RNA–Protein interactions for RNA: ENST00000611481.1

LINC00540-201, long intergenic non-protein coding RNA 540, humanhuman

TSL 4

Gene LINC00540, Length 588 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-201ENST00000611481 PLAC1Q9HBJ0 212 aa3.73□□□□□ -1.81
LINC00540-201ENST00000611481 ACKR4Q9NPB9 350 aa3.73□□□□□ -1.81
LINC00540-201ENST00000611481 UBE2TQ9NPD8 197 aaPredicted RBP3.73□□□□□ -1.81
LINC00540-201ENST00000611481 KRCC1Q9NPI7 259 aaPredicted RBP3.73□□□□□ -1.81
LINC00540-201ENST00000611481 HINT3Q9NQE9 182 aaKnown RBP3.73□□□□□ -1.81
LINC00540-201ENST00000611481 ACSS1Q9NUB1 689 aaPredicted RBP3.73□□□□□ -1.81
LINC00540-201ENST00000611481 ZCCHC3Q9NUD5 404 aaKnown RBP3.73□□□□□ -1.81
LINC00540-201ENST00000611481 ZNHIT6Q9NWK9 470 aaKnown RBP3.73□□□□□ -1.81
LINC00540-201ENST00000611481 TTC7AQ9ULT0 858 aaPredicted RBP3.73□□□□□ -1.81
LINC00540-201ENST00000611481 ASF1AQ9Y294 204 aa3.73□□□□□ -1.81
LINC00540-201ENST00000611481 SPACA6W5XKT8 324 aa3.73□□□□□ -1.81
LINC00540-201ENST00000611481 MED12LQ86YW9 2145 aa3.73□□□□□ -1.81
LINC00540-201ENST00000611481 NINQ8N4C6 2090 aa3.72□□□□□ -1.81
LINC00540-201ENST00000611481 HERC1Q15751 4861 aa3.72□□□□□ -1.81
LINC00540-201ENST00000611481 A0A1W2PNV4 684 aa3.72□□□□□ -1.81
LINC00540-201ENST00000611481 CXorf65A6NEN9 183 aa3.72□□□□□ -1.81
LINC00540-201ENST00000611481 BECN2A8MW95 431 aa3.72□□□□□ -1.81
LINC00540-201ENST00000611481 H0YGG7 62 aa3.72□□□□□ -1.81
LINC00540-201ENST00000611481 CETN3O15182 167 aa3.72□□□□□ -1.81
LINC00540-201ENST00000611481 SPRY3O43610 288 aa3.72□□□□□ -1.81
LINC00540-201ENST00000611481 TBX19O60806 448 aa3.72□□□□□ -1.81
LINC00540-201ENST00000611481 OR2J2O76002 312 aa3.72□□□□□ -1.81
LINC00540-201ENST00000611481 TGM6O95932 706 aa3.72□□□□□ -1.81
LINC00540-201ENST00000611481 P04436 131 aa3.72□□□□□ -1.81
LINC00540-201ENST00000611481 PRSS2P07478 247 aa3.72□□□□□ -1.81
LINC00540-201ENST00000611481 CALCBP10092 127 aa3.72□□□□□ -1.81
LINC00540-201ENST00000611481 TFPIP10646 304 aa3.72□□□□□ -1.81
LINC00540-201ENST00000611481 CD22P20273 847 aa3.72□□□□□ -1.81
LINC00540-201ENST00000611481 TBXA2RP21731 343 aa3.72□□□□□ -1.81
LINC00540-201ENST00000611481 OMGP23515 440 aa3.72□□□□□ -1.81
LINC00540-201ENST00000611481 CHATP28329 748 aa3.72□□□□□ -1.81
LINC00540-201ENST00000611481 PIGAP37287 484 aa3.72□□□□□ -1.81
LINC00540-201ENST00000611481 SOX3P41225 446 aa3.72□□□□□ -1.81
LINC00540-201ENST00000611481 SSR1P43307 286 aaKnown RBP3.72□□□□□ -1.81
LINC00540-201ENST00000611481 CDX1P47902 265 aaPredicted RBP3.72□□□□□ -1.81
LINC00540-201ENST00000611481 CD151P48509 253 aa3.72□□□□□ -1.81
LINC00540-201ENST00000611481 PDLIM4P50479 330 aa3.72□□□□□ -1.81
LINC00540-201ENST00000611481 RASSF2P50749 326 aa3.72□□□□□ -1.81
LINC00540-201ENST00000611481 DVL1P1P54792 670 aaPredicted RBP3.72□□□□□ -1.81
LINC00540-201ENST00000611481 ATP5IP56385 69 aaPredicted RBP3.72□□□□□ -1.81
LINC00540-201ENST00000611481 UBE2HP62256 183 aa3.72□□□□□ -1.81
LINC00540-201ENST00000611481 EEF1A1P68104 462 aaKnown RBP3.72□□□□□ -1.81
LINC00540-201ENST00000611481 POU3F1Q03052 451 aaPredicted RBP3.72□□□□□ -1.81
LINC00540-201ENST00000611481 EXOC3L2Q2M3D2 409 aa3.72□□□□□ -1.81
LINC00540-201ENST00000611481 KRT71Q3SY84 523 aa3.72□□□□□ -1.81
LINC00540-201ENST00000611481 SLC36A3Q495N2 470 aa3.72□□□□□ -1.81
LINC00540-201ENST00000611481 BCL7AQ4VC05 210 aa3.72□□□□□ -1.81
LINC00540-201ENST00000611481 DCST1Q5T197 706 aa3.72□□□□□ -1.81
LINC00540-201ENST00000611481 EEF1A1P5Q5VTE0 462 aa3.72□□□□□ -1.81
LINC00540-201ENST00000611481 AGAP6Q5VW22 663 aa3.72□□□□□ -1.81
LINC00540-201ENST00000611481 SULT1C3Q6IMI6 304 aa3.72□□□□□ -1.81
LINC00540-201ENST00000611481 AAGABQ6PD74 315 aa3.72□□□□□ -1.81
LINC00540-201ENST00000611481 FAM151BQ6UXP7 276 aa3.72□□□□□ -1.81
LINC00540-201ENST00000611481 RTL4Q6ZR62 310 aa3.72□□□□□ -1.81
LINC00540-201ENST00000611481 ARCQ7LC44 396 aa3.72□□□□□ -1.81
LINC00540-201ENST00000611481 C16orf82Q7Z2V1 217 aa3.72□□□□□ -1.81
LINC00540-201ENST00000611481 SERPINA11Q86U17 422 aa3.72□□□□□ -1.81
LINC00540-201ENST00000611481 RTN4RL2Q86UN3 420 aa3.72□□□□□ -1.81
LINC00540-201ENST00000611481 ANKRD46Q86W74 232 aa3.72□□□□□ -1.81
LINC00540-201ENST00000611481 DENND6AQ8IWF6 608 aa3.72□□□□□ -1.81
LINC00540-201ENST00000611481 GPALPP1Q8IXQ4 340 aa3.72□□□□□ -1.81
LINC00540-201ENST00000611481 CSNK1A1LQ8N752 337 aa3.72□□□□□ -1.81
LINC00540-201ENST00000611481 SCCPDHQ8NBX0 429 aa3.72□□□□□ -1.81
LINC00540-201ENST00000611481 DDHD1Q8NEL9 900 aa3.72□□□□□ -1.81
LINC00540-201ENST00000611481 OR9A4Q8NGU2 314 aa3.72□□□□□ -1.81
LINC00540-201ENST00000611481 OR51Q1Q8NH59 317 aa3.72□□□□□ -1.81
