RNA–Protein interactions for RNA: ENST00000600012.5

UPF1-208, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 5

Gene UPF1, Length 501 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-208ENST00000600012 ZNF41P51814 821 aaPredicted RBP11.36□□□□□ -0.59
UPF1-208ENST00000600012 MERTKQ12866 999 aa11.36□□□□□ -0.59
UPF1-208ENST00000600012 DAZAP2Q15038 168 aaPredicted RBP11.36□□□□□ -0.59
UPF1-208ENST00000600012 PLPPR5Q32ZL2 321 aa11.36□□□□□ -0.59
UPF1-208ENST00000600012 NHSL2Q5HYW2 709 aa11.36□□□□□ -0.59
UPF1-208ENST00000600012 TIGD3Q6B0B8 471 aa11.36□□□□□ -0.59
UPF1-208ENST00000600012 C1orf94Q6P1W5 598 aa11.36□□□□□ -0.59
UPF1-208ENST00000600012 KLHL17Q6TDP4 642 aa11.36□□□□□ -0.59
UPF1-208ENST00000600012 PAMR1Q6UXH9 720 aa11.36□□□□□ -0.59
UPF1-208ENST00000600012 LINC00114Q6XXX2 140 aa11.36□□□□□ -0.59
UPF1-208ENST00000600012 GRINAQ7Z429 371 aa11.36□□□□□ -0.59
UPF1-208ENST00000600012 KIF18BQ86Y91 864 aa11.36□□□□□ -0.59
UPF1-208ENST00000600012 OR1J4Q8NGS1 313 aa11.36□□□□□ -0.59
UPF1-208ENST00000600012 GNPDA2Q8TDQ7 276 aa11.36□□□□□ -0.59
UPF1-208ENST00000600012 TMEM234Q8WY98 164 aa11.36□□□□□ -0.59
UPF1-208ENST00000600012 ST8SIA1Q92185 356 aa11.36□□□□□ -0.59
UPF1-208ENST00000600012 HS6ST2Q96MM7 605 aa11.36□□□□□ -0.59
UPF1-208ENST00000600012 RDH12Q96NR8 316 aa11.36□□□□□ -0.59
UPF1-208ENST00000600012 TIMP4Q99727 224 aa11.36□□□□□ -0.59
UPF1-208ENST00000600012 PRDM14Q9GZV8 571 aa11.36□□□□□ -0.59
UPF1-208ENST00000600012 MEPEQ9NQ76 525 aaPredicted RBP11.36□□□□□ -0.59
UPF1-208ENST00000600012 C20orf141Q9NUB4 165 aa11.36□□□□□ -0.59
UPF1-208ENST00000600012 MED31Q9Y3C7 131 aa11.36□□□□□ -0.59
UPF1-208ENST00000600012 MAP1AP78559 2803 aaPredicted RBP11.36□□□□□ -0.59
UPF1-208ENST00000600012 TMED7-TICAM2A0A0A6YYA0 188 aa11.35□□□□□ -0.59
UPF1-208ENST00000600012 TMEM72A0PK05 275 aa11.35□□□□□ -0.59
UPF1-208ENST00000600012 TUBAL3A6NHL2 446 aa11.35□□□□□ -0.59
UPF1-208ENST00000600012 TRAPPC6AO75865 159 aa11.35□□□□□ -0.59
UPF1-208ENST00000600012 SOX14O95416 240 aa11.35□□□□□ -0.59
UPF1-208ENST00000600012 HPNP05981 417 aa11.35□□□□□ -0.59
UPF1-208ENST00000600012 IGFBP1P08833 259 aaPredicted RBP11.35□□□□□ -0.59
UPF1-208ENST00000600012 PNMTP11086 282 aa11.35□□□□□ -0.59
UPF1-208ENST00000600012 FUT1P19526 365 aa11.35□□□□□ -0.59
UPF1-208ENST00000600012 MAKP20794 623 aa11.35□□□□□ -0.59
UPF1-208ENST00000600012 IFNGR2P38484 337 aa11.35□□□□□ -0.59
UPF1-208ENST00000600012 POLR2HP52434 150 aaKnown RBP11.35□□□□□ -0.59
UPF1-208ENST00000600012 RFX4Q33E94 735 aa11.35□□□□□ -0.59
UPF1-208ENST00000600012 NSUN5P2Q63ZY6 315 aa11.35□□□□□ -0.59
UPF1-208ENST00000600012 VASNQ6EMK4 673 aa11.35□□□□□ -0.59
UPF1-208ENST00000600012 DHRSXQ8N5I4 330 aa11.35□□□□□ -0.59
UPF1-208ENST00000600012 OR5M1Q8NGP8 315 aa11.35□□□□□ -0.59
UPF1-208ENST00000600012 POC1BQ8TC44 478 aa11.35□□□□□ -0.59
UPF1-208ENST00000600012 C1GALT1C1Q96EU7 318 aa11.35□□□□□ -0.59
UPF1-208ENST00000600012 DNAJA3Q96EY1 480 aa11.35□□□□□ -0.59
UPF1-208ENST00000600012 GNRHR2Q96P88 292 aa11.35□□□□□ -0.59
UPF1-208ENST00000600012 GABARAPL3Q9BY60 117 aa11.35□□□□□ -0.59
UPF1-208ENST00000600012 UBQLN3Q9H347 655 aa11.35□□□□□ -0.59
UPF1-208ENST00000600012 PTGES2Q9H7Z7 377 aa11.35□□□□□ -0.59
UPF1-208ENST00000600012 C12orf10Q9HB07 376 aa11.35□□□□□ -0.59
UPF1-208ENST00000600012 KRCC1Q9NPI7 259 aaPredicted RBP11.35□□□□□ -0.59
UPF1-208ENST00000600012 DLL4Q9NR61 685 aa11.35□□□□□ -0.59
UPF1-208ENST00000600012 RAB26Q9ULW5 256 aa11.35□□□□□ -0.59
UPF1-208ENST00000600012 TMED7Q9Y3B3 224 aa11.35□□□□□ -0.59
UPF1-208ENST00000600012 LRRC42Q9Y546 428 aa11.35□□□□□ -0.59
UPF1-208ENST00000600012 HRNRQ86YZ3 2850 aaPredicted RBP11.35□□□□□ -0.59
UPF1-208ENST00000600012 NIPBLQ6KC79 2804 aaeCLIP11.34□□□□□ -0.59
UPF1-208ENST00000600012 CD8B2A6NJW9 211 aa11.34□□□□□ -0.59
UPF1-208ENST00000600012 KDM4EB2RXH2 506 aaPredicted RBP11.34□□□□□ -0.59
UPF1-208ENST00000600012 LRRN3E7EW58 273 aa11.34□□□□□ -0.59
UPF1-208ENST00000600012 CDC42EP2O14613 210 aa11.34□□□□□ -0.59
UPF1-208ENST00000600012 KLF4O43474 513 aa11.34□□□□□ -0.59
UPF1-208ENST00000600012 GOSR1O95249 250 aa11.34□□□□□ -0.59
UPF1-208ENST00000600012 CLIC3O95833 236 aa11.34□□□□□ -0.59
UPF1-208ENST00000600012 RAF1P04049 648 aa11.34□□□□□ -0.59
UPF1-208ENST00000600012 TP53P04637 393 aaPredicted RBP11.34□□□□□ -0.59
UPF1-208ENST00000600012 EPXP11678 715 aa11.34□□□□□ -0.59
UPF1-208ENST00000600012 ACADSP16219 412 aa11.34□□□□□ -0.59
UPF1-208ENST00000600012 CDH2P19022 906 aaPredicted RBP11.34□□□□□ -0.59
UPF1-208ENST00000600012 HK1P19367 917 aa11.34□□□□□ -0.59
UPF1-208ENST00000600012 CXCR1P25024 350 aa11.34□□□□□ -0.59
UPF1-208ENST00000600012 FPR3P25089 353 aa11.34□□□□□ -0.59
UPF1-208ENST00000600012 EPHA2P29317 976 aa11.34□□□□□ -0.59
UPF1-208ENST00000600012 CAPGP40121 348 aa11.34□□□□□ -0.59
UPF1-208ENST00000600012 GSSP48637 474 aa11.34□□□□□ -0.59
UPF1-208ENST00000600012 ADAM8P78325 824 aa11.34□□□□□ -0.59
UPF1-208ENST00000600012 ADARB1P78563 741 aaKnown RBP11.34□□□□□ -0.59
UPF1-208ENST00000600012 SORDQ00796 357 aa11.34□□□□□ -0.59
UPF1-208ENST00000600012 PRKCDQ05655 676 aa11.34□□□□□ -0.59
UPF1-208ENST00000600012 TSPAN31Q12999 210 aa11.34□□□□□ -0.59
UPF1-208ENST00000600012 SLC36A3Q495N2 470 aa11.34□□□□□ -0.59
UPF1-208ENST00000600012 RNF113BQ8IZP6 322 aaKnown RBP11.34□□□□□ -0.59
UPF1-208ENST00000600012 ZNF555Q8NEP9 628 aa11.34□□□□□ -0.59
UPF1-208ENST00000600012 OR13C2Q8NGS9 318 aa11.34□□□□□ -0.59
UPF1-208ENST00000600012 BPIFA2Q96DR5 249 aa11.34□□□□□ -0.59
UPF1-208ENST00000600012 CNBD2Q96M20 576 aa11.34□□□□□ -0.59
UPF1-208ENST00000600012 TMEM43Q9BTV4 400 aa11.34□□□□□ -0.59
UPF1-208ENST00000600012 HHATLQ9HCP6 504 aa11.34□□□□□ -0.59
UPF1-208ENST00000600012 FAM118AQ9NWS6 357 aa11.34□□□□□ -0.59
UPF1-208ENST00000600012 REV1Q9UBZ9 1251 aa11.34□□□□□ -0.59
UPF1-208ENST00000600012 DKKL1Q9UK85 242 aa11.34□□□□□ -0.59
UPF1-208ENST00000600012 CAMK2AQ9UQM7 478 aa11.34□□□□□ -0.59
UPF1-208ENST00000600012 TMEM5Q9Y2B1 443 aa11.34□□□□□ -0.59
UPF1-208ENST00000600012 RPH3AQ9Y2J0 694 aaPredicted RBP11.34□□□□□ -0.59
UPF1-208ENST00000600012 ZC3H12DA2A288 527 aaKnown RBP11.33□□□□□ -0.6
UPF1-208ENST00000600012 MBD3L4A6NDZ8 208 aaPredicted RBP11.33□□□□□ -0.6
UPF1-208ENST00000600012 MBD3L3A6NE82 208 aaPredicted RBP11.33□□□□□ -0.6
UPF1-208ENST00000600012 MBD3L5A6NJ08 208 aaPredicted RBP11.33□□□□□ -0.6
UPF1-208ENST00000600012 EEF1E1-BLOC1S5C9J1V9 151 aa11.33□□□□□ -0.6
UPF1-208ENST00000600012 ETV2O00321 342 aaPredicted RBP11.33□□□□□ -0.6
UPF1-208ENST00000600012 EEF1E1O43324 174 aaKnown RBP11.33□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms