RNA–Protein interactions for RNA: ENST00000637578.1

CLN3-260, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,577 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-260ENST00000637578 A0A1B0GWA3 101 aa16.94■□□□□ 0.3
CLN3-260ENST00000637578 OR5H1A6NKK0 313 aa16.94■□□□□ 0.3
CLN3-260ENST00000637578 M0R3H8 397 aa16.94■□□□□ 0.3
CLN3-260ENST00000637578 EBAG9O00559 213 aa16.94■□□□□ 0.3
CLN3-260ENST00000637578 TPST2O60704 377 aa16.94■□□□□ 0.3
CLN3-260ENST00000637578 VAMP5O95183 116 aa16.94■□□□□ 0.3
CLN3-260ENST00000637578 LGI1O95970 557 aa16.94■□□□□ 0.3
CLN3-260ENST00000637578 FOXD4Q12950 439 aaPredicted RBP16.94■□□□□ 0.3
CLN3-260ENST00000637578 PPA1Q15181 289 aa16.94■□□□□ 0.3
CLN3-260ENST00000637578 ZNF611Q8N823 705 aa16.94■□□□□ 0.3
CLN3-260ENST00000637578 FAM162AQ96A26 154 aa16.94■□□□□ 0.3
CLN3-260ENST00000637578 CCL19Q99731 98 aa16.94■□□□□ 0.3
CLN3-260ENST00000637578 ARHGDIGQ99819 225 aa16.94■□□□□ 0.3
CLN3-260ENST00000637578 ESRP2Q9H6T0 727 aaKnown RBP16.94■□□□□ 0.3
CLN3-260ENST00000637578 ADPRHL2Q9NX46 363 aa16.94■□□□□ 0.3
CLN3-260ENST00000637578 TESQ9UGI8 421 aaKnown RBP16.94■□□□□ 0.3
CLN3-260ENST00000637578 MAGEL2Q9UJ55 1249 aa16.94■□□□□ 0.3
CLN3-260ENST00000637578 SNX13Q9Y5W8 968 aa16.94■□□□□ 0.3
CLN3-260ENST00000637578 DPRXA6NFQ7 191 aa16.94■□□□□ 0.3
CLN3-260ENST00000637578 ELOA3DA6NLF2 546 aaPredicted RBP16.94■□□□□ 0.3
CLN3-260ENST00000637578 HS3ST1O14792 307 aa16.94■□□□□ 0.3
CLN3-260ENST00000637578 ARPC2O15144 300 aa16.94■□□□□ 0.3
CLN3-260ENST00000637578 SERPINA1P01009 418 aa16.94■□□□□ 0.3
CLN3-260ENST00000637578 C8BP07358 591 aa16.94■□□□□ 0.3
CLN3-260ENST00000637578 ITGA5P08648 1049 aa16.94■□□□□ 0.3
CLN3-260ENST00000637578 PNMTP11086 282 aa16.94■□□□□ 0.3
CLN3-260ENST00000637578 FOXG1P55316 489 aaPredicted RBP16.94■□□□□ 0.3
CLN3-260ENST00000637578 RGS8P57771 180 aaPredicted RBP16.94■□□□□ 0.3
CLN3-260ENST00000637578 FAPQ12884 760 aa16.94■□□□□ 0.3
CLN3-260ENST00000637578 NRF1Q16656 503 aa16.94■□□□□ 0.3
CLN3-260ENST00000637578 ELOA3BQ3SY89 546 aa16.94■□□□□ 0.3
CLN3-260ENST00000637578 ULK3Q6PHR2 472 aa16.94■□□□□ 0.3
CLN3-260ENST00000637578 C5orf46Q6UWT4 87 aa16.94■□□□□ 0.3
CLN3-260ENST00000637578 CASP12Q6UXS9 341 aa16.94■□□□□ 0.3
CLN3-260ENST00000637578 CCDC121Q6ZUS5 278 aa16.94■□□□□ 0.3
CLN3-260ENST00000637578 WFDC11Q8NEX6 87 aa16.94■□□□□ 0.3
CLN3-260ENST00000637578 ELOA3Q8NG57 546 aa16.94■□□□□ 0.3
CLN3-260ENST00000637578 OR52E4Q8NGH9 312 aa16.94■□□□□ 0.3
CLN3-260ENST00000637578 SLC38A4Q969I6 547 aa16.94■□□□□ 0.3
CLN3-260ENST00000637578 MUCL1Q96DR8 90 aa16.94■□□□□ 0.3
CLN3-260ENST00000637578 KTI12Q96EK9 354 aaPredicted RBP16.94■□□□□ 0.3
CLN3-260ENST00000637578 ZNF385AQ96PM9 386 aaKnown RBP16.94■□□□□ 0.3
CLN3-260ENST00000637578 PRR14Q9BWN1 585 aa16.94■□□□□ 0.3
CLN3-260ENST00000637578 SLC7A10Q9NS82 523 aa16.94■□□□□ 0.3
CLN3-260ENST00000637578 RPS6KB2Q9UBS0 482 aa16.94■□□□□ 0.3
CLN3-260ENST00000637578 BAG5Q9UL15 447 aa16.94■□□□□ 0.3
CLN3-260ENST00000637578 RNF115Q9Y4L5 304 aa16.94■□□□□ 0.3
CLN3-260ENST00000637578 IGKV1D-42A0A075B6H8 117 aa16.93■□□□□ 0.3
CLN3-260ENST00000637578 SMPD2O60906 423 aa16.93■□□□□ 0.3
CLN3-260ENST00000637578 GMNNO75496 209 aa16.93■□□□□ 0.3
CLN3-260ENST00000637578 AHSA1O95433 338 aa16.93■□□□□ 0.3
CLN3-260ENST00000637578 PAX1P15863 534 aa16.93■□□□□ 0.3
CLN3-260ENST00000637578 TNFRSF1BP20333 461 aa16.93■□□□□ 0.3
CLN3-260ENST00000637578 RASSF2P50749 326 aa16.93■□□□□ 0.3
CLN3-260ENST00000637578 NCALDP61601 193 aa16.93■□□□□ 0.3
CLN3-260ENST00000637578 NKX6-1P78426 367 aaPredicted RBP16.93■□□□□ 0.3
CLN3-260ENST00000637578 GABRA6Q16445 453 aa16.93■□□□□ 0.3
CLN3-260ENST00000637578 ALG10BQ5I7T1 473 aa16.93■□□□□ 0.3
CLN3-260ENST00000637578 TSPO2Q5TGU0 170 aa16.93■□□□□ 0.3
CLN3-260ENST00000637578 SHEQ5VZ18 495 aa16.93■□□□□ 0.3
CLN3-260ENST00000637578 TMEM225Q6GV28 225 aa16.93■□□□□ 0.3
CLN3-260ENST00000637578 OR7E24Q6IFN5 339 aa16.93■□□□□ 0.3
CLN3-260ENST00000637578 ALKBH2Q6NS38 261 aa16.93■□□□□ 0.3
CLN3-260ENST00000637578 CREB3L2Q70SY1 520 aa16.93■□□□□ 0.3
CLN3-260ENST00000637578 CBLL1Q75N03 491 aa16.93■□□□□ 0.3
CLN3-260ENST00000637578 OR4D11Q8NGI4 311 aa16.93■□□□□ 0.3
CLN3-260ENST00000637578 PROX1Q92786 737 aa16.93■□□□□ 0.3
CLN3-260ENST00000637578 CCDC124Q96CT7 223 aaKnown RBP16.93■□□□□ 0.3
CLN3-260ENST00000637578 BOD1Q96IK1 185 aa16.93■□□□□ 0.3
CLN3-260ENST00000637578 TPD52L3Q96J77 140 aa16.93■□□□□ 0.3
CLN3-260ENST00000637578 RASD1Q9Y272 281 aa16.93■□□□□ 0.3
CLN3-260ENST00000637578 MTORP42345 2549 aa16.92■□□□□ 0.3
CLN3-260ENST00000637578 DSCAMO60469 2012 aa16.92■□□□□ 0.3
CLN3-260ENST00000637578 A0A0B4J2E0 115 aa16.92■□□□□ 0.3
CLN3-260ENST00000637578 A0A1B0GX12 115 aa16.92■□□□□ 0.3
CLN3-260ENST00000637578 FMO6PO60774 539 aa16.92■□□□□ 0.3
CLN3-260ENST00000637578 TMCC2O75069 709 aa16.92■□□□□ 0.3
CLN3-260ENST00000637578 RAD51DO75771 328 aa16.92■□□□□ 0.3
CLN3-260ENST00000637578 DNAJC8O75937 253 aaPredicted RBP16.92■□□□□ 0.3
CLN3-260ENST00000637578 ZNF682O95780 498 aa16.92■□□□□ 0.3
CLN3-260ENST00000637578 CD3EP07766 207 aa16.92■□□□□ 0.3
CLN3-260ENST00000637578 RPS5P46782 204 aaKnown RBP16.92■□□□□ 0.3
CLN3-260ENST00000637578 BSPH1Q075Z2 132 aa16.92■□□□□ 0.3
CLN3-260ENST00000637578 STK11Q15831 433 aa16.92■□□□□ 0.3
CLN3-260ENST00000637578 AAED1Q7RTV5 226 aa16.92■□□□□ 0.3
CLN3-260ENST00000637578 VTCN1Q7Z7D3 282 aa16.92■□□□□ 0.3
CLN3-260ENST00000637578 GPAT4Q86UL3 456 aa16.92■□□□□ 0.3
CLN3-260ENST00000637578 RBM45Q8IUH3 476 aaKnown RBP16.92■□□□□ 0.3
CLN3-260ENST00000637578 EPHX4Q8IUS5 362 aa16.92■□□□□ 0.3
CLN3-260ENST00000637578 OR6T1Q8NGN1 323 aa16.92■□□□□ 0.3
CLN3-260ENST00000637578 VANGL1Q8TAA9 524 aaPredicted RBP16.92■□□□□ 0.3
CLN3-260ENST00000637578 AKAP1Q92667 903 aaKnown RBP eCLIP16.92■□□□□ 0.3
CLN3-260ENST00000637578 CADM1Q9BY67 442 aaKnown RBP16.92■□□□□ 0.3
CLN3-260ENST00000637578 GORASP2Q9H8Y8 452 aa16.92■□□□□ 0.3
CLN3-260ENST00000637578 NPAP1Q9NZP6 1156 aa16.92■□□□□ 0.3
CLN3-260ENST00000637578 SH3GLB1Q9Y371 365 aa16.92■□□□□ 0.3
CLN3-260ENST00000637578 SLC25A15Q9Y619 301 aa16.92■□□□□ 0.3
CLN3-260ENST00000637578 A0A087WUJ7 227 aa16.91■□□□□ 0.3
CLN3-260ENST00000637578 GSC2O15499 205 aa16.91■□□□□ 0.3
CLN3-260ENST00000637578 OR2T1O43869 369 aa16.91■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 59.3 ms