LINC00540-201ENST00000611481 JOSD2Q8TAC2 188 aa3.72□□□□□ -1.81
LINC00540-201ENST00000611481 ASZ1Q8WWH4 475 aa3.72□□□□□ -1.81
LINC00540-201ENST00000611481 SLC35C1Q96A29 364 aa3.72□□□□□ -1.81
LINC00540-201ENST00000611481 STARD4Q96DR4 205 aa3.72□□□□□ -1.81
LINC00540-201ENST00000611481 PGM2Q96G03 612 aa3.72□□□□□ -1.81
LINC00540-201ENST00000611481 JSRP1Q96MG2 331 aaPredicted RBP3.72□□□□□ -1.81
LINC00540-201ENST00000611481 FOXN4Q96NZ1 517 aa3.72□□□□□ -1.81
LINC00540-201ENST00000611481 CITED1Q99966 193 aa3.72□□□□□ -1.81
LINC00540-201ENST00000611481 TUBA1CQ9BQE3 449 aa3.72□□□□□ -1.81
LINC00540-201ENST00000611481 FICDQ9BVA6 458 aa3.72□□□□□ -1.81
LINC00540-201ENST00000611481 RSPO3Q9BXY4 272 aaPredicted RBP3.72□□□□□ -1.81
LINC00540-201ENST00000611481 UGT2B28Q9BY64 529 aa3.72□□□□□ -1.81
LINC00540-201ENST00000611481 MAP6D1Q9H9H5 199 aa3.72□□□□□ -1.81
LINC00540-201ENST00000611481 MYNNQ9NPC7 610 aa3.72□□□□□ -1.81
LINC00540-201ENST00000611481 SPAG4Q9NPE6 437 aa3.72□□□□□ -1.81
LINC00540-201ENST00000611481 FAIMQ9NVQ4 179 aa3.72□□□□□ -1.81
LINC00540-201ENST00000611481 NECAP2Q9NVZ3 263 aa3.72□□□□□ -1.81
LINC00540-201ENST00000611481 CISD1Q9NZ45 108 aaKnown RBP3.72□□□□□ -1.81
LINC00540-201ENST00000611481 CNOT2Q9NZN8 540 aaKnown RBP3.72□□□□□ -1.81
LINC00540-201ENST00000611481 CIDEBQ9UHD4 219 aa3.72□□□□□ -1.81
LINC00540-201ENST00000611481 BAIAP2L1Q9UHR4 511 aa3.72□□□□□ -1.81
LINC00540-201ENST00000611481 DNAJC12Q9UKB3 198 aa3.72□□□□□ -1.81
LINC00540-201ENST00000611481 PSME2Q9UL46 239 aa3.72□□□□□ -1.81
LINC00540-201ENST00000611481 RNF150Q9ULK6 438 aa3.72□□□□□ -1.81
LINC00540-201ENST00000611481 MGAT4BQ9UQ53 548 aa3.72□□□□□ -1.81
LINC00540-201ENST00000611481 RUVBL2Q9Y230 463 aaKnown RBP3.72□□□□□ -1.81
LINC00540-201ENST00000611481 YARS2Q9Y2Z4 477 aaKnown RBP3.72□□□□□ -1.81
LINC00540-201ENST00000611481 SLC6A5Q9Y345 797 aa3.72□□□□□ -1.81
LINC00540-201ENST00000611481 CHTOPQ9Y3Y2 248 aaKnown RBP3.72□□□□□ -1.81
LINC00540-201ENST00000611481 ATG4BQ9Y4P1 393 aa3.72□□□□□ -1.81
LINC00540-201ENST00000611481 EXPH5Q8NEV8 1989 aa3.72□□□□□ -1.81
LINC00540-201ENST00000611481 ANKDD1BA6NHY2 528 aa3.71□□□□□ -1.82
LINC00540-201ENST00000611481 SAGE2PA6NJ88 616 aa3.71□□□□□ -1.82
LINC00540-201ENST00000611481 A8MUA0 341 aa3.71□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms