RNA–Protein interactions for RNA: ENST00000597901.1

LIG1-215, Transcript of DNA ligase 1, humanhuman

TSL 4

Gene LIG1, Length 565 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-215ENST00000597901 RNF217Q8TC41 542 aa13.2□□□□□ -0.3
LIG1-215ENST00000597901 DHRS9Q9BPW9 319 aa13.2□□□□□ -0.3
LIG1-215ENST00000597901 TMEM120AQ9BXJ8 343 aa13.2□□□□□ -0.3
LIG1-215ENST00000597901 KAT8Q9H7Z6 458 aaKnown RBP13.2□□□□□ -0.3
LIG1-215ENST00000597901 EVA1AQ9H8M9 152 aa13.2□□□□□ -0.3
LIG1-215ENST00000597901 FAIMQ9NVQ4 179 aa13.2□□□□□ -0.3
LIG1-215ENST00000597901 SELENONQ9NZV5 590 aa13.2□□□□□ -0.3
LIG1-215ENST00000597901 TESQ9UGI8 421 aaKnown RBP13.2□□□□□ -0.3
LIG1-215ENST00000597901 B3GALT5Q9Y2C3 310 aa13.2□□□□□ -0.3
LIG1-215ENST00000597901 VPS13CQ709C8 3753 aa13.2□□□□□ -0.3
LIG1-215ENST00000597901 ARID1AO14497 2285 aa13.19□□□□□ -0.3
LIG1-215ENST00000597901 A0A0B4J2E0 115 aa13.19□□□□□ -0.3
LIG1-215ENST00000597901 LOC102725191A0A1B0GVB3 256 aa13.19□□□□□ -0.3
LIG1-215ENST00000597901 A0A1B0GX12 115 aa13.19□□□□□ -0.3
LIG1-215ENST00000597901 MS4A18H0YCH9 400 aa13.19□□□□□ -0.3
LIG1-215ENST00000597901 M0R082 166 aa13.19□□□□□ -0.3
LIG1-215ENST00000597901 FBP2O00757 339 aa13.19□□□□□ -0.3
LIG1-215ENST00000597901 AIM2O14862 343 aa13.19□□□□□ -0.3
LIG1-215ENST00000597901 WNT11O96014 354 aa13.19□□□□□ -0.3
LIG1-215ENST00000597901 CBLP22681 906 aa13.19□□□□□ -0.3
LIG1-215ENST00000597901 GRPRP30550 384 aa13.19□□□□□ -0.3
LIG1-215ENST00000597901 TTKP33981 857 aa13.19□□□□□ -0.3
LIG1-215ENST00000597901 SPOCK1Q08629 439 aa13.19□□□□□ -0.3
LIG1-215ENST00000597901 C1DQ13901 141 aaKnown RBP13.19□□□□□ -0.3
LIG1-215ENST00000597901 CLEC12BQ2HXU8 276 aa13.19□□□□□ -0.3
LIG1-215ENST00000597901 MS4A18Q3C1V0 323 aa13.19□□□□□ -0.3
LIG1-215ENST00000597901 HIKESHIQ53FT3 197 aa13.19□□□□□ -0.3
LIG1-215ENST00000597901 LINGO2Q7L985 606 aa13.19□□□□□ -0.3
LIG1-215ENST00000597901 ZNF417Q8TAU3 575 aa13.19□□□□□ -0.3
LIG1-215ENST00000597901 BCL2L2Q92843 193 aaPredicted RBP13.19□□□□□ -0.3
LIG1-215ENST00000597901 ZNF587Q96SQ5 575 aaPredicted RBP13.19□□□□□ -0.3
LIG1-215ENST00000597901 LINC00470Q9BZP3 86 aa13.19□□□□□ -0.3
LIG1-215ENST00000597901 ALG2Q9H553 416 aa13.19□□□□□ -0.3
LIG1-215ENST00000597901 B3GAT1Q9P2W7 334 aa13.19□□□□□ -0.3
LIG1-215ENST00000597901 POU2F3Q9UKI9 436 aa13.19□□□□□ -0.3
LIG1-215ENST00000597901 ZNF587BE7ETH6 402 aa13.18□□□□□ -0.3
LIG1-215ENST00000597901 NDUFS7O75251 213 aa13.18□□□□□ -0.3
LIG1-215ENST00000597901 ZNF432O94892 652 aa13.18□□□□□ -0.3
LIG1-215ENST00000597901 C8BP07358 591 aa13.18□□□□□ -0.3
LIG1-215ENST00000597901 GZMMP51124 257 aa13.18□□□□□ -0.3
LIG1-215ENST00000597901 FABP6P51161 128 aa13.18□□□□□ -0.3
LIG1-215ENST00000597901 ARFIP2P53365 341 aa13.18□□□□□ -0.3
LIG1-215ENST00000597901 CDH12P55289 794 aa13.18□□□□□ -0.3
LIG1-215ENST00000597901 NCALDP61601 193 aa13.18□□□□□ -0.3
LIG1-215ENST00000597901 CYLC2Q14093 348 aaPredicted RBP13.18□□□□□ -0.3
LIG1-215ENST00000597901 ETFDHQ16134 617 aa13.18□□□□□ -0.3
LIG1-215ENST00000597901 NANOGP8Q6NSW7 305 aa13.18□□□□□ -0.3
LIG1-215ENST00000597901 LINC00114Q6XXX2 140 aa13.18□□□□□ -0.3
LIG1-215ENST00000597901 RANBP3LQ86VV4 465 aaPredicted RBP13.18□□□□□ -0.3
