RNA–Protein interactions for RNA: ENST00000618700.4

UPF3A-211, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 1,210 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-211ENST00000618700 RASGEF1BQ0VAM2 473 aa17.56■□□□□ 0.4
UPF3A-211ENST00000618700 SLC17A1Q14916 467 aa17.56■□□□□ 0.4
UPF3A-211ENST00000618700 POU4F3Q15319 338 aa17.56■□□□□ 0.4
UPF3A-211ENST00000618700 MICAQ29983 383 aa17.56■□□□□ 0.4
UPF3A-211ENST00000618700 GTF2IRD2BQ6EKJ0 949 aa17.56■□□□□ 0.4
UPF3A-211ENST00000618700 PGBD2Q6P3X8 592 aa17.56■□□□□ 0.4
UPF3A-211ENST00000618700 TMPRSS11FQ6ZWK6 438 aa17.56■□□□□ 0.4
UPF3A-211ENST00000618700 ZER1Q7Z7L7 766 aa17.56■□□□□ 0.4
UPF3A-211ENST00000618700 TMEM179BQ7Z7N9 219 aa17.56■□□□□ 0.4
UPF3A-211ENST00000618700 GTF2IRD2Q86UP8 949 aa17.56■□□□□ 0.4
UPF3A-211ENST00000618700 MEX3DQ86XN8 651 aaKnown RBP17.56■□□□□ 0.4
UPF3A-211ENST00000618700 LINC00471Q8N535 108 aa17.56■□□□□ 0.4
UPF3A-211ENST00000618700 OR9Q2Q8NGE9 314 aa17.56■□□□□ 0.4
UPF3A-211ENST00000618700 LRTOMTQ8WZ04 291 aa17.56■□□□□ 0.4
UPF3A-211ENST00000618700 RND1Q92730 232 aa17.56■□□□□ 0.4
UPF3A-211ENST00000618700 FAM46AQ96IP4 442 aaKnown RBP17.56■□□□□ 0.4
UPF3A-211ENST00000618700 BCO1Q9HAY6 547 aa17.56■□□□□ 0.4
UPF3A-211ENST00000618700 KRCC1Q9NPI7 259 aaPredicted RBP17.56■□□□□ 0.4
UPF3A-211ENST00000618700 FANCFQ9NPI8 374 aa17.56■□□□□ 0.4
UPF3A-211ENST00000618700 KLHL13Q9P2N7 655 aa17.56■□□□□ 0.4
UPF3A-211ENST00000618700 B3GAT1Q9P2W7 334 aa17.56■□□□□ 0.4
UPF3A-211ENST00000618700 Q9UFV3 132 aa17.56■□□□□ 0.4
UPF3A-211ENST00000618700 ERRFI1Q9UJM3 462 aaPredicted RBP17.56■□□□□ 0.4
UPF3A-211ENST00000618700 RASD1Q9Y272 281 aa17.56■□□□□ 0.4
UPF3A-211ENST00000618700 ARRDC5A6NEK1 342 aa17.55■□□□□ 0.4
UPF3A-211ENST00000618700 PLPP3O14495 311 aa17.55■□□□□ 0.4
UPF3A-211ENST00000618700 GNGT2O14610 69 aa17.55■□□□□ 0.4
UPF3A-211ENST00000618700 OR10H3O60404 316 aa17.55■□□□□ 0.4
UPF3A-211ENST00000618700 VAMP5O95183 116 aa17.55■□□□□ 0.4
UPF3A-211ENST00000618700 TMIGD3P0DMS9 266 aaPredicted RBP17.55■□□□□ 0.4
UPF3A-211ENST00000618700 FUT1P19526 365 aa17.55■□□□□ 0.4
UPF3A-211ENST00000618700 PMS2P3Q13401 168 aa17.55■□□□□ 0.4
UPF3A-211ENST00000618700 LAPTM4AQ15012 233 aa17.55■□□□□ 0.4
UPF3A-211ENST00000618700 HMBOX1Q6NT76 420 aa17.55■□□□□ 0.4
UPF3A-211ENST00000618700 MYO7BQ6PIF6 2116 aa17.55■□□□□ 0.4
UPF3A-211ENST00000618700 CDK20Q8IZL9 346 aa17.55■□□□□ 0.4
UPF3A-211ENST00000618700 INTS12Q96CB8 462 aaKnown RBP17.55■□□□□ 0.4
UPF3A-211ENST00000618700 GPA33Q99795 319 aa17.55■□□□□ 0.4
UPF3A-211ENST00000618700 SF3B5Q9BWJ5 86 aaKnown RBP17.55■□□□□ 0.4
UPF3A-211ENST00000618700 S100A14Q9HCY8 104 aa17.55■□□□□ 0.4
UPF3A-211ENST00000618700 C6orf203Q9P0P8 240 aaPredicted RBP17.55■□□□□ 0.4
UPF3A-211ENST00000618700 CLEC4AQ9UMR7 237 aa17.55■□□□□ 0.4
UPF3A-211ENST00000618700 USP9XQ93008 2570 aaPredicted RBP17.55■□□□□ 0.4
UPF3A-211ENST00000618700 LOC102725191A0A1B0GVB3 256 aa17.54■□□□□ 0.4
UPF3A-211ENST00000618700 HSPB2A8KAH6 182 aa17.54■□□□□ 0.4
UPF3A-211ENST00000618700 ZNF724A8MTY0 619 aa17.54■□□□□ 0.4
UPF3A-211ENST00000618700 EFCAB9A8MZ26 197 aa17.54■□□□□ 0.4
UPF3A-211ENST00000618700 TNFSF13O75888 250 aa17.54■□□□□ 0.4
UPF3A-211ENST00000618700 SAGP10523 405 aaPredicted RBP17.54■□□□□ 0.4
UPF3A-211ENST00000618700 FPR3P25089 353 aa17.54■□□□□ 0.4
UPF3A-211ENST00000618700 AGTR1P30556 359 aa17.54■□□□□ 0.4
UPF3A-211ENST00000618700 UQCRC1P31930 480 aa17.54■□□□□ 0.4
UPF3A-211ENST00000618700 IFNGR2P38484 337 aa17.54■□□□□ 0.4
UPF3A-211ENST00000618700 SLC9A3P48764 834 aa17.54■□□□□ 0.4
UPF3A-211ENST00000618700 RPS4XP62701 263 aaKnown RBP17.54■□□□□ 0.4
UPF3A-211ENST00000618700 PUDPQ08623 228 aa17.54■□□□□ 0.4
UPF3A-211ENST00000618700 FOXF2Q12947 444 aa17.54■□□□□ 0.4
UPF3A-211ENST00000618700 FHL1Q13642 323 aa17.54■□□□□ 0.4
UPF3A-211ENST00000618700 HSPB2Q16082 182 aa17.54■□□□□ 0.4
UPF3A-211ENST00000618700 C1orf94Q6P1W5 598 aa17.54■□□□□ 0.4
UPF3A-211ENST00000618700 ZNF771Q7L3S4 317 aaPredicted RBP17.54■□□□□ 0.4
UPF3A-211ENST00000618700 NANOGNBQ7Z5D8 188 aa17.54■□□□□ 0.4
UPF3A-211ENST00000618700 AMIGO2Q86SJ2 522 aa17.54■□□□□ 0.4
UPF3A-211ENST00000618700 MCEMP1Q8IX19 187 aa17.54■□□□□ 0.4
UPF3A-211ENST00000618700 TACO1Q9BSH4 297 aaKnown RBP17.54■□□□□ 0.4
UPF3A-211ENST00000618700 TAS2R5Q9NYW4 299 aa17.54■□□□□ 0.4
UPF3A-211ENST00000618700 HIF3AQ9Y2N7 669 aa17.54■□□□□ 0.4
UPF3A-211ENST00000618700 MS4A18H0YCH9 400 aa17.53■□□□□ 0.4
UPF3A-211ENST00000618700 E2F6O75461 281 aa17.53■□□□□ 0.4
UPF3A-211ENST00000618700 HPRP00739 348 aa17.53■□□□□ 0.4
UPF3A-211ENST00000618700 PLGP00747 810 aaPredicted RBP17.53■□□□□ 0.4
UPF3A-211ENST00000618700 HIST1H2ABP04908 130 aa17.53■□□□□ 0.4
UPF3A-211ENST00000618700 CTSSP25774 331 aa17.53■□□□□ 0.4
UPF3A-211ENST00000618700 KIR2DL2P43627 348 aaPredicted RBP17.53■□□□□ 0.4
UPF3A-211ENST00000618700 GSSP48637 474 aa17.53■□□□□ 0.4
UPF3A-211ENST00000618700 ZP4Q12836 540 aa17.53■□□□□ 0.4
UPF3A-211ENST00000618700 MS4A18Q3C1V0 323 aa17.53■□□□□ 0.4
UPF3A-211ENST00000618700 TMEM225Q6GV28 225 aa17.53■□□□□ 0.4
UPF3A-211ENST00000618700 SHQ1Q6PI26 577 aaKnown RBP17.53■□□□□ 0.4
UPF3A-211ENST00000618700 FAM214BQ7L5A3 538 aa17.53■□□□□ 0.4
UPF3A-211ENST00000618700 HIST3H2AQ7L7L0 130 aa17.53■□□□□ 0.4
UPF3A-211ENST00000618700 TUSC5Q8IXB3 177 aa17.53■□□□□ 0.4
UPF3A-211ENST00000618700 OR10G2Q8NGC3 310 aa17.53■□□□□ 0.4
UPF3A-211ENST00000618700 OR9K2Q8NGE7 335 aa17.53■□□□□ 0.4
UPF3A-211ENST00000618700 OR13C2Q8NGS9 318 aa17.53■□□□□ 0.4
UPF3A-211ENST00000618700 GIPC3Q8TF64 312 aa17.53■□□□□ 0.4
UPF3A-211ENST00000618700 STMN2Q93045 179 aa17.53■□□□□ 0.4
UPF3A-211ENST00000618700 HIST1H2ACQ93077 130 aa17.53■□□□□ 0.4
UPF3A-211ENST00000618700 PKP2Q99959 881 aa17.53■□□□□ 0.4
UPF3A-211ENST00000618700 BDH2Q9BUT1 245 aa17.53■□□□□ 0.4
UPF3A-211ENST00000618700 SFXN3Q9BWM7 321 aa17.53■□□□□ 0.4
UPF3A-211ENST00000618700 EMC3Q9P0I2 261 aa17.53■□□□□ 0.4
UPF3A-211ENST00000618700 RNF6Q9Y252 685 aa17.53■□□□□ 0.4
UPF3A-211ENST00000618700 DIDO1Q9BTC0 2240 aaKnown RBP17.52■□□□□ 0.4
UPF3A-211ENST00000618700 PCNX1Q96RV3 2341 aa17.52■□□□□ 0.4
UPF3A-211ENST00000618700 CLEC18AA5D8T8 446 aa17.52■□□□□ 0.4
UPF3A-211ENST00000618700 GPR171O14626 319 aa17.52■□□□□ 0.4
UPF3A-211ENST00000618700 TRAF3IP2O43734 574 aaPredicted RBP17.52■□□□□ 0.4
UPF3A-211ENST00000618700 IL18BPO95998 194 aa17.52■□□□□ 0.4
UPF3A-211ENST00000618700 YES1P07947 543 aa17.52■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 45.7 ms