RNA–Protein interactions for RNA: ENST00000251722.10

USP40-201, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene USP40, Length 5,692 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-201ENST00000251722 RAF1P04049 648 aa11.83□□□□□ -0.52
USP40-201ENST00000251722 SMIM18P0DKX4 95 aa11.83□□□□□ -0.52
USP40-201ENST00000251722 IRS1P35568 1242 aa11.83□□□□□ -0.52
USP40-201ENST00000251722 ARL3P36405 182 aa11.83□□□□□ -0.52
USP40-201ENST00000251722 OPRD1P41143 372 aa11.83□□□□□ -0.52
USP40-201ENST00000251722 ZP2Q05996 745 aa11.83□□□□□ -0.52
USP40-201ENST00000251722 RBM39Q14498 530 aaKnown RBP11.83□□□□□ -0.52
USP40-201ENST00000251722 RPS26P11Q5JNZ5 115 aaPredicted RBP11.83□□□□□ -0.52
USP40-201ENST00000251722 ADGRG3Q86Y34 549 aa11.83□□□□□ -0.52
USP40-201ENST00000251722 CPOQ8IVL8 374 aa11.83□□□□□ -0.52
USP40-201ENST00000251722 FAM83FQ8NEG4 500 aaPredicted RBP11.83□□□□□ -0.52
USP40-201ENST00000251722 OR6M1Q8NGM8 313 aa11.83□□□□□ -0.52
USP40-201ENST00000251722 ADAMTS14Q8WXS8 1223 aa11.83□□□□□ -0.52
USP40-201ENST00000251722 ELP4Q96EB1 424 aa11.83□□□□□ -0.52
USP40-201ENST00000251722 PBX4Q9BYU1 374 aa11.83□□□□□ -0.52
USP40-201ENST00000251722 LAMB1P07942 1786 aa11.83□□□□□ -0.52
USP40-201ENST00000251722 LILRA5A6NI73 299 aa11.83□□□□□ -0.52
USP40-201ENST00000251722 K7EPK0 472 aa11.83□□□□□ -0.52
USP40-201ENST00000251722 IL3RAP26951 378 aa11.83□□□□□ -0.52
USP40-201ENST00000251722 PRSS3P35030 304 aa11.83□□□□□ -0.52
USP40-201ENST00000251722 APOBEC1P41238 236 aaKnown RBP11.83□□□□□ -0.52
USP40-201ENST00000251722 OR1D4P47884 311 aa11.83□□□□□ -0.52
USP40-201ENST00000251722 EXOSC7Q15024 291 aaKnown RBP11.83□□□□□ -0.52
USP40-201ENST00000251722 PLGLAQ15195 96 aa11.83□□□□□ -0.52
USP40-201ENST00000251722 TPRA1Q86W33 373 aa11.83□□□□□ -0.52
USP40-201ENST00000251722 FAM71E2Q8N5Q1 922 aa11.83□□□□□ -0.52
USP40-201ENST00000251722 SYT14Q8NB59 555 aa11.83□□□□□ -0.52
USP40-201ENST00000251722 OR52D1Q9H346 318 aa11.83□□□□□ -0.52
USP40-201ENST00000251722 TM7SF3Q9NS93 570 aa11.83□□□□□ -0.52
USP40-201ENST00000251722 MYH9P35579 1960 aaKnown RBP11.83□□□□□ -0.52
USP40-201ENST00000251722 ST8SIA5O15466 376 aa11.83□□□□□ -0.52
USP40-201ENST00000251722 FABP7O15540 132 aa11.83□□□□□ -0.52
USP40-201ENST00000251722 SERPINA5P05154 406 aa11.83□□□□□ -0.52
USP40-201ENST00000251722 CAMLGP49069 296 aa11.83□□□□□ -0.52
USP40-201ENST00000251722 HCCSP53701 268 aa11.83□□□□□ -0.52
USP40-201ENST00000251722 LAPTM4AQ15012 233 aa11.83□□□□□ -0.52
USP40-201ENST00000251722 CLLU1Q5K131 121 aa11.83□□□□□ -0.52
USP40-201ENST00000251722 VTCN1Q7Z7D3 282 aa11.83□□□□□ -0.52
USP40-201ENST00000251722 CD163Q86VB7 1156 aa11.83□□□□□ -0.52
USP40-201ENST00000251722 ISL2Q96A47 359 aa11.83□□□□□ -0.52
USP40-201ENST00000251722 DDX31Q9H8H2 851 aaKnown RBP11.83□□□□□ -0.52
USP40-201ENST00000251722 GSKIPQ9P0R6 139 aa11.83□□□□□ -0.52
USP40-201ENST00000251722 NKX6-3A6NJ46 265 aa11.82□□□□□ -0.52
USP40-201ENST00000251722 UTS2O95399 124 aa11.82□□□□□ -0.52
USP40-201ENST00000251722 STSP08842 583 aa11.82□□□□□ -0.52
USP40-201ENST00000251722 DLX5P56178 289 aa11.82□□□□□ -0.52
USP40-201ENST00000251722 CARD18P57730 90 aa11.82□□□□□ -0.52
USP40-201ENST00000251722 C3orf38Q5JPI3 329 aa11.82□□□□□ -0.52
USP40-201ENST00000251722 PLAG1Q6DJT9 500 aa11.82□□□□□ -0.52
USP40-201ENST00000251722 ABHD17CQ6PCB6 329 aa11.82□□□□□ -0.52
USP40-201ENST00000251722 KLHDC8BQ8IXV7 354 aa11.82□□□□□ -0.52
USP40-201ENST00000251722 DTWD1Q8N5C7 304 aa11.82□□□□□ -0.52
USP40-201ENST00000251722 POC1BQ8TC44 478 aa11.82□□□□□ -0.52
USP40-201ENST00000251722 MUL1Q969V5 352 aa11.82□□□□□ -0.52
USP40-201ENST00000251722 NEURL3Q96EH8 262 aa11.82□□□□□ -0.52
USP40-201ENST00000251722 INTS6Q9UL03 887 aaKnown RBP11.82□□□□□ -0.52
USP40-201ENST00000251722 V9GYS6 101 aa11.82□□□□□ -0.52
USP40-201ENST00000251722 NSA2O95478 260 aaKnown RBP11.82□□□□□ -0.52
USP40-201ENST00000251722 GLB1P16278 677 aa11.82□□□□□ -0.52
USP40-201ENST00000251722 JUNBP17275 347 aaPredicted RBP11.82□□□□□ -0.52
USP40-201ENST00000251722 AKR1C2P52895 323 aa11.82□□□□□ -0.52
USP40-201ENST00000251722 GUK1Q16774 197 aa11.82□□□□□ -0.52
USP40-201ENST00000251722 CAMKMTQ7Z624 323 aa11.82□□□□□ -0.52
USP40-201ENST00000251722 CASTOR1Q8WTX7 329 aa11.82□□□□□ -0.52
USP40-201ENST00000251722 SARAFQ96BY9 339 aa11.82□□□□□ -0.52
USP40-201ENST00000251722 SORCS2Q96PQ0 1159 aa11.82□□□□□ -0.52
USP40-201ENST00000251722 DCLRE1CQ96SD1 692 aaKnown RBP11.82□□□□□ -0.52
USP40-201ENST00000251722 ELF4Q99607 663 aaPredicted RBP11.82□□□□□ -0.52
USP40-201ENST00000251722 TCRBV5S1A1TA0A578 114 aa11.82□□□□□ -0.52
USP40-201ENST00000251722 SLC5A10A0PJK1 596 aa11.82□□□□□ -0.52
USP40-201ENST00000251722 C20orf202A1L168 122 aa11.82□□□□□ -0.52
USP40-201ENST00000251722 LRRC30A6NM36 301 aa11.82□□□□□ -0.52
USP40-201ENST00000251722 PRRG2O14669 202 aa11.82□□□□□ -0.52
USP40-201ENST00000251722 CSNK1G2P78368 415 aa11.82□□□□□ -0.52
USP40-201ENST00000251722 TMEM150AQ86TG1 271 aa11.82□□□□□ -0.52
USP40-201ENST00000251722 ZFP82Q8N141 532 aa11.82□□□□□ -0.52
USP40-201ENST00000251722 MSI2Q96DH6 328 aaKnown RBP11.82□□□□□ -0.52
USP40-201ENST00000251722 DCBLD2Q96PD2 775 aa11.82□□□□□ -0.52
USP40-201ENST00000251722 SORT1Q99523 831 aa11.82□□□□□ -0.52
USP40-201ENST00000251722 C1orf198Q9H425 327 aa11.82□□□□□ -0.52
USP40-201ENST00000251722 PPP1R14DQ9NXH3 145 aa11.82□□□□□ -0.52
USP40-201ENST00000251722 CCDC187A0A096LP49 1063 aa11.82□□□□□ -0.52
USP40-201ENST00000251722 A0A0A6YYH2 397 aa11.82□□□□□ -0.52
USP40-201ENST00000251722 A6NJ64 397 aa11.82□□□□□ -0.52
USP40-201ENST00000251722 METTL15A6NJ78 407 aa11.82□□□□□ -0.52
USP40-201ENST00000251722 LINC01387J3KSC0 135 aa11.82□□□□□ -0.52
USP40-201ENST00000251722 DSCR3O14972 297 aa11.82□□□□□ -0.52
USP40-201ENST00000251722 NFYAP23511 347 aaPredicted RBP11.82□□□□□ -0.52
USP40-201ENST00000251722 ACVR1Q04771 509 aa11.82□□□□□ -0.52
USP40-201ENST00000251722 GPR50Q13585 617 aa11.82□□□□□ -0.52
USP40-201ENST00000251722 RPL22L1Q6P5R6 122 aaKnown RBP11.82□□□□□ -0.52
USP40-201ENST00000251722 Q6ZNB5 142 aa11.82□□□□□ -0.52
USP40-201ENST00000251722 TIPARPQ7Z3E1 657 aaKnown RBP11.82□□□□□ -0.52
USP40-201ENST00000251722 CLEC14AQ86T13 490 aa11.82□□□□□ -0.52
USP40-201ENST00000251722 CELF2-AS1Q8N7Q2 184 aa11.82□□□□□ -0.52
USP40-201ENST00000251722 NPRL2Q8WTW4 380 aa11.82□□□□□ -0.52
USP40-201ENST00000251722 PHYHIPQ92561 330 aa11.82□□□□□ -0.52
USP40-201ENST00000251722 MAL2Q969L2 176 aa11.82□□□□□ -0.52
USP40-201ENST00000251722 VN1R3Q9BXE9 311 aa11.82□□□□□ -0.52
USP40-201ENST00000251722 PCDHGA5Q9Y5G8 931 aa11.82□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 87.1 ms