RNA–Protein interactions for RNA: ENST00000263630.12

CCDC88A-201, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,667 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-201ENST00000263630 STYXL1Q9Y6J8 313 aa13□□□□□ -0.33
CCDC88A-201ENST00000263630 MROH2AA6NES4 1674 aa13□□□□□ -0.33
CCDC88A-201ENST00000263630 SULT1C4O75897 302 aa13□□□□□ -0.33
CCDC88A-201ENST00000263630 NAGAP17050 411 aa13□□□□□ -0.33
CCDC88A-201ENST00000263630 SPCS2Q15005 226 aa13□□□□□ -0.33
CCDC88A-201ENST00000263630 RNF212Q495C1 297 aa13□□□□□ -0.33
CCDC88A-201ENST00000263630 HMGN2P46Q86SG4 172 aa13□□□□□ -0.33
CCDC88A-201ENST00000263630 OR4F5Q8NH21 305 aa13□□□□□ -0.33
CCDC88A-201ENST00000263630 RBPMSQ93062 196 aaKnown RBP13□□□□□ -0.33
CCDC88A-201ENST00000263630 OR4F4Q96R69 305 aa13□□□□□ -0.33
CCDC88A-201ENST00000263630 ACTR3CQ9C0K3 210 aaPredicted RBP13□□□□□ -0.33
CCDC88A-201ENST00000263630 POFUT1Q9H488 388 aa13□□□□□ -0.33
CCDC88A-201ENST00000263630 KCNG2Q9UJ96 466 aa13□□□□□ -0.33
CCDC88A-201ENST00000263630 KNL1Q8NG31 2342 aa12.99□□□□□ -0.33
CCDC88A-201ENST00000263630 UQCRFS1P47985 274 aa12.99□□□□□ -0.33
CCDC88A-201ENST00000263630 PSMB2P49721 201 aa12.99□□□□□ -0.33
CCDC88A-201ENST00000263630 SLC25A11Q02978 314 aaKnown RBP12.99□□□□□ -0.33
CCDC88A-201ENST00000263630 BAK1Q16611 211 aa12.99□□□□□ -0.33
CCDC88A-201ENST00000263630 SLC29A1Q99808 456 aa12.99□□□□□ -0.33
CCDC88A-201ENST00000263630 PECRQ9BY49 303 aa12.99□□□□□ -0.33
CCDC88A-201ENST00000263630 DEPDC5O75140 1603 aa12.99□□□□□ -0.33
CCDC88A-201ENST00000263630 FGF4P08620 206 aa12.99□□□□□ -0.33
CCDC88A-201ENST00000263630 ZNF888P0CJ79 500 aaPredicted RBP12.99□□□□□ -0.33
CCDC88A-201ENST00000263630 DOC2AQ14183 400 aa12.99□□□□□ -0.33
CCDC88A-201ENST00000263630 NR0B2Q15466 257 aa12.99□□□□□ -0.33
CCDC88A-201ENST00000263630 PRSS35Q8N3Z0 413 aa12.99□□□□□ -0.33
CCDC88A-201ENST00000263630 ALOXE3Q9BYJ1 711 aa12.99□□□□□ -0.33
CCDC88A-201ENST00000263630 ABCD4O14678 606 aa12.99□□□□□ -0.33
CCDC88A-201ENST00000263630 SELEP16581 610 aa12.99□□□□□ -0.33
CCDC88A-201ENST00000263630 DCAF7P61962 342 aa12.99□□□□□ -0.33
CCDC88A-201ENST00000263630 CMPK2Q5EBM0 449 aa12.99□□□□□ -0.33
CCDC88A-201ENST00000263630 ZNF852Q6ZMS4 543 aa12.99□□□□□ -0.33
CCDC88A-201ENST00000263630 FA2HQ7L5A8 372 aa12.99□□□□□ -0.33
CCDC88A-201ENST00000263630 LRRC56Q8IYG6 542 aaPredicted RBP12.99□□□□□ -0.33
CCDC88A-201ENST00000263630 MENTQ9BUN1 341 aa12.99□□□□□ -0.33
CCDC88A-201ENST00000263630 LY6G5CQ5SRR4 150 aa12.99□□□□□ -0.33
CCDC88A-201ENST00000263630 FCRLAQ7L513 359 aa12.99□□□□□ -0.33
CCDC88A-201ENST00000263630 MISPQ8IVT2 679 aa12.99□□□□□ -0.33
CCDC88A-201ENST00000263630 ZNF724A8MTY0 619 aa12.99□□□□□ -0.33
CCDC88A-201ENST00000263630 ATXN1LP0C7T5 689 aaKnown RBP12.99□□□□□ -0.33
CCDC88A-201ENST00000263630 HTR2CP28335 458 aa12.99□□□□□ -0.33
CCDC88A-201ENST00000263630 VEZF1Q14119 521 aa12.99□□□□□ -0.33
CCDC88A-201ENST00000263630 TBC1D28Q2M2D7 210 aa12.99□□□□□ -0.33
CCDC88A-201ENST00000263630 HBMQ6B0K9 141 aa12.99□□□□□ -0.33
CCDC88A-201ENST00000263630 COMMD6Q7Z4G1 85 aa12.99□□□□□ -0.33
CCDC88A-201ENST00000263630 SCCPDHQ8NBX0 429 aa12.99□□□□□ -0.33
CCDC88A-201ENST00000263630 TMEM163Q8TC26 289 aa12.99□□□□□ -0.33
CCDC88A-201ENST00000263630 ADGRB1O14514 1584 aa12.99□□□□□ -0.33
CCDC88A-201ENST00000263630 RPE65Q16518 533 aa12.99□□□□□ -0.33
CCDC88A-201ENST00000263630 RPS26P11Q5JNZ5 115 aaPredicted RBP12.99□□□□□ -0.33
CCDC88A-201ENST00000263630 OR9Q2Q8NGE9 314 aa12.99□□□□□ -0.33
CCDC88A-201ENST00000263630 OR51A2Q8NGJ7 313 aa12.99□□□□□ -0.33
CCDC88A-201ENST00000263630 FBXL2Q9UKC9 423 aa12.99□□□□□ -0.33
CCDC88A-201ENST00000263630 RALYQ9UKM9 306 aaKnown RBP12.99□□□□□ -0.33
CCDC88A-201ENST00000263630 RCE1Q9Y256 329 aa12.99□□□□□ -0.33
CCDC88A-201ENST00000263630 ZFAND5O76080 213 aa12.99□□□□□ -0.33
CCDC88A-201ENST00000263630 FGF3P11487 239 aaPredicted RBP12.99□□□□□ -0.33
CCDC88A-201ENST00000263630 SLC22A24Q8N4F4 322 aa12.99□□□□□ -0.33
CCDC88A-201ENST00000263630 RTP3Q9BQQ7 232 aa12.99□□□□□ -0.33
CCDC88A-201ENST00000263630 UBQLN4Q9NRR5 601 aa12.99□□□□□ -0.33
CCDC88A-201ENST00000263630 TMEM221A6NGB7 291 aa12.98□□□□□ -0.33
CCDC88A-201ENST00000263630 KDM4EB2RXH2 506 aaPredicted RBP12.98□□□□□ -0.33
CCDC88A-201ENST00000263630 HSD17B6O14756 317 aa12.98□□□□□ -0.33
CCDC88A-201ENST00000263630 DUSP6Q16828 381 aa12.98□□□□□ -0.33
CCDC88A-201ENST00000263630 C9orf152Q5JTZ5 239 aa12.98□□□□□ -0.33
CCDC88A-201ENST00000263630 TSEN54Q7Z6J9 526 aaKnown RBP12.98□□□□□ -0.33
CCDC88A-201ENST00000263630 PARP16Q8N5Y8 322 aa12.98□□□□□ -0.33
CCDC88A-201ENST00000263630 CYB561A3Q8NBI2 242 aa12.98□□□□□ -0.33
CCDC88A-201ENST00000263630 TECTBQ96PL2 329 aa12.98□□□□□ -0.33
CCDC88A-201ENST00000263630 CEP170BQ9Y4F5 1589 aaPredicted RBP12.98□□□□□ -0.33
CCDC88A-201ENST00000263630 C1orf167Q5SNV9 1468 aa12.98□□□□□ -0.33
CCDC88A-201ENST00000263630 CA12O43570 354 aa12.98□□□□□ -0.33
CCDC88A-201ENST00000263630 CTXN2P0C2S0 81 aa12.98□□□□□ -0.33
CCDC88A-201ENST00000263630 CASP3P42574 277 aa12.98□□□□□ -0.33
CCDC88A-201ENST00000263630 KCNQ1P51787 676 aa12.98□□□□□ -0.33
CCDC88A-201ENST00000263630 HCCSP53701 268 aa12.98□□□□□ -0.33
CCDC88A-201ENST00000263630 ERVFC1P60507 584 aa12.98□□□□□ -0.33
CCDC88A-201ENST00000263630 UBE3DQ7Z6J8 389 aa12.98□□□□□ -0.33
CCDC88A-201ENST00000263630 MED18Q9BUE0 208 aa12.98□□□□□ -0.33
CCDC88A-201ENST00000263630 MFSD12Q6NUT3 480 aa12.98□□□□□ -0.33
CCDC88A-201ENST00000263630 DUSP19Q8WTR2 217 aa12.98□□□□□ -0.33
CCDC88A-201ENST00000263630 CAPNS2Q96L46 248 aa12.98□□□□□ -0.33
CCDC88A-201ENST00000263630 GALNT9Q9HCQ5 603 aa12.98□□□□□ -0.33
CCDC88A-201ENST00000263630 MUTYHQ9UIF7 546 aa12.98□□□□□ -0.33
CCDC88A-201ENST00000263630 MOKQ9UQ07 419 aa12.98□□□□□ -0.33
CCDC88A-201ENST00000263630 DSC1Q08554 894 aa12.98□□□□□ -0.33
CCDC88A-201ENST00000263630 FZD1Q9UP38 647 aa12.98□□□□□ -0.33
CCDC88A-201ENST00000263630 IGLON5A6NGN9 336 aa12.98□□□□□ -0.33
CCDC88A-201ENST00000263630 SLC35E2BP0CK96 405 aa12.98□□□□□ -0.33
CCDC88A-201ENST00000263630 OR13C7P0DN81 318 aa12.98□□□□□ -0.33
CCDC88A-201ENST00000263630 KCMF1Q9P0J7 381 aa12.98□□□□□ -0.33
CCDC88A-201ENST00000263630 GIMAP2Q9UG22 337 aa12.98□□□□□ -0.33
CCDC88A-201ENST00000263630 ANKRD26Q9UPS8 1709 aa12.98□□□□□ -0.33
CCDC88A-201ENST00000263630 NUP205Q92621 2012 aa12.98□□□□□ -0.33
CCDC88A-201ENST00000263630 MYOCOSA0A1B0GUC4 107 aa12.98□□□□□ -0.33
CCDC88A-201ENST00000263630 GABRPO00591 440 aa12.98□□□□□ -0.33
CCDC88A-201ENST00000263630 GLAP06280 429 aa12.98□□□□□ -0.33
CCDC88A-201ENST00000263630 GM2AP17900 193 aa12.98□□□□□ -0.33
CCDC88A-201ENST00000263630 S100A4P26447 101 aaKnown RBP12.98□□□□□ -0.33
CCDC88A-201ENST00000263630 PSMB10P40306 273 aa12.98□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms