RNA–Protein interactions for RNA: ENST00000613670.4

LIG1-221, Transcript of DNA ligase 1, humanhuman

TSL 1 (best) BASIC

Gene LIG1, Length 3,949 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-221ENST00000613670 LIPNQ5VXI9 398 aa11.59□□□□□ -0.55
LIG1-221ENST00000613670 TSSK4Q6SA08 328 aa11.59□□□□□ -0.55
LIG1-221ENST00000613670 TMUB2Q71RG4 321 aa11.59□□□□□ -0.55
LIG1-221ENST00000613670 KCTD20Q7Z5Y7 419 aa11.59□□□□□ -0.55
LIG1-221ENST00000613670 KIAA0907Q7Z7F0 614 aaPredicted RBP11.59□□□□□ -0.55
LIG1-221ENST00000613670 CD163Q86VB7 1156 aa11.59□□□□□ -0.55
LIG1-221ENST00000613670 OR9A4Q8NGU2 314 aa11.59□□□□□ -0.55
LIG1-221ENST00000613670 ST8SIA2Q92186 375 aa11.59□□□□□ -0.55
LIG1-221ENST00000613670 KCNJ15Q99712 375 aa11.59□□□□□ -0.55
LIG1-221ENST00000613670 ADGRL4Q9HBW9 690 aa11.59□□□□□ -0.55
LIG1-221ENST00000613670 IFT46Q9NQC8 304 aa11.59□□□□□ -0.55
LIG1-221ENST00000613670 PCDHB16Q9NRJ7 776 aa11.59□□□□□ -0.55
LIG1-221ENST00000613670 ING1Q9UK53 422 aaPredicted RBP11.59□□□□□ -0.55
LIG1-221ENST00000613670 A0A0A6YYC8 382 aaPredicted RBP11.59□□□□□ -0.55
LIG1-221ENST00000613670 OR2W5A6NFC9 320 aa11.59□□□□□ -0.55
LIG1-221ENST00000613670 I3L1I5 382 aaPredicted RBP11.59□□□□□ -0.55
LIG1-221ENST00000613670 GPRIN2O60269 458 aa11.59□□□□□ -0.55
LIG1-221ENST00000613670 SDC3O75056 442 aa11.59□□□□□ -0.55
LIG1-221ENST00000613670 DUSP8Q13202 625 aa11.59□□□□□ -0.55
LIG1-221ENST00000613670 RUNX2Q13950 521 aa11.59□□□□□ -0.55
LIG1-221ENST00000613670 GRM7Q14831 915 aa11.59□□□□□ -0.55
LIG1-221ENST00000613670 CDNFQ49AH0 187 aa11.59□□□□□ -0.55
LIG1-221ENST00000613670 SLC35F3Q8IY50 421 aa11.59□□□□□ -0.55
LIG1-221ENST00000613670 ZNF248Q8NDW4 579 aa11.59□□□□□ -0.55
LIG1-221ENST00000613670 OR10K1Q8NGX5 313 aa11.59□□□□□ -0.55
LIG1-221ENST00000613670 CCL4L1Q8NHW4 92 aa11.59□□□□□ -0.55
LIG1-221ENST00000613670 LINC00052Q96N35 136 aa11.59□□□□□ -0.55
LIG1-221ENST00000613670 ELF4Q99607 663 aaPredicted RBP11.59□□□□□ -0.55
LIG1-221ENST00000613670 SLC6A7Q99884 636 aa11.59□□□□□ -0.55
LIG1-221ENST00000613670 TBC1D29Q9UFV1 150 aa11.59□□□□□ -0.55
LIG1-221ENST00000613670 ZNF346Q9UL40 294 aaKnown RBP11.59□□□□□ -0.55
LIG1-221ENST00000613670 ATXN7L1Q9ULK2 861 aaPredicted RBP11.59□□□□□ -0.55
LIG1-221ENST00000613670 RABL2BQ9UNT1 228 aa11.59□□□□□ -0.55
LIG1-221ENST00000613670 A0A1W2PPV9 198 aa11.58□□□□□ -0.56
LIG1-221ENST00000613670 SCDO00767 359 aa11.58□□□□□ -0.56
LIG1-221ENST00000613670 CDC40O60508 579 aaKnown RBP eCLIP11.58□□□□□ -0.56
LIG1-221ENST00000613670 RLN2P04090 185 aa11.58□□□□□ -0.56
LIG1-221ENST00000613670 ZGLP1P0C6A0 271 aa11.58□□□□□ -0.56
LIG1-221ENST00000613670 ZNF85Q03923 595 aa11.58□□□□□ -0.56
LIG1-221ENST00000613670 DYRK1AQ13627 763 aa11.58□□□□□ -0.56
LIG1-221ENST00000613670 FAM78AQ5JUQ0 283 aa11.58□□□□□ -0.56
LIG1-221ENST00000613670 GPR148Q8TDV2 347 aa11.58□□□□□ -0.56
LIG1-221ENST00000613670 SPACA7Q96KW9 195 aa11.58□□□□□ -0.56
LIG1-221ENST00000613670 GPR137Q96N19 417 aa11.58□□□□□ -0.56
LIG1-221ENST00000613670 ASF1BQ9NVP2 202 aa11.58□□□□□ -0.56
LIG1-221ENST00000613670 MBD2Q9UBB5 411 aa11.58□□□□□ -0.56
LIG1-221ENST00000613670 DAPP1Q9UN19 280 aa11.58□□□□□ -0.56
LIG1-221ENST00000613670 TANC1Q9C0D5 1861 aa11.58□□□□□ -0.56
LIG1-221ENST00000613670 A0A1B0GTH9 108 aa11.58□□□□□ -0.56
LIG1-221ENST00000613670 TSPAN11A1L157 253 aa11.58□□□□□ -0.56
LIG1-221ENST00000613670 C7orf66A4D0T2 115 aa11.58□□□□□ -0.56
LIG1-221ENST00000613670 M0QYG6 137 aa11.58□□□□□ -0.56
LIG1-221ENST00000613670 HCRTR2O43614 444 aa11.58□□□□□ -0.56
LIG1-221ENST00000613670 TBX6O95947 436 aaPredicted RBP11.58□□□□□ -0.56
LIG1-221ENST00000613670 AK1P00568 194 aa11.58□□□□□ -0.56
LIG1-221ENST00000613670 EGFP01133 1207 aa11.58□□□□□ -0.56
LIG1-221ENST00000613670 ADRB1P08588 477 aa11.58□□□□□ -0.56
LIG1-221ENST00000613670 RAB40ALP0C0E4 278 aa11.58□□□□□ -0.56
LIG1-221ENST00000613670 IFNGR1P15260 489 aa11.58□□□□□ -0.56
LIG1-221ENST00000613670 PPP3CBP16298 524 aa11.58□□□□□ -0.56
LIG1-221ENST00000613670 ITGB8P26012 769 aa11.58□□□□□ -0.56
LIG1-221ENST00000613670 HTR2AP28223 471 aa11.58□□□□□ -0.56
LIG1-221ENST00000613670 FRKP42685 505 aaPredicted RBP11.58□□□□□ -0.56
LIG1-221ENST00000613670 TAS2R20P59543 309 aa11.58□□□□□ -0.56
LIG1-221ENST00000613670 RUNX3Q13761 415 aa11.58□□□□□ -0.56
LIG1-221ENST00000613670 RBMS2Q15434 407 aaKnown RBP11.58□□□□□ -0.56
LIG1-221ENST00000613670 RAB40AQ8WXH6 277 aa11.58□□□□□ -0.56
LIG1-221ENST00000613670 MS4A3Q96HJ5 214 aa11.58□□□□□ -0.56
LIG1-221ENST00000613670 CXorf58Q96LI9 332 aa11.58□□□□□ -0.56
LIG1-221ENST00000613670 ACTR10Q9NZ32 417 aa11.58□□□□□ -0.56
LIG1-221ENST00000613670 LINC00862A6NCI5 91 aa11.58□□□□□ -0.56
LIG1-221ENST00000613670 B4DGG1 531 aa11.58□□□□□ -0.56
LIG1-221ENST00000613670 PYCARD-AS1I3L0S3 204 aa11.58□□□□□ -0.56
LIG1-221ENST00000613670 HLA-DQB1P01920 261 aa11.58□□□□□ -0.56
LIG1-221ENST00000613670 TFPIP10646 304 aa11.58□□□□□ -0.56
LIG1-221ENST00000613670 AKR1C4P17516 323 aa11.58□□□□□ -0.56
LIG1-221ENST00000613670 IL32P24001 234 aa11.58□□□□□ -0.56
LIG1-221ENST00000613670 MC2RQ01718 297 aa11.58□□□□□ -0.56
LIG1-221ENST00000613670 RAB11BQ15907 218 aa11.58□□□□□ -0.56
LIG1-221ENST00000613670 PRR22Q8IZ63 422 aa11.58□□□□□ -0.56
LIG1-221ENST00000613670 C5orf34Q96MH7 638 aa11.58□□□□□ -0.56
LIG1-221ENST00000613670 SORCS2Q96PQ0 1159 aa11.58□□□□□ -0.56
LIG1-221ENST00000613670 RSPO3Q9BXY4 272 aaPredicted RBP11.58□□□□□ -0.56
LIG1-221ENST00000613670 KRBOX1C9JBD0 128 aa11.57□□□□□ -0.56
LIG1-221ENST00000613670 H3BUI4 141 aa11.57□□□□□ -0.56
LIG1-221ENST00000613670 ZNF823P16415 610 aa11.57□□□□□ -0.56
LIG1-221ENST00000613670 ENPP1P22413 925 aa11.57□□□□□ -0.56
LIG1-221ENST00000613670 LILRA6Q6PI73 481 aa11.57□□□□□ -0.56
LIG1-221ENST00000613670 SPAG16Q8N0X2 631 aa11.57□□□□□ -0.56
LIG1-221ENST00000613670 OR4N2Q8NGD1 307 aa11.57□□□□□ -0.56
LIG1-221ENST00000613670 FGF13Q92913 245 aa11.57□□□□□ -0.56
LIG1-221ENST00000613670 CPNE2Q96FN4 548 aaPredicted RBP11.57□□□□□ -0.56
LIG1-221ENST00000613670 RBP7Q96R05 134 aa11.57□□□□□ -0.56
LIG1-221ENST00000613670 AIFM2Q9BRQ8 373 aa11.57□□□□□ -0.56
LIG1-221ENST00000613670 SERGEFQ9UGK8 458 aa11.57□□□□□ -0.56
LIG1-221ENST00000613670 DHDHQ9UQ10 334 aa11.57□□□□□ -0.56
LIG1-221ENST00000613670 ERVK-19Q9WJR5 959 aa11.57□□□□□ -0.56
LIG1-221ENST00000613670 H0Y8X5 98 aa11.57□□□□□ -0.56
LIG1-221ENST00000613670 CCSO14618 274 aa11.57□□□□□ -0.56
LIG1-221ENST00000613670 MPC2O95563 127 aa11.57□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 49.7 ms