LIG1-215ENST00000597901 GPR32P1Q8NGA4 272 aa13.18□□□□□ -0.3
LIG1-215ENST00000597901 OR1K1Q8NGR3 316 aa13.18□□□□□ -0.3
LIG1-215ENST00000597901 OR6S1Q8NH40 331 aa13.18□□□□□ -0.3
LIG1-215ENST00000597901 OR10A6Q8NH74 314 aa13.18□□□□□ -0.3
LIG1-215ENST00000597901 MCHR1Q99705 422 aa13.18□□□□□ -0.3
LIG1-215ENST00000597901 ARHGDIGQ99819 225 aa13.18□□□□□ -0.3
LIG1-215ENST00000597901 NANOGQ9H9S0 305 aa13.18□□□□□ -0.3
LIG1-215ENST00000597901 KLHL14Q9P2G3 628 aa13.18□□□□□ -0.3
LIG1-215ENST00000597901 ATP23Q9Y6H3 246 aa13.18□□□□□ -0.3
LIG1-215ENST00000597901 NF1P21359 2839 aa13.18□□□□□ -0.3
LIG1-215ENST00000597901 USF3Q68DE3 2245 aa13.17□□□□□ -0.3
LIG1-215ENST00000597901 FLNAP21333 2647 aaKnown RBP13.17□□□□□ -0.3
LIG1-215ENST00000597901 RPL36A-HNRNPH2H7BZ11 118 aa13.17□□□□□ -0.3
LIG1-215ENST00000597901 M0R3H8 397 aa13.17□□□□□ -0.3
LIG1-215ENST00000597901 FMO6PO60774 539 aa13.17□□□□□ -0.3
LIG1-215ENST00000597901 IGHV4-39P01824 125 aa13.17□□□□□ -0.3
LIG1-215ENST00000597901 BGLAPP02818 100 aa13.17□□□□□ -0.3
LIG1-215ENST00000597901 OPN1SWP03999 348 aa13.17□□□□□ -0.3
LIG1-215ENST00000597901 ACVR1BP36896 505 aa13.17□□□□□ -0.3
LIG1-215ENST00000597901 SF3A3Q12874 501 aaKnown RBP eCLIP13.17□□□□□ -0.3
LIG1-215ENST00000597901 MFSD13AQ14CX5 517 aa13.17□□□□□ -0.3
LIG1-215ENST00000597901 NRF1Q16656 503 aa13.17□□□□□ -0.3
LIG1-215ENST00000597901 TBRG1Q3YBR2 411 aa13.17□□□□□ -0.3
LIG1-215ENST00000597901 HMBOX1Q6NT76 420 aa13.17□□□□□ -0.3
LIG1-215ENST00000597901 KLHL24Q6TFL4 600 aa13.17□□□□□ -0.3
LIG1-215ENST00000597901 NHLRC1Q6VVB1 395 aa13.17□□□□□ -0.3
LIG1-215ENST00000597901 B3GLCTQ6Y288 498 aa13.17□□□□□ -0.3
LIG1-215ENST00000597901 PATL1Q86TB9 770 aaKnown RBP13.17□□□□□ -0.3
LIG1-215ENST00000597901 RBM45Q8IUH3 476 aaKnown RBP13.17□□□□□ -0.3
LIG1-215ENST00000597901 SLC30A8Q8IWU4 369 aa13.17□□□□□ -0.3
LIG1-215ENST00000597901 FBXL14Q8N1E6 418 aa13.17□□□□□ -0.3
LIG1-215ENST00000597901 ANKK1Q8NFD2 765 aa13.17□□□□□ -0.3
LIG1-215ENST00000597901 OR6T1Q8NGN1 323 aa13.17□□□□□ -0.3
LIG1-215ENST00000597901 SLC41A3Q96GZ6 507 aa13.17□□□□□ -0.3
LIG1-215ENST00000597901 EPYCQ99645 322 aa13.17□□□□□ -0.3
LIG1-215ENST00000597901 FKRPQ9H9S5 495 aa13.17□□□□□ -0.3
LIG1-215ENST00000597901 OBP2BQ9NPH6 170 aa13.17□□□□□ -0.3
LIG1-215ENST00000597901 CBLN4Q9NTU7 201 aa13.17□□□□□ -0.3
LIG1-215ENST00000597901 ZNF446Q9NWS9 450 aa13.17□□□□□ -0.3
LIG1-215ENST00000597901 GDF2Q9UK05 429 aaPredicted RBP13.17□□□□□ -0.3
LIG1-215ENST00000597901 RCE1Q9Y256 329 aa13.17□□□□□ -0.3
LIG1-215ENST00000597901 A0A096LPE4 126 aa13.16□□□□□ -0.3
LIG1-215ENST00000597901 A0A1W2PPZ6 126 aa13.16□□□□□ -0.3
LIG1-215ENST00000597901 SLC43A1O75387 559 aa13.16□□□□□ -0.3
LIG1-215ENST00000597901 HPRP00739 348 aa13.16□□□□□ -0.3
LIG1-215ENST00000597901 TROVE2P10155 538 aaKnown RBP eCLIP13.16□□□□□ -0.3
LIG1-215ENST00000597901 HOXB1P14653 301 aaPredicted RBP13.16□□□□□ -0.3
LIG1-215ENST00000597901 PAX7P23759 505 aa13.16□□□□□ -0.3
LIG1-215ENST00000597901 UBE2NP61088 152 aaKnown RBP13.16□□□□□ -0.3
LIG1-215ENST00000597901 ARF1P84077 181 aaKnown RBP13.16□□□□□ -0.3
LIG1-215ENST00000597901 PPP2R2BQ00005 443 aa13.16□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 44.2 ms