.17□□□□□ -0.94
COL6A3-201ENST00000295550 SUMO1P63165 101 aaKnown RBP9.17□□□□□ -0.94
COL6A3-201ENST00000295550 GLYR1Q49A26 553 aaPredicted RBP9.17□□□□□ -0.94
COL6A3-201ENST00000295550 EOGTQ5NDL2 527 aa9.17□□□□□ -0.94
COL6A3-201ENST00000295550 SLC6A19Q695T7 634 aa9.17□□□□□ -0.94
COL6A3-201ENST00000295550 TMEM217Q8N7C4 229 aa9.17□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 43.6 ms