RNA–Protein interactions for RNA: ENST00000269138.9

SS18-202, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-202ENST00000269138 C1DQ13901 141 aaKnown RBP11.3□□□□□ -0.6
SS18-202ENST00000269138 LAPTM4AQ15012 233 aa11.3□□□□□ -0.6
SS18-202ENST00000269138 POU4F3Q15319 338 aa11.3□□□□□ -0.6
SS18-202ENST00000269138 SP5Q6BEB4 398 aaPredicted RBP11.3□□□□□ -0.6
SS18-202ENST00000269138 OR2T5Q6IEZ7 315 aa11.3□□□□□ -0.6
SS18-202ENST00000269138 CASP12Q6UXS9 341 aa11.3□□□□□ -0.6
SS18-202ENST00000269138 RRM2BQ7LG56 351 aa11.3□□□□□ -0.6
SS18-202ENST00000269138 AAED1Q7RTV5 226 aa11.3□□□□□ -0.6
SS18-202ENST00000269138 NANOGNBQ7Z5D8 188 aa11.3□□□□□ -0.6
SS18-202ENST00000269138 ZNF100Q8IYN0 542 aa11.3□□□□□ -0.6
SS18-202ENST00000269138 OR4C15Q8NGM1 316 aa11.3□□□□□ -0.6
SS18-202ENST00000269138 OR2T29Q8NH02 315 aa11.3□□□□□ -0.6
SS18-202ENST00000269138 MOSPD2Q8NHP6 518 aa11.3□□□□□ -0.6
SS18-202ENST00000269138 LIPHQ8WWY8 451 aa11.3□□□□□ -0.6
SS18-202ENST00000269138 TMEM45BQ96B21 275 aa11.3□□□□□ -0.6
SS18-202ENST00000269138 FAM46AQ96IP4 442 aaKnown RBP11.3□□□□□ -0.6
SS18-202ENST00000269138 RSRC1Q96IZ7 334 aaKnown RBP11.3□□□□□ -0.6
SS18-202ENST00000269138 TXNDC15Q96J42 360 aa11.3□□□□□ -0.6
SS18-202ENST00000269138 GPA33Q99795 319 aa11.3□□□□□ -0.6
SS18-202ENST00000269138 CCM2LQ9NUG4 571 aaPredicted RBP11.3□□□□□ -0.6
SS18-202ENST00000269138 EFCAB9A8MZ26 197 aa11.29□□□□□ -0.6
SS18-202ENST00000269138 TNFRSF11BO00300 401 aa11.29□□□□□ -0.6
SS18-202ENST00000269138 FKBP6O75344 327 aa11.29□□□□□ -0.6
SS18-202ENST00000269138 SAGP10523 405 aaPredicted RBP11.29□□□□□ -0.6
SS18-202ENST00000269138 OMPP47874 163 aa11.29□□□□□ -0.6
SS18-202ENST00000269138 SELENOPP49908 381 aa11.29□□□□□ -0.6
SS18-202ENST00000269138 HMGA2P52926 109 aa11.29□□□□□ -0.6
SS18-202ENST00000269138 RPL18Q07020 188 aaKnown RBP11.29□□□□□ -0.6
SS18-202ENST00000269138 ZP4Q12836 540 aa11.29□□□□□ -0.6
SS18-202ENST00000269138 YTHDF3Q7Z739 585 aaKnown RBP11.29□□□□□ -0.6
SS18-202ENST00000269138 ZER1Q7Z7L7 766 aa11.29□□□□□ -0.6
SS18-202ENST00000269138 UEVLDQ8IX04 471 aa11.29□□□□□ -0.6
SS18-202ENST00000269138 PAPD5Q8NDF8 572 aaKnown RBP11.29□□□□□ -0.6
SS18-202ENST00000269138 OR13C2Q8NGS9 318 aa11.29□□□□□ -0.6
SS18-202ENST00000269138 OR51A7Q8NH64 312 aa11.29□□□□□ -0.6
SS18-202ENST00000269138 APH1AQ96BI3 265 aa11.29□□□□□ -0.6
SS18-202ENST00000269138 TNFRSF13CQ96RJ3 184 aa11.29□□□□□ -0.6
SS18-202ENST00000269138 MED29Q9NX70 200 aa11.29□□□□□ -0.6
SS18-202ENST00000269138 TMCC3Q9ULS5 477 aa11.29□□□□□ -0.6
SS18-202ENST00000269138 U3KQV3 271 aa11.29□□□□□ -0.6
SS18-202ENST00000269138 TRAV27A0A087WT01 109 aa11.28□□□□□ -0.6
SS18-202ENST00000269138 HTR3EA5X5Y0 456 aa11.28□□□□□ -0.6
SS18-202ENST00000269138 RNF13O43567 381 aa11.28□□□□□ -0.6
SS18-202ENST00000269138 KRT36O76013 467 aa11.28□□□□□ -0.6
SS18-202ENST00000269138 ZNF432O94892 652 aa11.28□□□□□ -0.6
SS18-202ENST00000269138 CST1P01037 141 aa11.28□□□□□ -0.6
SS18-202ENST00000269138 F13BP05160 661 aa11.28□□□□□ -0.6
SS18-202ENST00000269138 TSPAN19P0C672 248 aa11.28□□□□□ -0.6
SS18-202ENST00000269138 IGFBP2P18065 325 aa11.28□□□□□ -0.6
SS18-202ENST00000269138 CD79BP40259 229 aa11.28□□□□□ -0.6
SS18-202ENST00000269138 IST1P53990 364 aa11.28□□□□□ -0.6
SS18-202ENST00000269138 FOXG1P55316 489 aaPredicted RBP11.28□□□□□ -0.6
SS18-202ENST00000269138 POU3F1Q03052 451 aaPredicted RBP11.28□□□□□ -0.6
SS18-202ENST00000269138 KPNB1Q14974 876 aaKnown RBP11.28□□□□□ -0.6
SS18-202ENST00000269138 TSC22D1Q15714 1073 aa11.28□□□□□ -0.6
SS18-202ENST00000269138 TSPO2Q5TGU0 170 aa11.28□□□□□ -0.6
SS18-202ENST00000269138 NIPAL3Q6P499 406 aa11.28□□□□□ -0.6
SS18-202ENST00000269138 TMPRSS11FQ6ZWK6 438 aa11.28□□□□□ -0.6
SS18-202ENST00000269138 PXKQ7Z7A4 578 aa11.28□□□□□ -0.6
SS18-202ENST00000269138 STK32CQ86UX6 486 aa11.28□□□□□ -0.6
SS18-202ENST00000269138 CDK20Q8IZL9 346 aa11.28□□□□□ -0.6
SS18-202ENST00000269138 GABRG1Q8N1C3 465 aa11.28□□□□□ -0.6
SS18-202ENST00000269138 EMC6Q9BV81 110 aa11.28□□□□□ -0.6
SS18-202ENST00000269138 FANCFQ9NPI8 374 aa11.28□□□□□ -0.6
SS18-202ENST00000269138 SLC7A10Q9NS82 523 aa11.28□□□□□ -0.6
SS18-202ENST00000269138 PARPBPQ9NWS1 579 aa11.28□□□□□ -0.6
SS18-202ENST00000269138 SAMHD1Q9Y3Z3 626 aaKnown RBP11.28□□□□□ -0.6
SS18-202ENST00000269138 NOX1Q9Y5S8 564 aa11.28□□□□□ -0.6
SS18-202ENST00000269138 FREM1Q5H8C1 2179 aa11.27□□□□□ -0.6
SS18-202ENST00000269138 PTPN13Q12923 2485 aa11.27□□□□□ -0.61
SS18-202ENST00000269138 KLF4O43474 513 aa11.27□□□□□ -0.61
SS18-202ENST00000269138 OR10H3O60404 316 aa11.27□□□□□ -0.61
SS18-202ENST00000269138 TIPRLO75663 272 aa11.27□□□□□ -0.61
SS18-202ENST00000269138 ADAP00813 363 aa11.27□□□□□ -0.61
SS18-202ENST00000269138 POU2F1P14859 743 aa11.27□□□□□ -0.61
SS18-202ENST00000269138 IFNGR1P15260 489 aa11.27□□□□□ -0.61
SS18-202ENST00000269138 ZNF26P17031 533 aaPredicted RBP11.27□□□□□ -0.61
SS18-202ENST00000269138 CCKARP32238 428 aa11.27□□□□□ -0.61
SS18-202ENST00000269138 ZSCAN26Q16670 478 aa11.27□□□□□ -0.61
SS18-202ENST00000269138 CARD17Q5XLA6 110 aa11.27□□□□□ -0.61
SS18-202ENST00000269138 FBXW9Q5XUX1 488 aa11.27□□□□□ -0.61
SS18-202ENST00000269138 ANKRD34AQ69YU3 496 aa11.27□□□□□ -0.61
SS18-202ENST00000269138 STAC2Q6ZMT1 411 aa11.27□□□□□ -0.61
SS18-202ENST00000269138 MEX3BQ6ZN04 569 aaKnown RBP11.27□□□□□ -0.61
SS18-202ENST00000269138 BEND4Q6ZU67 534 aa11.27□□□□□ -0.61
SS18-202ENST00000269138 SLC35D2Q76EJ3 337 aa11.27□□□□□ -0.61
SS18-202ENST00000269138 TMEM179BQ7Z7N9 219 aa11.27□□□□□ -0.61
SS18-202ENST00000269138 OAFQ86UD1 273 aa11.27□□□□□ -0.61
SS18-202ENST00000269138 IGFN1Q86VF2 1251 aa11.27□□□□□ -0.61
SS18-202ENST00000269138 CXorf67Q86X51 503 aaPredicted RBP11.27□□□□□ -0.61
SS18-202ENST00000269138 UBE2J2Q8N2K1 259 aa11.27□□□□□ -0.61
SS18-202ENST00000269138 ACBD4Q8NC06 268 aa11.27□□□□□ -0.61
SS18-202ENST00000269138 ANKK1Q8NFD2 765 aa11.27□□□□□ -0.61
SS18-202ENST00000269138 OR9Q2Q8NGE9 314 aa11.27□□□□□ -0.61
SS18-202ENST00000269138 OR2M2Q96R28 347 aa11.27□□□□□ -0.61
SS18-202ENST00000269138 ENKD1Q9H0I2 346 aa11.27□□□□□ -0.61
SS18-202ENST00000269138 REEP1Q9H902 201 aa11.27□□□□□ -0.61
SS18-202ENST00000269138 MCCC2Q9HCC0 563 aa11.27□□□□□ -0.61
SS18-202ENST00000269138 ELOVL5Q9NYP7 299 aa11.27□□□□□ -0.61
SS18-202ENST00000269138 TMEM5Q9Y2B1 443 aa11.27□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms