RNA–Protein interactions for RNA: ENST00000265560.8

USP4-201, Transcript of ubiquitin specific peptidase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP4, Length 3,126 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-201ENST00000265560 HES7Q9BYE0 225 aa14.87□□□□□ -0.03
USP4-201ENST00000265560 TPK1Q9H3S4 243 aa14.87□□□□□ -0.03
USP4-201ENST00000265560 FKRPQ9H9S5 495 aa14.87□□□□□ -0.03
USP4-201ENST00000265560 MRPS18AQ9NVS2 196 aaKnown RBP14.87□□□□□ -0.03
USP4-201ENST00000265560 ZNF229Q9UJW7 825 aa14.87□□□□□ -0.03
USP4-201ENST00000265560 A0A1W2PQL4 384 aaPredicted RBP14.87□□□□□ -0.03
USP4-201ENST00000265560 SLC35F4A4IF30 521 aa14.87□□□□□ -0.03
USP4-201ENST00000265560 E9PI62 339 aa14.87□□□□□ -0.03
USP4-201ENST00000265560 TFP02787 698 aa14.87□□□□□ -0.03
USP4-201ENST00000265560 CYC1P08574 325 aa14.87□□□□□ -0.03
USP4-201ENST00000265560 RAB40ALP0C0E4 278 aa14.87□□□□□ -0.03
USP4-201ENST00000265560 SBK2P0C263 348 aa14.87□□□□□ -0.03
USP4-201ENST00000265560 TSPAN19P0C672 248 aa14.87□□□□□ -0.03
USP4-201ENST00000265560 SPI1P17947 270 aa14.87□□□□□ -0.03
USP4-201ENST00000265560 TGM4P49221 684 aa14.87□□□□□ -0.03
USP4-201ENST00000265560 PHC2Q8IXK0 858 aa14.87□□□□□ -0.03
USP4-201ENST00000265560 ACBD7Q8N6N7 88 aa14.87□□□□□ -0.03
USP4-201ENST00000265560 OR5B2Q96R09 309 aa14.87□□□□□ -0.03
USP4-201ENST00000265560 SDHAF3Q9NRP4 125 aa14.87□□□□□ -0.03
USP4-201ENST00000265560 IMPDH2P12268 514 aa14.86□□□□□ -0.03
USP4-201ENST00000265560 KRR1Q13601 381 aaKnown RBP14.86□□□□□ -0.03
USP4-201ENST00000265560 ETFDHQ16134 617 aa14.86□□□□□ -0.03
USP4-201ENST00000265560 TMEM176BQ3YBM2 270 aaPredicted RBP14.86□□□□□ -0.03
USP4-201ENST00000265560 OR5J2Q8NH18 312 aa14.86□□□□□ -0.03
USP4-201ENST00000265560 RNF138Q8WVD3 245 aa14.86□□□□□ -0.03
USP4-201ENST00000265560 ST8SIA1Q92185 356 aa14.86□□□□□ -0.03
USP4-201ENST00000265560 DCLRE1CQ96SD1 692 aaKnown RBP14.86□□□□□ -0.03
USP4-201ENST00000265560 TIMP4Q99727 224 aa14.86□□□□□ -0.03
USP4-201ENST00000265560 EMC6Q9BV81 110 aa14.86□□□□□ -0.03
USP4-201ENST00000265560 ALG8Q9BVK2 526 aa14.86□□□□□ -0.03
USP4-201ENST00000265560 TMED9Q9BVK6 235 aa14.86□□□□□ -0.03
USP4-201ENST00000265560 DCSTAMPQ9H295 470 aa14.86□□□□□ -0.03
USP4-201ENST00000265560 MED29Q9NX70 200 aa14.86□□□□□ -0.03
USP4-201ENST00000265560 GRIP1Q9Y3R0 1128 aa14.86□□□□□ -0.03
USP4-201ENST00000265560 SLC22A31A6NKX4 558 aa14.86□□□□□ -0.03
USP4-201ENST00000265560 J3QLW9 94 aa14.86□□□□□ -0.03
USP4-201ENST00000265560 HPP00738 406 aa14.86□□□□□ -0.03
USP4-201ENST00000265560 IGHEP01854 428 aa14.86□□□□□ -0.03
USP4-201ENST00000265560 ZNF19P17023 458 aa14.86□□□□□ -0.03
USP4-201ENST00000265560 NOVA1P51513 510 aaKnown RBP14.86□□□□□ -0.03
USP4-201ENST00000265560 OR12D2P58182 307 aa14.86□□□□□ -0.03
USP4-201ENST00000265560 RPS25P62851 125 aaKnown RBP14.86□□□□□ -0.03
USP4-201ENST00000265560 MXD1Q05195 221 aa14.86□□□□□ -0.03
USP4-201ENST00000265560 MYBPHQ13203 477 aa14.86□□□□□ -0.03
USP4-201ENST00000265560 ASCL5Q7RTU5 278 aa14.86□□□□□ -0.03
USP4-201ENST00000265560 PLCZ1Q86YW0 608 aa14.86□□□□□ -0.03
USP4-201ENST00000265560 C1GALT1C1Q96EU7 318 aa14.86□□□□□ -0.03
USP4-201ENST00000265560 BAIAP2Q9UQB8 552 aa14.86□□□□□ -0.03
USP4-201ENST00000265560 EXOGQ9Y2C4 368 aaKnown RBP14.86□□□□□ -0.03
USP4-201ENST00000265560 SIRT4Q9Y6E7 314 aaPredicted RBP14.86□□□□□ -0.03
USP4-201ENST00000265560 PMF1-BGLAPU3KQ54 211 aa14.86□□□□□ -0.03
USP4-201ENST00000265560 DPP4P27487 766 aa14.86□□□□□ -0.03
USP4-201ENST00000265560 SDHAP31040 664 aa14.86□□□□□ -0.03
USP4-201ENST00000265560 PON3Q15166 354 aa14.86□□□□□ -0.03
USP4-201ENST00000265560 TP53I3Q53FA7 332 aa14.86□□□□□ -0.03
USP4-201ENST00000265560 GPAT4Q86UL3 456 aa14.86□□□□□ -0.03
USP4-201ENST00000265560 OR6V1Q8N148 313 aa14.86□□□□□ -0.03
USP4-201ENST00000265560 DDOQ99489 341 aa14.86□□□□□ -0.03
USP4-201ENST00000265560 ASPNQ9BXN1 380 aa14.86□□□□□ -0.03
USP4-201ENST00000265560 ARPC3O15145 178 aa14.85□□□□□ -0.03
USP4-201ENST00000265560 RAMP1O60894 148 aa14.85□□□□□ -0.03
USP4-201ENST00000265560 RFPL3SP0C7P2 107 aa14.85□□□□□ -0.03
USP4-201ENST00000265560 ACVR1BP36896 505 aa14.85□□□□□ -0.03
USP4-201ENST00000265560 DCAF10Q5QP82 559 aa14.85□□□□□ -0.03
USP4-201ENST00000265560 RAET1LQ5VY80 246 aa14.85□□□□□ -0.03
USP4-201ENST00000265560 GLRX5Q86SX6 157 aa14.85□□□□□ -0.03
USP4-201ENST00000265560 YRDCQ86U90 279 aaKnown RBP14.85□□□□□ -0.03
USP4-201ENST00000265560 ZNF227Q86WZ6 799 aa14.85□□□□□ -0.03
USP4-201ENST00000265560 TXNDC15Q96J42 360 aa14.85□□□□□ -0.03
USP4-201ENST00000265560 CCNL2Q96S94 520 aaPredicted RBP14.85□□□□□ -0.03
USP4-201ENST00000265560 NUAK2Q9H093 628 aa14.85□□□□□ -0.03
USP4-201ENST00000265560 C12orf10Q9HB07 376 aa14.85□□□□□ -0.03
USP4-201ENST00000265560 DEPPQ9NTK1 212 aa14.85□□□□□ -0.03
USP4-201ENST00000265560 ZNF814B7Z6K7 855 aa14.85□□□□□ -0.03
USP4-201ENST00000265560 FTCDNL1E5RQL4 147 aa14.85□□□□□ -0.03
USP4-201ENST00000265560 J3QRE1 110 aa14.85□□□□□ -0.03
USP4-201ENST00000265560 PLPP3O14495 311 aa14.85□□□□□ -0.03
USP4-201ENST00000265560 TERTO14746 1132 aaKnown RBP14.85□□□□□ -0.03
USP4-201ENST00000265560 SERPINA7P05543 415 aa14.85□□□□□ -0.03
USP4-201ENST00000265560 APOBEC1P41238 236 aaKnown RBP14.85□□□□□ -0.03
USP4-201ENST00000265560 SERPINB10P48595 397 aa14.85□□□□□ -0.03
USP4-201ENST00000265560 ENTPD1P49961 510 aa14.85□□□□□ -0.03
USP4-201ENST00000265560 PSPHP78330 225 aa14.85□□□□□ -0.03
USP4-201ENST00000265560 SLC15A4Q8N697 577 aa14.85□□□□□ -0.03
USP4-201ENST00000265560 OR1J4Q8NGS1 313 aa14.85□□□□□ -0.03
USP4-201ENST00000265560 PAQR8Q8TEZ7 354 aa14.85□□□□□ -0.03
USP4-201ENST00000265560 LIPHQ8WWY8 451 aa14.85□□□□□ -0.03
USP4-201ENST00000265560 HDHD5Q9BXW7 423 aa14.85□□□□□ -0.03
USP4-201ENST00000265560 PTGES2Q9H7Z7 377 aa14.85□□□□□ -0.03
USP4-201ENST00000265560 EXOSC1Q9Y3B2 195 aaKnown RBP14.85□□□□□ -0.03
USP4-201ENST00000265560 CDK4P11802 303 aa14.84□□□□□ -0.03
USP4-201ENST00000265560 ICAM2P13598 275 aa14.84□□□□□ -0.03
USP4-201ENST00000265560 GTF2E2P29084 291 aaKnown RBP14.84□□□□□ -0.03
USP4-201ENST00000265560 TLE3Q04726 772 aa14.84□□□□□ -0.03
USP4-201ENST00000265560 NXPE2Q96DL1 559 aa14.84□□□□□ -0.03
USP4-201ENST00000265560 ALG12Q9BV10 488 aa14.84□□□□□ -0.03
USP4-201ENST00000265560 TSPAN10Q9H1Z9 355 aaPredicted RBP14.84□□□□□ -0.03
USP4-201ENST00000265560 INIPQ9NRY2 104 aa14.84□□□□□ -0.03
USP4-201ENST00000265560 COPS3Q9UNS2 423 aa14.84□□□□□ -0.03
USP4-201ENST00000265560 PTPRBP23467 1997 aa14.84□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms