RNA–Protein interactions for RNA: ENST00000636355.1

CLN3-248, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 975 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-248ENST00000636355 ASB18Q6ZVZ8 466 aa9.54□□□□□ -0.88
CLN3-248ENST00000636355 JAZF1Q86VZ6 243 aa9.54□□□□□ -0.88
CLN3-248ENST00000636355 ANKRD13BQ86YJ7 626 aa9.54□□□□□ -0.88
CLN3-248ENST00000636355 CPOQ8IVL8 374 aa9.54□□□□□ -0.88
CLN3-248ENST00000636355 GALNT16Q8N428 558 aa9.54□□□□□ -0.88
CLN3-248ENST00000636355 LRRC17Q8N6Y2 441 aa9.54□□□□□ -0.88
CLN3-248ENST00000636355 FAM98AQ8NCA5 519 aaKnown RBP9.54□□□□□ -0.88
CLN3-248ENST00000636355 SLC37A3Q8NCC5 494 aa9.54□□□□□ -0.88
CLN3-248ENST00000636355 LSM14AQ8ND56 463 aaKnown RBP9.54□□□□□ -0.88
CLN3-248ENST00000636355 OR52I1Q8NGK6 324 aa9.54□□□□□ -0.88
CLN3-248ENST00000636355 OR52N1Q8NH53 320 aa9.54□□□□□ -0.88
CLN3-248ENST00000636355 POC1BQ8TC44 478 aa9.54□□□□□ -0.88
CLN3-248ENST00000636355 KCNE4Q8WWG9 221 aa9.54□□□□□ -0.88
CLN3-248ENST00000636355 KISS1RQ969F8 398 aaPredicted RBP9.54□□□□□ -0.88
CLN3-248ENST00000636355 MIB2Q96AX9 1013 aa9.54□□□□□ -0.88
CLN3-248ENST00000636355 ISOC1Q96CN7 298 aa9.54□□□□□ -0.88
CLN3-248ENST00000636355 RNFT2Q96EX2 444 aa9.54□□□□□ -0.88
CLN3-248ENST00000636355 MRPL48Q96GC5 212 aaKnown RBP9.54□□□□□ -0.88
CLN3-248ENST00000636355 OR2B2Q9GZK3 357 aa9.54□□□□□ -0.88
CLN3-248ENST00000636355 ENKD1Q9H0I2 346 aa9.54□□□□□ -0.88
CLN3-248ENST00000636355 AMBNQ9NP70 447 aa9.54□□□□□ -0.88
CLN3-248ENST00000636355 CHST11Q9NPF2 352 aa9.54□□□□□ -0.88
CLN3-248ENST00000636355 INIPQ9NRY2 104 aa9.54□□□□□ -0.88
CLN3-248ENST00000636355 QPCTLQ9NXS2 382 aa9.54□□□□□ -0.88
CLN3-248ENST00000636355 LRFN1Q9P244 771 aa9.54□□□□□ -0.88
CLN3-248ENST00000636355 GRHPRQ9UBQ7 328 aa9.54□□□□□ -0.88
CLN3-248ENST00000636355 IL20RAQ9UHF4 553 aa9.54□□□□□ -0.88
CLN3-248ENST00000636355 ENPP5Q9UJA9 477 aa9.54□□□□□ -0.88
CLN3-248ENST00000636355 MOKQ9UQ07 419 aa9.54□□□□□ -0.88
CLN3-248ENST00000636355 POLHQ9Y253 713 aa9.54□□□□□ -0.88
CLN3-248ENST00000636355 KLF13Q9Y2Y9 288 aaPredicted RBP9.54□□□□□ -0.88
CLN3-248ENST00000636355 LSM2Q9Y333 95 aaKnown RBP9.54□□□□□ -0.88
CLN3-248ENST00000636355 PCDHGB7Q9Y5F8 929 aa9.54□□□□□ -0.88
CLN3-248ENST00000636355 HRH3Q9Y5N1 445 aa9.54□□□□□ -0.88
CLN3-248ENST00000636355 MED13Q9UHV7 2174 aa9.53□□□□□ -0.88
CLN3-248ENST00000636355 PTPRZ1P23471 2315 aaPredicted RBP9.53□□□□□ -0.88
CLN3-248ENST00000636355 TEX13CA0A0J9YWL9 993 aa9.53□□□□□ -0.88
CLN3-248ENST00000636355 LOC102725191A0A1B0GVB3 256 aa9.53□□□□□ -0.88
CLN3-248ENST00000636355 A0A1W2PRG6 482 aa9.53□□□□□ -0.88
CLN3-248ENST00000636355 OR5H15A6NDH6 313 aa9.53□□□□□ -0.88
CLN3-248ENST00000636355 CCDC182A6NF36 153 aa9.53□□□□□ -0.88
CLN3-248ENST00000636355 CCDC160A6NGH7 325 aa9.53□□□□□ -0.88
CLN3-248ENST00000636355 LRRC3CA6NJW4 275 aa9.53□□□□□ -0.88
CLN3-248ENST00000636355 LRRN3E7EW58 273 aa9.53□□□□□ -0.88
CLN3-248ENST00000636355 M0R082 166 aa9.53□□□□□ -0.88
CLN3-248ENST00000636355 PLPP3O14495 311 aa9.53□□□□□ -0.88
CLN3-248ENST00000636355 XKRYO14609 159 aa9.53□□□□□ -0.88
CLN3-248ENST00000636355 SLC22A1O15245 554 aa9.53□□□□□ -0.88
CLN3-248ENST00000636355 GMFGO60234 142 aa9.53□□□□□ -0.88
CLN3-248ENST00000636355 EIF1BO60739 113 aaKnown RBP9.53□□□□□ -0.88
CLN3-248ENST00000636355 NEURL1O76050 574 aa9.53□□□□□ -0.88
CLN3-248ENST00000636355 OR6A2O95222 327 aa9.53□□□□□ -0.88
CLN3-248ENST00000636355 NR2C1P13056 603 aa9.53□□□□□ -0.88
CLN3-248ENST00000636355 HIST1H1CP16403 213 aaKnown RBP9.53□□□□□ -0.88
CLN3-248ENST00000636355 CNR1P21554 472 aa9.53□□□□□ -0.88
CLN3-248ENST00000636355 GRPRP30550 384 aa9.53□□□□□ -0.88
CLN3-248ENST00000636355 WNT4P56705 351 aa9.53□□□□□ -0.88
CLN3-248ENST00000636355 CTXN1P60606 82 aa9.53□□□□□ -0.88
CLN3-248ENST00000636355 RPL27P61353 136 aaKnown RBP9.53□□□□□ -0.88
CLN3-248ENST00000636355 OC90Q02509 493 aaPredicted RBP9.53□□□□□ -0.88
CLN3-248ENST00000636355 HSF2Q03933 536 aa9.53□□□□□ -0.88
CLN3-248ENST00000636355 LTBQ06643 244 aa9.53□□□□□ -0.88
CLN3-248ENST00000636355 PIGFQ07326 219 aa9.53□□□□□ -0.88
CLN3-248ENST00000636355 ACSM1Q08AH1 577 aa9.53□□□□□ -0.88
CLN3-248ENST00000636355 CDC20Q12834 499 aa9.53□□□□□ -0.88
CLN3-248ENST00000636355 MLLT11Q13015 90 aaPredicted RBP9.53□□□□□ -0.88
CLN3-248ENST00000636355 MFAP5Q13361 173 aa9.53□□□□□ -0.88
CLN3-248ENST00000636355 TIGD6Q17RP2 521 aa9.53□□□□□ -0.88
CLN3-248ENST00000636355 ZNF468Q5VIY5 522 aaPredicted RBP9.53□□□□□ -0.88
CLN3-248ENST00000636355 AGAP7PQ5VUJ5 663 aa9.53□□□□□ -0.88
CLN3-248ENST00000636355 B3GNTL1Q67FW5 361 aaPredicted RBP9.53□□□□□ -0.88
CLN3-248ENST00000636355 POMZP3Q6PJE2 187 aa9.53□□□□□ -0.88
CLN3-248ENST00000636355 H1FNTQ75WM6 255 aaPredicted RBP9.53□□□□□ -0.88
CLN3-248ENST00000636355 MDGA2Q7Z553 956 aa9.53□□□□□ -0.88
CLN3-248ENST00000636355 PXKQ7Z7A4 578 aa9.53□□□□□ -0.88
CLN3-248ENST00000636355 P2RY8Q86VZ1 359 aa9.53□□□□□ -0.88
CLN3-248ENST00000636355 ZNF227Q86WZ6 799 aa9.53□□□□□ -0.88
CLN3-248ENST00000636355 CLVS1Q8IUQ0 354 aaPredicted RBP9.53□□□□□ -0.88
CLN3-248ENST00000636355 ACBD7Q8N6N7 88 aa9.53□□□□□ -0.88
CLN3-248ENST00000636355 ARIH2OSQ8N7S6 290 aa9.53□□□□□ -0.88
CLN3-248ENST00000636355 NPEPL1Q8NDH3 523 aa9.53□□□□□ -0.88
CLN3-248ENST00000636355 ZNF248Q8NDW4 579 aa9.53□□□□□ -0.88
CLN3-248ENST00000636355 OR2T4Q8NH00 348 aa9.53□□□□□ -0.88
CLN3-248ENST00000636355 MOSPD2Q8NHP6 518 aa9.53□□□□□ -0.88
CLN3-248ENST00000636355 ZNF417Q8TAU3 575 aa9.53□□□□□ -0.88
CLN3-248ENST00000636355 ZNF519Q8TB69 540 aa9.53□□□□□ -0.88
CLN3-248ENST00000636355 HAVCR2Q8TDQ0 301 aa9.53□□□□□ -0.88
CLN3-248ENST00000636355 AGAP4Q96P64 663 aa9.53□□□□□ -0.88
CLN3-248ENST00000636355 ZNF587Q96SQ5 575 aaPredicted RBP9.53□□□□□ -0.88
CLN3-248ENST00000636355 MNTQ99583 582 aa9.53□□□□□ -0.88
CLN3-248ENST00000636355 TXNIPQ9H3M7 391 aa9.53□□□□□ -0.88
CLN3-248ENST00000636355 ZFP64Q9NPA5 681 aa9.53□□□□□ -0.88
CLN3-248ENST00000636355 STMN3Q9NZ72 180 aa9.53□□□□□ -0.88
CLN3-248ENST00000636355 TNFRSF10DQ9UBN6 386 aa9.53□□□□□ -0.88
CLN3-248ENST00000636355 SEC14L4Q9UDX3 406 aa9.53□□□□□ -0.88
CLN3-248ENST00000636355 ADAM18Q9Y3Q7 739 aa9.53□□□□□ -0.88
CLN3-248ENST00000636355 NOX1Q9Y5S8 564 aa9.53□□□□□ -0.88
CLN3-248ENST00000636355 IER3IP1Q9Y5U9 82 aa9.53□□□□□ -0.88
CLN3-248ENST00000636355 CNTRLQ7Z7A1 2325 aa9.53□□□□□ -0.88
CLN3-248ENST00000636355 C2orf72A6NCS6 295 aa9.52□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 41.4 ms