RNA–Protein interactions for RNA: ENST00000636907.1

CLN3-252, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,679 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-252ENST00000636907 TSPAN32Q96QS1 320 aa15.21■□□□□ 0.03
CLN3-252ENST00000636907 ZNF587Q96SQ5 575 aaPredicted RBP15.21■□□□□ 0.03
CLN3-252ENST00000636907 NMNAT3Q96T66 252 aa15.21■□□□□ 0.03
CLN3-252ENST00000636907 DDOQ99489 341 aa15.21■□□□□ 0.03
CLN3-252ENST00000636907 TEAD3Q99594 435 aa15.21■□□□□ 0.03
CLN3-252ENST00000636907 NDEL1Q9GZM8 345 aa15.21■□□□□ 0.03
CLN3-252ENST00000636907 SERINC1Q9NRX5 453 aa15.21■□□□□ 0.03
CLN3-252ENST00000636907 MRPL39Q9NYK5 338 aaKnown RBP15.21■□□□□ 0.03
CLN3-252ENST00000636907 ENPP5Q9UJA9 477 aa15.21■□□□□ 0.03
CLN3-252ENST00000636907 SLC22A31A6NKX4 558 aa15.2■□□□□ 0.02
CLN3-252ENST00000636907 M0R3G1 203 aa15.2■□□□□ 0.02
CLN3-252ENST00000636907 PLPP3O14495 311 aa15.2■□□□□ 0.02
CLN3-252ENST00000636907 SERPINI2O75830 405 aa15.2■□□□□ 0.02
CLN3-252ENST00000636907 TXNDC12O95881 172 aa15.2■□□□□ 0.02
CLN3-252ENST00000636907 SDHAP31040 664 aa15.2■□□□□ 0.02
CLN3-252ENST00000636907 IDUAP35475 653 aa15.2■□□□□ 0.02
CLN3-252ENST00000636907 TGFBR2P37173 567 aa15.2■□□□□ 0.02
CLN3-252ENST00000636907 LIPAP38571 399 aa15.2■□□□□ 0.02
CLN3-252ENST00000636907 DSCR4P56555 118 aaPredicted RBP15.2■□□□□ 0.02
CLN3-252ENST00000636907 NHLH1Q02575 133 aa15.2■□□□□ 0.02
CLN3-252ENST00000636907 TMED1Q13445 227 aa15.2■□□□□ 0.02
CLN3-252ENST00000636907 OR7A5Q15622 319 aa15.2■□□□□ 0.02
CLN3-252ENST00000636907 C3orf33Q6P1S2 294 aa15.2■□□□□ 0.02
CLN3-252ENST00000636907 SLC16A12Q6ZSM3 486 aa15.2■□□□□ 0.02
CLN3-252ENST00000636907 ANKRD13BQ86YJ7 626 aa15.2■□□□□ 0.02
CLN3-252ENST00000636907 GHDCQ8N2G8 530 aa15.2■□□□□ 0.02
CLN3-252ENST00000636907 CLEC1AQ8NC01 280 aa15.2■□□□□ 0.02
CLN3-252ENST00000636907 UBL7Q96S82 380 aaPredicted RBP15.2■□□□□ 0.02
CLN3-252ENST00000636907 MND1Q9BWT6 205 aa15.2■□□□□ 0.02
CLN3-252ENST00000636907 ASPNQ9BXN1 380 aa15.2■□□□□ 0.02
CLN3-252ENST00000636907 POTEKPQ9BYX7 375 aa15.2■□□□□ 0.02
CLN3-252ENST00000636907 TMEM185BQ9H7F4 350 aa15.2■□□□□ 0.02
CLN3-252ENST00000636907 RPH3AQ9Y2J0 694 aaPredicted RBP15.2■□□□□ 0.02
CLN3-252ENST00000636907 OR6C68A6NDL8 312 aa15.19■□□□□ 0.02
CLN3-252ENST00000636907 J3QRE1 110 aa15.19■□□□□ 0.02
CLN3-252ENST00000636907 MYL12BO14950 172 aa15.19■□□□□ 0.02
CLN3-252ENST00000636907 RNF13O43567 381 aa15.19■□□□□ 0.02
CLN3-252ENST00000636907 NOL3O60936 208 aaKnown RBP15.19■□□□□ 0.02
CLN3-252ENST00000636907 HSMCR30P0CW71 290 aa15.19■□□□□ 0.02
CLN3-252ENST00000636907 MYL12AP19105 171 aa15.19■□□□□ 0.02
CLN3-252ENST00000636907 NR4A1P22736 598 aa15.19■□□□□ 0.02
CLN3-252ENST00000636907 AHCYP23526 432 aa15.19■□□□□ 0.02
CLN3-252ENST00000636907 PCSK6P29122 969 aa15.19■□□□□ 0.02
CLN3-252ENST00000636907 ATP6V1E1P36543 226 aa15.19■□□□□ 0.02
CLN3-252ENST00000636907 CD96P40200 585 aa15.19■□□□□ 0.02
CLN3-252ENST00000636907 CDKN2AP42771 156 aaKnown RBP15.19■□□□□ 0.02
CLN3-252ENST00000636907 SLC16A1P53985 500 aa15.19■□□□□ 0.02
CLN3-252ENST00000636907 ARMCX4Q5H9R4 360 aa15.19■□□□□ 0.02
CLN3-252ENST00000636907 ARMC4Q5T2S8 1044 aa15.19■□□□□ 0.02
CLN3-252ENST00000636907 SPINK14Q6IE38 97 aa15.19■□□□□ 0.02
CLN3-252ENST00000636907 LEG1Q6P5S2 330 aa15.19■□□□□ 0.02
CLN3-252ENST00000636907 GTPBP8Q8N3Z3 284 aaPredicted RBP15.19■□□□□ 0.02
CLN3-252ENST00000636907 PROKR2Q8NFJ6 384 aa15.19■□□□□ 0.02
CLN3-252ENST00000636907 RAB2BQ8WUD1 216 aa15.19■□□□□ 0.02
CLN3-252ENST00000636907 INIPQ9NRY2 104 aa15.19■□□□□ 0.02
CLN3-252ENST00000636907 DEPPQ9NTK1 212 aa15.19■□□□□ 0.02
CLN3-252ENST00000636907 LRFN1Q9P244 771 aa15.19■□□□□ 0.02
CLN3-252ENST00000636907 TNFRSF10DQ9UBN6 386 aa15.19■□□□□ 0.02
CLN3-252ENST00000636907 GRHPRQ9UBQ7 328 aa15.19■□□□□ 0.02
CLN3-252ENST00000636907 DKKL1Q9UK85 242 aa15.19■□□□□ 0.02
CLN3-252ENST00000636907 ZNF346Q9UL40 294 aaKnown RBP15.19■□□□□ 0.02
CLN3-252ENST00000636907 EXOSC1Q9Y3B2 195 aaKnown RBP15.19■□□□□ 0.02
CLN3-252ENST00000636907 SPIN1Q9Y657 262 aaPredicted RBP15.19■□□□□ 0.02
CLN3-252ENST00000636907 FREM2Q5SZK8 3169 aa15.19■□□□□ 0.02
CLN3-252ENST00000636907 ARGFXA6NJG6 315 aa15.19■□□□□ 0.02
CLN3-252ENST00000636907 LIPT2A6NK58 231 aa15.19■□□□□ 0.02
CLN3-252ENST00000636907 CBR3O75828 277 aa15.19■□□□□ 0.02
CLN3-252ENST00000636907 OR6A2O95222 327 aa15.19■□□□□ 0.02
CLN3-252ENST00000636907 ATE1O95260 518 aa15.19■□□□□ 0.02
CLN3-252ENST00000636907 PLGP00747 810 aaPredicted RBP15.19■□□□□ 0.02
CLN3-252ENST00000636907 IGHA1P01876 353 aa15.19■□□□□ 0.02
CLN3-252ENST00000636907 OPN1LWP04000 364 aa15.19■□□□□ 0.02
CLN3-252ENST00000636907 LIMS3P0CW19 117 aa15.19■□□□□ 0.02
CLN3-252ENST00000636907 LIMS4P0CW20 117 aa15.19■□□□□ 0.02
CLN3-252ENST00000636907 CD36P16671 472 aa15.19■□□□□ 0.02
CLN3-252ENST00000636907 GPR85P60893 370 aa15.19■□□□□ 0.02
CLN3-252ENST00000636907 C19orf57Q0VDD7 668 aa15.19■□□□□ 0.02
CLN3-252ENST00000636907 MYBPHQ13203 477 aa15.19■□□□□ 0.02
CLN3-252ENST00000636907 SELENBP1Q13228 472 aa15.19■□□□□ 0.02
CLN3-252ENST00000636907 MFSD13AQ14CX5 517 aa15.19■□□□□ 0.02
CLN3-252ENST00000636907 RTP5Q14D33 572 aa15.19■□□□□ 0.02
CLN3-252ENST00000636907 GLYR1Q49A26 553 aaPredicted RBP15.19■□□□□ 0.02
CLN3-252ENST00000636907 MESTQ5EB52 335 aa15.19■□□□□ 0.02
CLN3-252ENST00000636907 EMC4Q5J8M3 183 aa15.19■□□□□ 0.02
CLN3-252ENST00000636907 TUBA3EQ6PEY2 450 aa15.19■□□□□ 0.02
CLN3-252ENST00000636907 JAZF1Q86VZ6 243 aa15.19■□□□□ 0.02
CLN3-252ENST00000636907 MGLLQ99685 303 aa15.19■□□□□ 0.02
CLN3-252ENST00000636907 NMNAT2Q9BZQ4 307 aa15.19■□□□□ 0.02
CLN3-252ENST00000636907 TIMMDC1Q9NPL8 285 aa15.19■□□□□ 0.02
CLN3-252ENST00000636907 PTTG2Q9NZH5 202 aa15.19■□□□□ 0.02
CLN3-252ENST00000636907 ABI3Q9P2A4 366 aa15.19■□□□□ 0.02
CLN3-252ENST00000636907 CDV3Q9UKY7 258 aaKnown RBP15.19■□□□□ 0.02
CLN3-252ENST00000636907 CORINQ9Y5Q5 1042 aa15.19■□□□□ 0.02
CLN3-252ENST00000636907 FAM186AA6NE01 2351 aa15.18■□□□□ 0.02
CLN3-252ENST00000636907 NKX2-8O15522 239 aa15.18■□□□□ 0.02
CLN3-252ENST00000636907 ZIC3O60481 467 aa15.18■□□□□ 0.02
CLN3-252ENST00000636907 NEURL1O76050 574 aa15.18■□□□□ 0.02
CLN3-252ENST00000636907 GTF2E2P29084 291 aaKnown RBP15.18■□□□□ 0.02
CLN3-252ENST00000636907 SHC1P29353 583 aa15.18■□□□□ 0.02
CLN3-252ENST00000636907 CASRP41180 1078 aa15.18■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 60.9 ms