RNA–Protein interactions for RNA: ENST00000617339.4

SHROOM1-208, Transcript of shroom family member 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SHROOM1, Length 3,638 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-208ENST00000617339 PRR23D1E9PI22 279 aaPredicted RBP13.28□□□□□ -0.28
SHROOM1-208ENST00000617339 H7C1C5 153 aa13.28□□□□□ -0.28
SHROOM1-208ENST00000617339 TNFRSF10CO14798 259 aa13.28□□□□□ -0.28
SHROOM1-208ENST00000617339 CSTAP01040 98 aa13.28□□□□□ -0.28
SHROOM1-208ENST00000617339 HLA-DPB1P04440 258 aa13.28□□□□□ -0.28
SHROOM1-208ENST00000617339 H2AFB2P0C5Z0 115 aa13.28□□□□□ -0.28
SHROOM1-208ENST00000617339 PRR23D2P0DMB1 279 aaPredicted RBP13.28□□□□□ -0.28
SHROOM1-208ENST00000617339 MAGEB1P43366 347 aa13.28□□□□□ -0.28
SHROOM1-208ENST00000617339 BLVRAP53004 296 aa13.28□□□□□ -0.28
SHROOM1-208ENST00000617339 LCN6P62502 163 aa13.28□□□□□ -0.28
SHROOM1-208ENST00000617339 ZP2Q05996 745 aa13.28□□□□□ -0.28
SHROOM1-208ENST00000617339 NSDHLQ15738 373 aa13.28□□□□□ -0.28
SHROOM1-208ENST00000617339 PRICKLE4Q2TBC4 344 aa13.28□□□□□ -0.28
SHROOM1-208ENST00000617339 EID2Q8N6I1 236 aa13.28□□□□□ -0.28
SHROOM1-208ENST00000617339 SIRT6Q8N6T7 355 aa13.28□□□□□ -0.28
SHROOM1-208ENST00000617339 GCDHQ92947 438 aaPredicted RBP13.28□□□□□ -0.28
SHROOM1-208ENST00000617339 TSSK2Q96PF2 358 aa13.28□□□□□ -0.28
SHROOM1-208ENST00000617339 ELF4Q99607 663 aaPredicted RBP13.28□□□□□ -0.28
SHROOM1-208ENST00000617339 MED18Q9BUE0 208 aa13.28□□□□□ -0.28
SHROOM1-208ENST00000617339 A0A1B0GWA3 101 aa13.27□□□□□ -0.28
SHROOM1-208ENST00000617339 DAPL1A0PJW8 107 aa13.27□□□□□ -0.28
SHROOM1-208ENST00000617339 UNC119BA6NIH7 251 aa13.27□□□□□ -0.28
SHROOM1-208ENST00000617339 SHISA7A6NL88 538 aa13.27□□□□□ -0.28
SHROOM1-208ENST00000617339 CBX7O95931 251 aa13.27□□□□□ -0.28
SHROOM1-208ENST00000617339 HK1P19367 917 aa13.27□□□□□ -0.28
SHROOM1-208ENST00000617339 DGCR2P98153 550 aa13.27□□□□□ -0.28
SHROOM1-208ENST00000617339 TPBGQ13641 420 aa13.27□□□□□ -0.28
SHROOM1-208ENST00000617339 CRMP1Q14194 572 aa13.27□□□□□ -0.28
SHROOM1-208ENST00000617339 OPCMLQ14982 345 aa13.27□□□□□ -0.28
SHROOM1-208ENST00000617339 MLC1Q15049 377 aa13.27□□□□□ -0.28
SHROOM1-208ENST00000617339 LRFN4Q6PJG9 635 aa13.27□□□□□ -0.28
SHROOM1-208ENST00000617339 TMEM99Q8N816 258 aa13.27□□□□□ -0.28
SHROOM1-208ENST00000617339 OR13C5Q8NGS8 318 aa13.27□□□□□ -0.28
SHROOM1-208ENST00000617339 NANSQ9NR45 359 aa13.27□□□□□ -0.28
SHROOM1-208ENST00000617339 DSPPQ9NZW4 1301 aa13.27□□□□□ -0.28
SHROOM1-208ENST00000617339 MKL2Q9ULH7 1088 aa13.27□□□□□ -0.28
SHROOM1-208ENST00000617339 MED31Q9Y3C7 131 aa13.27□□□□□ -0.28
SHROOM1-208ENST00000617339 AUP1Q9Y679 476 aa13.27□□□□□ -0.28
SHROOM1-208ENST00000617339 HEATR5AQ86XA9 2040 aa13.27□□□□□ -0.28
SHROOM1-208ENST00000617339 TRAPPC13A5PLN9 417 aa13.27□□□□□ -0.29
SHROOM1-208ENST00000617339 ANKRD61A6NGH8 418 aa13.27□□□□□ -0.29
SHROOM1-208ENST00000617339 C17orf105B2RV13 164 aa13.27□□□□□ -0.29
SHROOM1-208ENST00000617339 TBX19O60806 448 aa13.27□□□□□ -0.29
SHROOM1-208ENST00000617339 RNH1P13489 461 aaKnown RBP13.27□□□□□ -0.29
SHROOM1-208ENST00000617339 AHCYP23526 432 aa13.27□□□□□ -0.29
SHROOM1-208ENST00000617339 BMP8BP34820 402 aa13.27□□□□□ -0.29
SHROOM1-208ENST00000617339 BTCP35070 178 aa13.27□□□□□ -0.29
SHROOM1-208ENST00000617339 ZNF273Q14593 569 aa13.27□□□□□ -0.29
SHROOM1-208ENST00000617339 TMEM201Q5SNT2 666 aa13.27□□□□□ -0.29
SHROOM1-208ENST00000617339 BMP8AQ7Z5Y6 402 aa13.27□□□□□ -0.29
SHROOM1-208ENST00000617339 OR4C6Q8NH72 309 aa13.27□□□□□ -0.29
SHROOM1-208ENST00000617339 SLC25A36Q96CQ1 311 aa13.27□□□□□ -0.29
SHROOM1-208ENST00000617339 SCMH1Q96GD3 660 aa13.27□□□□□ -0.29
SHROOM1-208ENST00000617339 SCARF2Q96GP6 870 aaPredicted RBP13.27□□□□□ -0.29
SHROOM1-208ENST00000617339 PRR19A6NJB7 356 aa13.27□□□□□ -0.29
SHROOM1-208ENST00000617339 PRODHO43272 600 aa13.27□□□□□ -0.29
SHROOM1-208ENST00000617339 GSTM3P21266 225 aa13.27□□□□□ -0.29
SHROOM1-208ENST00000617339 ZNF136P52737 540 aa13.27□□□□□ -0.29
SHROOM1-208ENST00000617339 PSG6Q00889 435 aa13.27□□□□□ -0.29
SHROOM1-208ENST00000617339 ATRAIDQ6UW56 229 aa13.27□□□□□ -0.29
SHROOM1-208ENST00000617339 C16orf52Q8NHV5 167 aa13.27□□□□□ -0.29
SHROOM1-208ENST00000617339 MOAP1Q96BY2 351 aa13.27□□□□□ -0.29
SHROOM1-208ENST00000617339 TM4SF19Q96DZ7 209 aa13.27□□□□□ -0.29
SHROOM1-208ENST00000617339 ZDHHC12Q96GR4 267 aa13.27□□□□□ -0.29
SHROOM1-208ENST00000617339 KLHDC3Q9BQ90 382 aa13.27□□□□□ -0.29
SHROOM1-208ENST00000617339 POLDIP3Q9BY77 421 aaKnown RBP13.27□□□□□ -0.29
SHROOM1-208ENST00000617339 KCNMB2Q9Y691 235 aa13.27□□□□□ -0.29
SHROOM1-208ENST00000617339 NUP210Q8TEM1 1887 aaPredicted RBP13.26□□□□□ -0.29
SHROOM1-208ENST00000617339 IGHV1OR15-9A0A0B4J2B8 117 aa13.26□□□□□ -0.29
SHROOM1-208ENST00000617339 TRDV1A0A1B0GX56 115 aa13.26□□□□□ -0.29
SHROOM1-208ENST00000617339 RPP14O95059 124 aaKnown RBP13.26□□□□□ -0.29
SHROOM1-208ENST00000617339 CD27P26842 260 aa13.26□□□□□ -0.29
SHROOM1-208ENST00000617339 PYCR1P32322 319 aa13.26□□□□□ -0.29
SHROOM1-208ENST00000617339 SLC1A3P43003 542 aa13.26□□□□□ -0.29
SHROOM1-208ENST00000617339 PITPNBP48739 271 aa13.26□□□□□ -0.29
SHROOM1-208ENST00000617339 DEFA5Q01523 94 aa13.26□□□□□ -0.29
SHROOM1-208ENST00000617339 OC90Q02509 493 aaPredicted RBP13.26□□□□□ -0.29
SHROOM1-208ENST00000617339 OCLNQ16625 522 aa13.26□□□□□ -0.29
SHROOM1-208ENST00000617339 HYAL4Q2M3T9 481 aa13.26□□□□□ -0.29
SHROOM1-208ENST00000617339 PGGHGQ32M88 737 aa13.26□□□□□ -0.29
SHROOM1-208ENST00000617339 ARHGAP11BQ3KRB8 267 aa13.26□□□□□ -0.29
SHROOM1-208ENST00000617339 C3orf38Q5JPI3 329 aa13.26□□□□□ -0.29
SHROOM1-208ENST00000617339 LYSMD4Q5XG99 296 aa13.26□□□□□ -0.29
SHROOM1-208ENST00000617339 METAP1DQ6UB28 335 aaPredicted RBP13.26□□□□□ -0.29
SHROOM1-208ENST00000617339 WDR89Q96FK6 387 aaPredicted RBP13.26□□□□□ -0.29
SHROOM1-208ENST00000617339 OR10A4Q9H209 315 aa13.26□□□□□ -0.29
SHROOM1-208ENST00000617339 TESQ9UGI8 421 aaKnown RBP13.26□□□□□ -0.29
SHROOM1-208ENST00000617339 HS3ST3A1Q9Y663 406 aa13.26□□□□□ -0.29
SHROOM1-208ENST00000617339 ACACAQ13085 2346 aa13.26□□□□□ -0.29
SHROOM1-208ENST00000617339 L7N2F9 121 aa13.26□□□□□ -0.29
SHROOM1-208ENST00000617339 SOX1O00570 391 aaPredicted RBP13.26□□□□□ -0.29
SHROOM1-208ENST00000617339 BET1O15155 118 aa13.26□□□□□ -0.29
SHROOM1-208ENST00000617339 SIX6O95475 246 aa13.26□□□□□ -0.29
SHROOM1-208ENST00000617339 F13BP05160 661 aa13.26□□□□□ -0.29
SHROOM1-208ENST00000617339 UBE2IP63279 158 aaKnown RBP13.26□□□□□ -0.29
SHROOM1-208ENST00000617339 CDK5Q00535 292 aa13.26□□□□□ -0.29
SHROOM1-208ENST00000617339 TP53I3Q53FA7 332 aa13.26□□□□□ -0.29
SHROOM1-208ENST00000617339 CBLN3Q6UW01 205 aa13.26□□□□□ -0.29
SHROOM1-208ENST00000617339 C3P1Q6ZMU1 363 aa13.26□□□□□ -0.29
SHROOM1-208ENST00000617339 NLRC3Q7RTR2 1065 aa13.26□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms