RNA–Protein interactions for RNA: ENST00000618327.4

CIITA-213, Transcript of class II major histocompatibility complex transactivator, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene CIITA, Length 4,657 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-213ENST00000618327 PSMB10P40306 273 aa12.77□□□□□ -0.37
CIITA-213ENST00000618327 UBE2IP63279 158 aaKnown RBP12.77□□□□□ -0.37
CIITA-213ENST00000618327 LINC00696Q6ZRV3 163 aa12.77□□□□□ -0.37
CIITA-213ENST00000618327 BCDIN3DQ7Z5W3 292 aaKnown RBP12.77□□□□□ -0.37
CIITA-213ENST00000618327 OR2I1PQ8NGU4 316 aa12.77□□□□□ -0.37
CIITA-213ENST00000618327 FOXN4Q96NZ1 517 aa12.77□□□□□ -0.37
CIITA-213ENST00000618327 CHST8Q9H2A9 424 aa12.77□□□□□ -0.37
CIITA-213ENST00000618327 OR2S2Q9NQN1 319 aa12.77□□□□□ -0.37
CIITA-213ENST00000618327 NDRG4Q9ULP0 352 aaKnown RBP12.77□□□□□ -0.37
CIITA-213ENST00000618327 ERCC1P07992 297 aaPredicted RBP12.76□□□□□ -0.37
CIITA-213ENST00000618327 SLC1A3P43003 542 aa12.76□□□□□ -0.37
CIITA-213ENST00000618327 RAB5BP61020 215 aa12.76□□□□□ -0.37
CIITA-213ENST00000618327 VASNQ6EMK4 673 aa12.76□□□□□ -0.37
CIITA-213ENST00000618327 ZNF767PQ75MW2 155 aa12.76□□□□□ -0.37
CIITA-213ENST00000618327 FCAMRQ8WWV6 532 aa12.76□□□□□ -0.37
CIITA-213ENST00000618327 ARSGQ96EG1 525 aa12.76□□□□□ -0.37
CIITA-213ENST00000618327 CACNG6Q9BXT2 260 aa12.76□□□□□ -0.37
CIITA-213ENST00000618327 ANKRD10Q9NXR5 420 aa12.76□□□□□ -0.37
CIITA-213ENST00000618327 PATJQ8NI35 1801 aa12.76□□□□□ -0.37
CIITA-213ENST00000618327 TMEM221A6NGB7 291 aa12.76□□□□□ -0.37
CIITA-213ENST00000618327 H7C1C5 153 aa12.76□□□□□ -0.37
CIITA-213ENST00000618327 M0R296 226 aa12.76□□□□□ -0.37
CIITA-213ENST00000618327 F10P00742 488 aa12.76□□□□□ -0.37
CIITA-213ENST00000618327 FRKP42685 505 aaPredicted RBP12.76□□□□□ -0.37
CIITA-213ENST00000618327 LCN6P62502 163 aa12.76□□□□□ -0.37
CIITA-213ENST00000618327 CCDC58Q4VC31 144 aa12.76□□□□□ -0.37
CIITA-213ENST00000618327 FAM69AQ5T7M9 428 aa12.76□□□□□ -0.37
CIITA-213ENST00000618327 ZNF160Q9HCG1 818 aa12.76□□□□□ -0.37
CIITA-213ENST00000618327 GPATCH2Q9NW75 528 aa12.76□□□□□ -0.37
CIITA-213ENST00000618327 CYB561P49447 251 aa12.76□□□□□ -0.37
CIITA-213ENST00000618327 SNRPGP62308 76 aaKnown RBP12.76□□□□□ -0.37
CIITA-213ENST00000618327 TM9SF4Q92544 642 aa12.76□□□□□ -0.37
CIITA-213ENST00000618327 UCN3Q969E3 161 aa12.76□□□□□ -0.37
CIITA-213ENST00000618327 PFDN5Q99471 154 aa12.76□□□□□ -0.37
CIITA-213ENST00000618327 VNN3Q9NY84 501 aa12.76□□□□□ -0.37
CIITA-213ENST00000618327 NLKQ9UBE8 527 aa12.76□□□□□ -0.37
CIITA-213ENST00000618327 ICOSLGO75144 302 aa12.76□□□□□ -0.37
CIITA-213ENST00000618327 ADH7P40394 386 aa12.76□□□□□ -0.37
CIITA-213ENST00000618327 FGFBP1Q14512 234 aa12.76□□□□□ -0.37
CIITA-213ENST00000618327 COL28A1Q2UY09 1125 aa12.76□□□□□ -0.37
CIITA-213ENST00000618327 SLC43A2Q8N370 569 aa12.76□□□□□ -0.37
CIITA-213ENST00000618327 DTWD2Q8NBA8 298 aa12.76□□□□□ -0.37
CIITA-213ENST00000618327 ALG12Q9BV10 488 aa12.76□□□□□ -0.37
CIITA-213ENST00000618327 NTN4Q9HB63 628 aa12.76□□□□□ -0.37
CIITA-213ENST00000618327 C14orf166Q9Y224 244 aaKnown RBP12.76□□□□□ -0.37
CIITA-213ENST00000618327 SOCS6O14544 535 aa12.75□□□□□ -0.37
CIITA-213ENST00000618327 PTHP01270 115 aa12.75□□□□□ -0.37
CIITA-213ENST00000618327 UCHL1P09936 223 aa12.75□□□□□ -0.37
CIITA-213ENST00000618327 C1orf140Q5VVS0 124 aa12.75□□□□□ -0.37
CIITA-213ENST00000618327 MFSD8Q8NHS3 518 aa12.75□□□□□ -0.37
CIITA-213ENST00000618327 GPR148Q8TDV2 347 aa12.75□□□□□ -0.37
CIITA-213ENST00000618327 SLC41A2Q96JW4 573 aa12.75□□□□□ -0.37
CIITA-213ENST00000618327 GABARAPL3Q9BY60 117 aa12.75□□□□□ -0.37
CIITA-213ENST00000618327 SAV1Q9H4B6 383 aaPredicted RBP12.75□□□□□ -0.37
CIITA-213ENST00000618327 PCDHB16Q9NRJ7 776 aa12.75□□□□□ -0.37
CIITA-213ENST00000618327 MGAT4CQ9UBM8 478 aa12.75□□□□□ -0.37
CIITA-213ENST00000618327 FRG2CA6NGY1 282 aa12.75□□□□□ -0.37
CIITA-213ENST00000618327 ZNF705EA8MWA4 302 aaPredicted RBP12.75□□□□□ -0.37
CIITA-213ENST00000618327 NTRK2Q16620 822 aa12.75□□□□□ -0.37
CIITA-213ENST00000618327 TMPPEQ6ZT21 453 aa12.75□□□□□ -0.37
CIITA-213ENST00000618327 CCNL2Q96S94 520 aaPredicted RBP12.75□□□□□ -0.37
CIITA-213ENST00000618327 CCDC32Q9BV29 185 aa12.75□□□□□ -0.37
CIITA-213ENST00000618327 POTEKPQ9BYX7 375 aa12.75□□□□□ -0.37
CIITA-213ENST00000618327 NAA50Q9GZZ1 169 aaKnown RBP12.75□□□□□ -0.37
CIITA-213ENST00000618327 TAS2R16Q9NYV7 291 aa12.75□□□□□ -0.37
CIITA-213ENST00000618327 MOKQ9UQ07 419 aa12.75□□□□□ -0.37
CIITA-213ENST00000618327 PCYT1BQ9Y5K3 369 aaPredicted RBP12.75□□□□□ -0.37
CIITA-213ENST00000618327 GIMAP1-GIMAP5A0A087WTJ2 511 aa12.75□□□□□ -0.37
CIITA-213ENST00000618327 KDM4EB2RXH2 506 aaPredicted RBP12.75□□□□□ -0.37
CIITA-213ENST00000618327 DDAH2O95865 285 aa12.75□□□□□ -0.37
CIITA-213ENST00000618327 H2AFB2P0C5Z0 115 aa12.75□□□□□ -0.37
CIITA-213ENST00000618327 HTR1FP30939 366 aa12.75□□□□□ -0.37
CIITA-213ENST00000618327 SNRPD2P62316 118 aaKnown RBP12.75□□□□□ -0.37
CIITA-213ENST00000618327 SLC35A1P78382 337 aa12.75□□□□□ -0.37
CIITA-213ENST00000618327 TRA2AQ13595 282 aaKnown RBP eCLIP12.75□□□□□ -0.37
CIITA-213ENST00000618327 ACSM3Q53FZ2 586 aa12.75□□□□□ -0.37
CIITA-213ENST00000618327 UBE3DQ7Z6J8 389 aa12.75□□□□□ -0.37
CIITA-213ENST00000618327 PDZD9Q8IXQ8 264 aa12.75□□□□□ -0.37
CIITA-213ENST00000618327 SGCDQ92629 289 aa12.75□□□□□ -0.37
CIITA-213ENST00000618327 LAT2Q9GZY6 243 aa12.75□□□□□ -0.37
CIITA-213ENST00000618327 FSCN3Q9NQT6 498 aa12.75□□□□□ -0.37
CIITA-213ENST00000618327 LRRTM2O43300 516 aa12.74□□□□□ -0.37
CIITA-213ENST00000618327 TNFSF14O43557 240 aa12.74□□□□□ -0.37
CIITA-213ENST00000618327 SYT7O43581 403 aa12.74□□□□□ -0.37
CIITA-213ENST00000618327 IGFBP1P08833 259 aaPredicted RBP12.74□□□□□ -0.37
CIITA-213ENST00000618327 CFL1P23528 166 aaKnown RBP12.74□□□□□ -0.37
CIITA-213ENST00000618327 UGT2B10P36537 528 aa12.74□□□□□ -0.37
CIITA-213ENST00000618327 PNLIPRP2P54317 469 aa12.74□□□□□ -0.37
CIITA-213ENST00000618327 TMEM69Q5SWH9 247 aa12.74□□□□□ -0.37
CIITA-213ENST00000618327 MTFR2Q6P444 385 aa12.74□□□□□ -0.37
CIITA-213ENST00000618327 FAHD1Q6P587 224 aa12.74□□□□□ -0.37
CIITA-213ENST00000618327 ZNF704Q6ZNC4 412 aaPredicted RBP12.74□□□□□ -0.37
CIITA-213ENST00000618327 SIRT6Q8N6T7 355 aa12.74□□□□□ -0.37
CIITA-213ENST00000618327 OR8S1Q8NH09 359 aa12.74□□□□□ -0.37
CIITA-213ENST00000618327 DIMT1Q9UNQ2 313 aaKnown RBP12.74□□□□□ -0.37
CIITA-213ENST00000618327 R4GN57 208 aa12.74□□□□□ -0.37
CIITA-213ENST00000618327 RAD1O60671 282 aa12.74□□□□□ -0.37
CIITA-213ENST00000618327 ATE1O95260 518 aa12.74□□□□□ -0.37
CIITA-213ENST00000618327 GAB4Q2WGN9 574 aa12.74□□□□□ -0.37
CIITA-213ENST00000618327 OR4N2Q8NGD1 307 aa12.74□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 45.7 ms