RNA–Protein interactions for RNA: ENST00000622516.4

CUX1-221, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,990 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-221ENST00000622516 PELOQ9BRX2 385 aaKnown RBP9.66□□□□□ -0.86
CUX1-221ENST00000622516 AKIRIN1Q9H9L7 192 aaPredicted RBP9.66□□□□□ -0.86
CUX1-221ENST00000622516 COPS7AQ9UBW8 275 aa9.66□□□□□ -0.86
CUX1-221ENST00000622516 POLHQ9Y253 713 aa9.66□□□□□ -0.86
CUX1-221ENST00000622516 TRBV2A0A0J9YWF9 115 aa9.66□□□□□ -0.86
CUX1-221ENST00000622516 A0A1B0GTH9 108 aa9.66□□□□□ -0.86
CUX1-221ENST00000622516 EVX1P49640 407 aa9.66□□□□□ -0.86
CUX1-221ENST00000622516 RPS4XP62701 263 aaKnown RBP9.66□□□□□ -0.86
CUX1-221ENST00000622516 ESPNLQ6ZVH7 1005 aa9.66□□□□□ -0.86
CUX1-221ENST00000622516 GPALPP1Q8IXQ4 340 aa9.66□□□□□ -0.86
CUX1-221ENST00000622516 OR1N1Q8NGS0 311 aa9.66□□□□□ -0.86
CUX1-221ENST00000622516 DAZLQ92904 295 aaKnown RBP9.66□□□□□ -0.86
CUX1-221ENST00000622516 DDOQ99489 341 aa9.66□□□□□ -0.86
CUX1-221ENST00000622516 CTRCQ99895 268 aa9.66□□□□□ -0.86
CUX1-221ENST00000622516 ALG12Q9BV10 488 aa9.66□□□□□ -0.86
CUX1-221ENST00000622516 OR11A1Q9GZK7 315 aa9.66□□□□□ -0.86
CUX1-221ENST00000622516 PCED1AQ9H1Q7 454 aa9.66□□□□□ -0.86
CUX1-221ENST00000622516 APMAPQ9HDC9 416 aa9.66□□□□□ -0.86
CUX1-221ENST00000622516 HAO2Q9NYQ3 351 aa9.66□□□□□ -0.86
CUX1-221ENST00000622516 EXTL2Q9UBQ6 330 aa9.66□□□□□ -0.86
CUX1-221ENST00000622516 ST6GALNAC2Q9UJ37 374 aa9.66□□□□□ -0.86
CUX1-221ENST00000622516 A0A1W2PQM1 296 aa9.66□□□□□ -0.86
CUX1-221ENST00000622516 TMEM72A0PK05 275 aa9.66□□□□□ -0.86
CUX1-221ENST00000622516 EIF4EP06730 217 aaKnown RBP9.66□□□□□ -0.86
CUX1-221ENST00000622516 GUSBP08236 651 aa9.66□□□□□ -0.86
CUX1-221ENST00000622516 F8A1P23610 371 aa9.66□□□□□ -0.86
CUX1-221ENST00000622516 NR4A2P43354 598 aa9.66□□□□□ -0.86
CUX1-221ENST00000622516 DIO1P49895 249 aa9.66□□□□□ -0.86
CUX1-221ENST00000622516 GDI2P50395 445 aaKnown RBP9.66□□□□□ -0.86
CUX1-221ENST00000622516 PPP3R1P63098 170 aa9.66□□□□□ -0.86
CUX1-221ENST00000622516 GPLD1P80108 840 aa9.66□□□□□ -0.86
CUX1-221ENST00000622516 DMKNQ6E0U4 476 aaPredicted RBP9.66□□□□□ -0.86
CUX1-221ENST00000622516 SLC29A4Q7RTT9 530 aa9.66□□□□□ -0.86
CUX1-221ENST00000622516 JAZF1Q86VZ6 243 aa9.66□□□□□ -0.86
CUX1-221ENST00000622516 OR4D9Q8NGE8 314 aa9.66□□□□□ -0.86
CUX1-221ENST00000622516 C8orf44Q96CB5 159 aa9.66□□□□□ -0.86
CUX1-221ENST00000622516 MVB12AQ96EY5 273 aa9.66□□□□□ -0.86
CUX1-221ENST00000622516 HOXD1Q9GZZ0 328 aa9.66□□□□□ -0.86
CUX1-221ENST00000622516 DUSP15Q9H1R2 295 aaPredicted RBP9.66□□□□□ -0.86
CUX1-221ENST00000622516 PPP1R3EQ9H7J1 279 aa9.66□□□□□ -0.86
CUX1-221ENST00000622516 NCDNQ9UBB6 729 aa9.66□□□□□ -0.86
CUX1-221ENST00000622516 KLHDC2Q9Y2U9 406 aa9.66□□□□□ -0.86
CUX1-221ENST00000622516 AK6Q9Y3D8 172 aaKnown RBP9.66□□□□□ -0.86
CUX1-221ENST00000622516 ADAMTS9Q9P2N4 1935 aa9.65□□□□□ -0.86
CUX1-221ENST00000622516 FREM3P0C091 2139 aa9.65□□□□□ -0.86
CUX1-221ENST00000622516 RTTNQ86VV8 2226 aa9.65□□□□□ -0.86
CUX1-221ENST00000622516 OR2T7P0C7T2 308 aa9.65□□□□□ -0.86
CUX1-221ENST00000622516 PNMTP11086 282 aa9.65□□□□□ -0.86
CUX1-221ENST00000622516 CXCR1P25024 350 aa9.65□□□□□ -0.86
CUX1-221ENST00000622516 EDNRAP25101 427 aa9.65□□□□□ -0.86
CUX1-221ENST00000622516 CASP3P42574 277 aa9.65□□□□□ -0.86
CUX1-221ENST00000622516 PRPS1P60891 318 aa9.65□□□□□ -0.86
CUX1-221ENST00000622516 SIRPAP78324 504 aa9.65□□□□□ -0.86
CUX1-221ENST00000622516 BDH1Q02338 343 aa9.65□□□□□ -0.86
CUX1-221ENST00000622516 BICRALQ6AI39 1079 aa9.65□□□□□ -0.86
CUX1-221ENST00000622516 PWWP2BQ6NUJ5 590 aa9.65□□□□□ -0.86
CUX1-221ENST00000622516 MTFR2Q6P444 385 aa9.65□□□□□ -0.86
CUX1-221ENST00000622516 SFXN4Q6P4A7 337 aa9.65□□□□□ -0.86
CUX1-221ENST00000622516 KANSL1Q7Z3B3 1105 aa9.65□□□□□ -0.86
CUX1-221ENST00000622516 OR2T27Q8NH04 317 aa9.65□□□□□ -0.86
CUX1-221ENST00000622516 PIGKQ92643 395 aa9.65□□□□□ -0.86
CUX1-221ENST00000622516 CLDN23Q96B33 292 aa9.65□□□□□ -0.86
CUX1-221ENST00000622516 COQ7Q99807 217 aa9.65□□□□□ -0.86
CUX1-221ENST00000622516 BEX2Q9BXY8 128 aa9.65□□□□□ -0.86
CUX1-221ENST00000622516 CHRNA10Q9GZZ6 450 aa9.65□□□□□ -0.86
CUX1-221ENST00000622516 SYT4Q9H2B2 425 aa9.65□□□□□ -0.86
CUX1-221ENST00000622516 ENAMQ9NRM1 1142 aa9.65□□□□□ -0.86
CUX1-221ENST00000622516 INPP5EQ9NRR6 644 aa9.65□□□□□ -0.86
CUX1-221ENST00000622516 GRHPRQ9UBQ7 328 aa9.65□□□□□ -0.86
CUX1-221ENST00000622516 BDP1A6H8Y1 2624 aa9.65□□□□□ -0.86
CUX1-221ENST00000622516 ACOD1A6NK06 481 aa9.65□□□□□ -0.87
CUX1-221ENST00000622516 ARHGEF9O43307 516 aa9.65□□□□□ -0.87
CUX1-221ENST00000622516 SIGLEC6O43699 453 aa9.65□□□□□ -0.87
CUX1-221ENST00000622516 OR8G3PP0DMU2 310 aa9.65□□□□□ -0.87
CUX1-221ENST00000622516 GALNSP34059 522 aa9.65□□□□□ -0.87
CUX1-221ENST00000622516 KIR2DL3P43628 341 aa9.65□□□□□ -0.87
CUX1-221ENST00000622516 RAB25P57735 213 aa9.65□□□□□ -0.87
CUX1-221ENST00000622516 NANOS3P60323 173 aaKnown RBP9.65□□□□□ -0.87
CUX1-221ENST00000622516 ACTC1P68032 377 aa9.65□□□□□ -0.87
CUX1-221ENST00000622516 ACTA1P68133 377 aa9.65□□□□□ -0.87
CUX1-221ENST00000622516 CCL7P80098 99 aa9.65□□□□□ -0.87
CUX1-221ENST00000622516 GPR50Q13585 617 aa9.65□□□□□ -0.87
CUX1-221ENST00000622516 LINC01590Q5TEZ4 76 aa9.65□□□□□ -0.87
CUX1-221ENST00000622516 TRIQKQ629K1 86 aa9.65□□□□□ -0.87
CUX1-221ENST00000622516 ZNF517Q6ZMY9 492 aaPredicted RBP9.65□□□□□ -0.87
CUX1-221ENST00000622516 ASB18Q6ZVZ8 466 aa9.65□□□□□ -0.87
CUX1-221ENST00000622516 COX15Q7KZN9 410 aa9.65□□□□□ -0.87
CUX1-221ENST00000622516 FAM122BQ7Z309 247 aa9.65□□□□□ -0.87
CUX1-221ENST00000622516 OR6V1Q8N148 313 aa9.65□□□□□ -0.87
CUX1-221ENST00000622516 OR5H6Q8NGV6 325 aa9.65□□□□□ -0.87
CUX1-221ENST00000622516 MAFAQ8NHW3 353 aaPredicted RBP9.65□□□□□ -0.87
CUX1-221ENST00000622516 TXNDC15Q96J42 360 aa9.65□□□□□ -0.87
CUX1-221ENST00000622516 TSPAN32Q96QS1 320 aa9.65□□□□□ -0.87
CUX1-221ENST00000622516 WACQ9BTA9 647 aa9.65□□□□□ -0.87
CUX1-221ENST00000622516 SLC25A18Q9H1K4 315 aa9.65□□□□□ -0.87
CUX1-221ENST00000622516 WDR76Q9H967 626 aa9.65□□□□□ -0.87
CUX1-221ENST00000622516 GALNT9Q9HCQ5 603 aa9.65□□□□□ -0.87
CUX1-221ENST00000622516 KLHL21Q9UJP4 597 aa9.65□□□□□ -0.87
CUX1-221ENST00000622516 HIF3AQ9Y2N7 669 aa9.65□□□□□ -0.87
CUX1-221ENST00000622516 MRPS7Q9Y2R9 242 aaKnown RBP9.65□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms