RNA–Protein interactions for RNA: ENST00000599848.5

UPF1-207, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 1 (best) BASIC

Gene UPF1, Length 5,311 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-207ENST00000599848 OR2T7P0C7T2 308 aa18.95■□□□□ 0.62
UPF1-207ENST00000599848 C6orf183Q5T699 404 aa18.95■□□□□ 0.62
UPF1-207ENST00000599848 VRK2Q86Y07 508 aa18.95■□□□□ 0.62
UPF1-207ENST00000599848 NKAIN3Q8N8D7 197 aa18.95■□□□□ 0.62
UPF1-207ENST00000599848 OR2T27Q8NH04 317 aa18.95■□□□□ 0.62
UPF1-207ENST00000599848 MACROD1Q9BQ69 325 aa18.95■□□□□ 0.62
UPF1-207ENST00000599848 NMNAT2Q9BZQ4 307 aa18.95■□□□□ 0.62
UPF1-207ENST00000599848 CSO75390 466 aaKnown RBP18.94■□□□□ 0.62
UPF1-207ENST00000599848 ATXN1LP0C7T5 689 aaKnown RBP18.94■□□□□ 0.62
UPF1-207ENST00000599848 MYOGP15173 224 aa18.94■□□□□ 0.62
UPF1-207ENST00000599848 RGRP47804 291 aa18.94■□□□□ 0.62
UPF1-207ENST00000599848 RPS18P62269 152 aaKnown RBP18.94■□□□□ 0.62
UPF1-207ENST00000599848 METRNLQ641Q3 311 aa18.94■□□□□ 0.62
UPF1-207ENST00000599848 CPEB2Q7Z5Q1 589 aaKnown RBP18.94■□□□□ 0.62
UPF1-207ENST00000599848 DPPA2Q7Z7J5 298 aa18.94■□□□□ 0.62
UPF1-207ENST00000599848 PDZD9Q8IXQ8 264 aa18.94■□□□□ 0.62
UPF1-207ENST00000599848 OR1E3Q8WZA6 343 aa18.94■□□□□ 0.62
UPF1-207ENST00000599848 PHYHIPQ92561 330 aa18.94■□□□□ 0.62
UPF1-207ENST00000599848 ITFG2Q969R8 447 aa18.94■□□□□ 0.62
UPF1-207ENST00000599848 SLAMF9Q96A28 289 aa18.94■□□□□ 0.62
UPF1-207ENST00000599848 MUTYHQ9UIF7 546 aa18.94■□□□□ 0.62
UPF1-207ENST00000599848 SLC22A5O76082 557 aa18.94■□□□□ 0.62
UPF1-207ENST00000599848 SLC14A1Q13336 389 aa18.94■□□□□ 0.62
UPF1-207ENST00000599848 COMTD1Q86VU5 262 aa18.94■□□□□ 0.62
UPF1-207ENST00000599848 STT3BQ8TCJ2 826 aa18.94■□□□□ 0.62
UPF1-207ENST00000599848 HAS2Q92819 552 aa18.94■□□□□ 0.62
UPF1-207ENST00000599848 ADAMTS6Q9UKP5 1117 aa18.94■□□□□ 0.62
UPF1-207ENST00000599848 SLCO2B1O94956 709 aa18.94■□□□□ 0.62
UPF1-207ENST00000599848 GM2AP17900 193 aa18.94■□□□□ 0.62
UPF1-207ENST00000599848 IRS1P35568 1242 aa18.94■□□□□ 0.62
UPF1-207ENST00000599848 MAP4K2Q12851 820 aa18.94■□□□□ 0.62
UPF1-207ENST00000599848 SLC35D3Q5M8T2 416 aa18.94■□□□□ 0.62
UPF1-207ENST00000599848 FCRLBQ6BAA4 426 aa18.94■□□□□ 0.62
UPF1-207ENST00000599848 METAP1DQ6UB28 335 aaPredicted RBP18.94■□□□□ 0.62
UPF1-207ENST00000599848 ZFP41Q8N8Y5 198 aa18.94■□□□□ 0.62
UPF1-207ENST00000599848 ZNF593O00488 134 aaPredicted RBP18.94■□□□□ 0.62
UPF1-207ENST00000599848 ZNF628Q5EBL2 1059 aa18.94■□□□□ 0.62
UPF1-207ENST00000599848 ABHD17CQ6PCB6 329 aa18.94■□□□□ 0.62
UPF1-207ENST00000599848 MYH2Q9UKX2 1941 aa18.94■□□□□ 0.62
UPF1-207ENST00000599848 TRAV27A0A087WT01 109 aa18.93■□□□□ 0.62
UPF1-207ENST00000599848 KLK10O43240 276 aa18.93■□□□□ 0.62
UPF1-207ENST00000599848 UCNP55089 124 aa18.93■□□□□ 0.62
UPF1-207ENST00000599848 OR8G1Q15617 311 aa18.93■□□□□ 0.62
UPF1-207ENST00000599848 TP53INP2Q8IXH6 220 aa18.93■□□□□ 0.62
UPF1-207ENST00000599848 SYNPRQ8TBG9 265 aa18.93■□□□□ 0.62
UPF1-207ENST00000599848 SERTAD4Q9NUC0 356 aa18.93■□□□□ 0.62
UPF1-207ENST00000599848 CXorf51AA0A1B0GTR3 108 aa18.93■□□□□ 0.62
UPF1-207ENST00000599848 CRYM-AS1A6NIL9 109 aa18.93■□□□□ 0.62
UPF1-207ENST00000599848 IDSB3KWA1 339 aa18.93■□□□□ 0.62
UPF1-207ENST00000599848 F5H5P2 479 aa18.93■□□□□ 0.62
UPF1-207ENST00000599848 RAD1O60671 282 aa18.93■□□□□ 0.62
UPF1-207ENST00000599848 CTXN2P0C2S0 81 aa18.93■□□□□ 0.62
UPF1-207ENST00000599848 C1orf140Q5VVS0 124 aa18.93■□□□□ 0.62
UPF1-207ENST00000599848 LMNTD1Q8N9Z9 388 aa18.93■□□□□ 0.62
UPF1-207ENST00000599848 KIRREL1Q96J84 757 aa18.93■□□□□ 0.62
UPF1-207ENST00000599848 METTL12A8MUP2 240 aa18.93■□□□□ 0.62
UPF1-207ENST00000599848 NDUFB7P17568 137 aa18.93■□□□□ 0.62
UPF1-207ENST00000599848 CAPZBP47756 277 aa18.93■□□□□ 0.62
UPF1-207ENST00000599848 PYCR3Q53H96 274 aa18.93■□□□□ 0.62
UPF1-207ENST00000599848 OR9Q2Q8NGE9 314 aa18.93■□□□□ 0.62
UPF1-207ENST00000599848 TP63Q9H3D4 680 aaPredicted RBP18.93■□□□□ 0.62
UPF1-207ENST00000599848 GFOD1Q9NXC2 390 aa18.93■□□□□ 0.62
UPF1-207ENST00000599848 TIMM10BQ9Y5J6 103 aa18.93■□□□□ 0.62
UPF1-207ENST00000599848 NUP188Q5SRE5 1749 aa18.93■□□□□ 0.62
UPF1-207ENST00000599848 KIR2DS1A0A191URI9 304 aa18.93■□□□□ 0.62
UPF1-207ENST00000599848 FRS3O43559 492 aa18.93■□□□□ 0.62
UPF1-207ENST00000599848 BCKDHBP21953 392 aa18.93■□□□□ 0.62
UPF1-207ENST00000599848 KIR2DS4P43632 304 aa18.93■□□□□ 0.62
UPF1-207ENST00000599848 ZNF252P-AS1Q0IIN9 211 aa18.93■□□□□ 0.62
UPF1-207ENST00000599848 KIR2DS1Q14954 304 aa18.93■□□□□ 0.62
UPF1-207ENST00000599848 PRAMEF9Q5VWM5 478 aa18.93■□□□□ 0.62
UPF1-207ENST00000599848 MBOAT2Q6ZWT7 520 aa18.93■□□□□ 0.62
UPF1-207ENST00000599848 NAA40Q86UY6 237 aa18.93■□□□□ 0.62
UPF1-207ENST00000599848 FBXL14Q8N1E6 418 aa18.93■□□□□ 0.62
UPF1-207ENST00000599848 ARL11Q969Q4 196 aa18.93■□□□□ 0.62
UPF1-207ENST00000599848 ISOC1Q96CN7 298 aa18.93■□□□□ 0.62
UPF1-207ENST00000599848 TRIB1Q96RU8 372 aa18.93■□□□□ 0.62
UPF1-207ENST00000599848 C12orf49Q9H741 205 aa18.93■□□□□ 0.62
UPF1-207ENST00000599848 EHFQ9NZC4 300 aa18.93■□□□□ 0.62
UPF1-207ENST00000599848 LILRA5A6NI73 299 aa18.93■□□□□ 0.62
UPF1-207ENST00000599848 ZNF14P17017 642 aaPredicted RBP18.93■□□□□ 0.62
UPF1-207ENST00000599848 MYF6P23409 242 aa18.93■□□□□ 0.62
UPF1-207ENST00000599848 DCUN1D4Q92564 292 aa18.93■□□□□ 0.62
UPF1-207ENST00000599848 ATOH8Q96SQ7 321 aa18.93■□□□□ 0.62
UPF1-207ENST00000599848 ISYNA1Q9NPH2 558 aa18.93■□□□□ 0.62
UPF1-207ENST00000599848 LOC101059915A0A1B0GWI6 518 aaPredicted RBP18.92■□□□□ 0.62
UPF1-207ENST00000599848 FBXO45P0C2W1 286 aa18.92■□□□□ 0.62
UPF1-207ENST00000599848 ACP2P11117 423 aa18.92■□□□□ 0.62
UPF1-207ENST00000599848 MFGE8Q08431 387 aaPredicted RBP18.92■□□□□ 0.62
UPF1-207ENST00000599848 NDUFAF7Q7L592 441 aa18.92■□□□□ 0.62
UPF1-207ENST00000599848 OR13J1Q8NGT2 312 aa18.92■□□□□ 0.62
UPF1-207ENST00000599848 ST8SIA1Q92185 356 aa18.92■□□□□ 0.62
UPF1-207ENST00000599848 MED16Q9Y2X0 877 aa18.92■□□□□ 0.62
UPF1-207ENST00000599848 DOK2O60496 412 aa18.92■□□□□ 0.62
UPF1-207ENST00000599848 TSPAN12O95859 305 aa18.92■□□□□ 0.62
UPF1-207ENST00000599848 AKR1C1Q04828 323 aa18.92■□□□□ 0.62
UPF1-207ENST00000599848 WFDC8Q8IUA0 241 aa18.92■□□□□ 0.62
UPF1-207ENST00000599848 SLC22A24Q8N4F4 322 aa18.92■□□□□ 0.62
UPF1-207ENST00000599848 KHSRPQ92945 711 aaKnown RBP eCLIP18.92■□□□□ 0.627e-7■■■□□ 17
UPF1-207ENST00000599848 SDSLQ96GA7 329 aa18.92■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms