RNA–Protein interactions for RNA: ENST00000600310.5

UPF1-209, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 750 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-209ENST00000600310 GALNT5Q7Z7M9 940 aa17.19■□□□□ 0.34
UPF1-209ENST00000600310 NRMQ8IXM6 262 aa17.19■□□□□ 0.34
UPF1-209ENST00000600310 OR9K2Q8NGE7 335 aa17.19■□□□□ 0.34
UPF1-209ENST00000600310 OR5J2Q8NH18 312 aa17.19■□□□□ 0.34
UPF1-209ENST00000600310 OXGR1Q96P68 337 aa17.19■□□□□ 0.34
UPF1-209ENST00000600310 CHID1Q9BWS9 393 aa17.19■□□□□ 0.34
UPF1-209ENST00000600310 PROCRQ9UNN8 238 aa17.19■□□□□ 0.34
UPF1-209ENST00000600310 FLVCR1Q9Y5Y0 555 aa17.19■□□□□ 0.34
UPF1-209ENST00000600310 A8MXE2 369 aa17.18■□□□□ 0.34
UPF1-209ENST00000600310 EEF1E1-BLOC1S5C9J1V9 151 aa17.18■□□□□ 0.34
UPF1-209ENST00000600310 PLPP3O14495 311 aa17.18■□□□□ 0.34
UPF1-209ENST00000600310 EEF1E1O43324 174 aaKnown RBP17.18■□□□□ 0.34
UPF1-209ENST00000600310 SMNDC1O75940 238 aaKnown RBP eCLIP17.18■□□□□ 0.34
UPF1-209ENST00000600310 KRT36O76013 467 aa17.18■□□□□ 0.34
UPF1-209ENST00000600310 CLDN1O95832 211 aa17.18■□□□□ 0.34
UPF1-209ENST00000600310 ASAH2BP0C7U1 165 aa17.18■□□□□ 0.34
UPF1-209ENST00000600310 IFI30P13284 250 aa17.18■□□□□ 0.34
UPF1-209ENST00000600310 FUT1P19526 365 aa17.18■□□□□ 0.34
UPF1-209ENST00000600310 ASCL1P50553 236 aa17.18■□□□□ 0.34
UPF1-209ENST00000600310 HMGA2P52926 109 aa17.18■□□□□ 0.34
UPF1-209ENST00000600310 TFF3Q07654 80 aa17.18■□□□□ 0.34
UPF1-209ENST00000600310 PMS2P3Q13401 168 aa17.18■□□□□ 0.34
UPF1-209ENST00000600310 TBPL2Q6SJ96 375 aa17.18■□□□□ 0.34
UPF1-209ENST00000600310 RRM2BQ7LG56 351 aa17.18■□□□□ 0.34
UPF1-209ENST00000600310 GPAT4Q86UL3 456 aa17.18■□□□□ 0.34
UPF1-209ENST00000600310 KDM8Q8N371 416 aa17.18■□□□□ 0.34
UPF1-209ENST00000600310 LRRC17Q8N6Y2 441 aa17.18■□□□□ 0.34
UPF1-209ENST00000600310 PAPD5Q8NDF8 572 aaKnown RBP17.18■□□□□ 0.34
UPF1-209ENST00000600310 OR52J3Q8NH60 311 aa17.18■□□□□ 0.34
UPF1-209ENST00000600310 ZNF775Q96BV0 537 aaPredicted RBP17.18■□□□□ 0.34
UPF1-209ENST00000600310 CCM2LQ9NUG4 571 aaPredicted RBP17.18■□□□□ 0.34
UPF1-209ENST00000600310 B3GAT1Q9P2W7 334 aa17.18■□□□□ 0.34
UPF1-209ENST00000600310 DOPEY2Q9Y3R5 2298 aa17.17■□□□□ 0.34
UPF1-209ENST00000600310 MS4A18H0YCH9 400 aa17.17■□□□□ 0.34
UPF1-209ENST00000600310 HIST1H2ABP04908 130 aa17.17■□□□□ 0.34
UPF1-209ENST00000600310 NQO1P15559 274 aaKnown RBP17.17■□□□□ 0.34
UPF1-209ENST00000600310 ERFP50548 548 aa17.17■□□□□ 0.34
UPF1-209ENST00000600310 SEC23BQ15437 767 aa17.17■□□□□ 0.34
UPF1-209ENST00000600310 MS4A18Q3C1V0 323 aa17.17■□□□□ 0.34
UPF1-209ENST00000600310 OR2T5Q6IEZ7 315 aa17.17■□□□□ 0.34
UPF1-209ENST00000600310 CREB3L2Q70SY1 520 aa17.17■□□□□ 0.34
UPF1-209ENST00000600310 HIST3H2AQ7L7L0 130 aa17.17■□□□□ 0.34
UPF1-209ENST00000600310 ZIC4Q8N9L1 334 aa17.17■□□□□ 0.34
UPF1-209ENST00000600310 ZNF610Q8N9Z0 462 aa17.17■□□□□ 0.34
UPF1-209ENST00000600310 OR2T29Q8NH02 315 aa17.17■□□□□ 0.34
UPF1-209ENST00000600310 HIST1H2ACQ93077 130 aa17.17■□□□□ 0.34
UPF1-209ENST00000600310 TMEM45BQ96B21 275 aa17.17■□□□□ 0.34
UPF1-209ENST00000600310 BPIFA2Q96DR5 249 aa17.17■□□□□ 0.34
UPF1-209ENST00000600310 ALPK1Q96QP1 1244 aa17.17■□□□□ 0.34
UPF1-209ENST00000600310 OPN3Q9H1Y3 402 aaPredicted RBP17.17■□□□□ 0.34
UPF1-209ENST00000600310 C12orf49Q9H741 205 aa17.17■□□□□ 0.34
UPF1-209ENST00000600310 FANCFQ9NPI8 374 aa17.17■□□□□ 0.34
UPF1-209ENST00000600310 NOSIPQ9Y314 301 aaKnown RBP17.17■□□□□ 0.34
UPF1-209ENST00000600310 INTS1Q8N201 2190 aaKnown RBP17.16■□□□□ 0.34
UPF1-209ENST00000600310 A1L4Q6 167 aa17.16■□□□□ 0.34
UPF1-209ENST00000600310 SH3PXD2BA1X283 911 aa17.16■□□□□ 0.34
UPF1-209ENST00000600310 HPRP00739 348 aa17.16■□□□□ 0.34
UPF1-209ENST00000600310 ZNF43P17038 809 aa17.16■□□□□ 0.34
UPF1-209ENST00000600310 NTF4P34130 210 aa17.16■□□□□ 0.34
UPF1-209ENST00000600310 LIMS1P48059 325 aa17.16■□□□□ 0.34
UPF1-209ENST00000600310 PUDPQ08623 228 aa17.16■□□□□ 0.34
UPF1-209ENST00000600310 ZP4Q12836 540 aa17.16■□□□□ 0.34
UPF1-209ENST00000600310 CCNIQ14094 377 aa17.16■□□□□ 0.34
UPF1-209ENST00000600310 ZNF474Q6S9Z5 364 aaPredicted RBP17.16■□□□□ 0.34
UPF1-209ENST00000600310 TFAP2EQ6VUC0 442 aa17.16■□□□□ 0.34
UPF1-209ENST00000600310 TMPRSS11FQ6ZWK6 438 aa17.16■□□□□ 0.34
UPF1-209ENST00000600310 LUZP2Q86TE4 346 aa17.16■□□□□ 0.34
UPF1-209ENST00000600310 EPHX4Q8IUS5 362 aa17.16■□□□□ 0.34
UPF1-209ENST00000600310 OR4K5Q8NGD3 323 aa17.16■□□□□ 0.34
UPF1-209ENST00000600310 RNASE6Q93091 150 aaKnown RBP17.16■□□□□ 0.34
UPF1-209ENST00000600310 SLCO4A1Q96BD0 722 aa17.16■□□□□ 0.34
UPF1-209ENST00000600310 LRRC46Q96FV0 321 aa17.16■□□□□ 0.34
UPF1-209ENST00000600310 RSRC1Q96IZ7 334 aaKnown RBP17.16■□□□□ 0.34
UPF1-209ENST00000600310 ZNF385AQ96PM9 386 aaKnown RBP17.16■□□□□ 0.34
UPF1-209ENST00000600310 TAS2R5Q9NYW4 299 aa17.16■□□□□ 0.34
UPF1-209ENST00000600310 FOXD3Q9UJU5 478 aaPredicted RBP17.16■□□□□ 0.34
UPF1-209ENST00000600310 TMEM5Q9Y2B1 443 aa17.16■□□□□ 0.34
UPF1-209ENST00000600310 LYVE1Q9Y5Y7 322 aa17.16■□□□□ 0.34
UPF1-209ENST00000600310 USP9XQ93008 2570 aaPredicted RBP17.15■□□□□ 0.34
UPF1-209ENST00000600310 TNFRSF11BO00300 401 aa17.15■□□□□ 0.34
UPF1-209ENST00000600310 FKBP6O75344 327 aa17.15■□□□□ 0.34
UPF1-209ENST00000600310 OR6A2O95222 327 aa17.15■□□□□ 0.34
UPF1-209ENST00000600310 MAKP20794 623 aa17.15■□□□□ 0.34
UPF1-209ENST00000600310 OMPP47874 163 aa17.15■□□□□ 0.34
UPF1-209ENST00000600310 OR3A2P47893 321 aa17.15■□□□□ 0.34
UPF1-209ENST00000600310 C1DQ13901 141 aaKnown RBP17.15■□□□□ 0.34
UPF1-209ENST00000600310 NANOGNBQ7Z5D8 188 aa17.15■□□□□ 0.34
UPF1-209ENST00000600310 PXKQ7Z7A4 578 aa17.15■□□□□ 0.34
UPF1-209ENST00000600310 STK32CQ86UX6 486 aa17.15■□□□□ 0.34
UPF1-209ENST00000600310 CDK20Q8IZL9 346 aa17.15■□□□□ 0.34
UPF1-209ENST00000600310 OR4C15Q8NGM1 316 aa17.15■□□□□ 0.34
UPF1-209ENST00000600310 DUS3LQ96G46 650 aaKnown RBP17.15■□□□□ 0.34
UPF1-209ENST00000600310 RBM24Q9BX46 236 aaKnown RBP17.15■□□□□ 0.34
UPF1-209ENST00000600310 YY1AP1Q9H869 796 aa17.15■□□□□ 0.34
UPF1-209ENST00000600310 PARPBPQ9NWS1 579 aa17.15■□□□□ 0.34
UPF1-209ENST00000600310 TMCC3Q9ULS5 477 aa17.15■□□□□ 0.34
UPF1-209ENST00000600310 DOPEY1Q5JWR5 2465 aa17.15■□□□□ 0.34
UPF1-209ENST00000600310 EFCAB9A8MZ26 197 aa17.14■□□□□ 0.33
UPF1-209ENST00000600310 PRSS44E7EML9 344 aa17.14■□□□□ 0.33
UPF1-209ENST00000600310 MRPL33O75394 65 aaKnown RBP17.14■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 47 ms