RNA–Protein interactions for RNA: ENST00000597423.1

TRIM28-209, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 733 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-209ENST00000597423 RBM48Q5RL73 367 aaKnown RBP13.69□□□□□ -0.22
TRIM28-209ENST00000597423 SLC25A30Q5SVS4 291 aa13.69□□□□□ -0.22
TRIM28-209ENST00000597423 THSD4Q6ZMP0 1018 aa13.69□□□□□ -0.22
TRIM28-209ENST00000597423 PXKQ7Z7A4 578 aa13.69□□□□□ -0.22
TRIM28-209ENST00000597423 ZNF786Q8N393 782 aa13.69□□□□□ -0.22
TRIM28-209ENST00000597423 FAM26EQ8N5C1 309 aa13.69□□□□□ -0.22
TRIM28-209ENST00000597423 TCEANCQ8N8B7 351 aa13.69□□□□□ -0.22
TRIM28-209ENST00000597423 OR4Q3Q8NH05 313 aa13.69□□□□□ -0.22
TRIM28-209ENST00000597423 MOSPD2Q8NHP6 518 aa13.69□□□□□ -0.22
TRIM28-209ENST00000597423 SLC39A7Q92504 469 aa13.69□□□□□ -0.22
TRIM28-209ENST00000597423 HDAC2Q92769 488 aaKnown RBP13.69□□□□□ -0.22
TRIM28-209ENST00000597423 PNPLA2Q96AD5 504 aa13.69□□□□□ -0.22
TRIM28-209ENST00000597423 SLC6A15Q9H2J7 730 aa13.69□□□□□ -0.22
TRIM28-209ENST00000597423 NRIP3Q9NQ35 241 aa13.69□□□□□ -0.22
TRIM28-209ENST00000597423 RASSF1Q9NS23 344 aa13.69□□□□□ -0.22
TRIM28-209ENST00000597423 UBAP1Q9NZ09 502 aa13.69□□□□□ -0.22
TRIM28-209ENST00000597423 RNF6Q9Y252 685 aa13.69□□□□□ -0.22
TRIM28-209ENST00000597423 MYRFQ9Y2G1 1151 aa13.69□□□□□ -0.22
TRIM28-209ENST00000597423 NOX1Q9Y5S8 564 aa13.69□□□□□ -0.22
TRIM28-209ENST00000597423 IER3IP1Q9Y5U9 82 aa13.69□□□□□ -0.22
TRIM28-209ENST00000597423 CNTRLQ7Z7A1 2325 aa13.69□□□□□ -0.22
TRIM28-209ENST00000597423 DCHS1Q96JQ0 3298 aa13.68□□□□□ -0.22
TRIM28-209ENST00000597423 A0A0J9YW62 118 aa13.68□□□□□ -0.22
TRIM28-209ENST00000597423 LOC102725191A0A1B0GVB3 256 aa13.68□□□□□ -0.22
TRIM28-209ENST00000597423 TNFSF11O14788 317 aa13.68□□□□□ -0.22
TRIM28-209ENST00000597423 SURF4O15260 269 aa13.68□□□□□ -0.22
TRIM28-209ENST00000597423 AKR7A3O95154 331 aa13.68□□□□□ -0.22
TRIM28-209ENST00000597423 TNFAIP8O95379 198 aa13.68□□□□□ -0.22
TRIM28-209ENST00000597423 SYNGR4O95473 234 aa13.68□□□□□ -0.22
TRIM28-209ENST00000597423 IGHG3P01860 377 aa13.68□□□□□ -0.22
TRIM28-209ENST00000597423 PDGFAP04085 211 aa13.68□□□□□ -0.22
TRIM28-209ENST00000597423 CELA3AP09093 270 aa13.68□□□□□ -0.22
TRIM28-209ENST00000597423 CPN1P15169 458 aa13.68□□□□□ -0.22
TRIM28-209ENST00000597423 ZNF3P17036 446 aa13.68□□□□□ -0.22
TRIM28-209ENST00000597423 SHC1P29353 583 aa13.68□□□□□ -0.22
TRIM28-209ENST00000597423 STARP49675 285 aa13.68□□□□□ -0.22
TRIM28-209ENST00000597423 DAP3P51398 398 aaKnown RBP13.68□□□□□ -0.22
TRIM28-209ENST00000597423 FXYD6P3P58550 94 aa13.68□□□□□ -0.22
TRIM28-209ENST00000597423 ERVK-25P63136 954 aa13.68□□□□□ -0.22
TRIM28-209ENST00000597423 C1DQ13901 141 aaKnown RBP13.68□□□□□ -0.22
TRIM28-209ENST00000597423 OCLNQ16625 522 aa13.68□□□□□ -0.22
TRIM28-209ENST00000597423 RNFT1Q5M7Z0 435 aa13.68□□□□□ -0.22
TRIM28-209ENST00000597423 C6orf141Q5SZD1 244 aa13.68□□□□□ -0.22
TRIM28-209ENST00000597423 FAM205BPQ63HN1 556 aa13.68□□□□□ -0.22
TRIM28-209ENST00000597423 VASNQ6EMK4 673 aa13.68□□□□□ -0.22
TRIM28-209ENST00000597423 TRILQ7L0X0 811 aa13.68□□□□□ -0.22
TRIM28-209ENST00000597423 HDDC2Q7Z4H3 204 aa13.68□□□□□ -0.22
TRIM28-209ENST00000597423 UBQLNLQ8IYU4 475 aa13.68□□□□□ -0.22
TRIM28-209ENST00000597423 ENTHD1Q8IYW4 607 aa13.68□□□□□ -0.22
TRIM28-209ENST00000597423 TMEM163Q8TC26 289 aa13.68□□□□□ -0.22
TRIM28-209ENST00000597423 FBLIM1Q8WUP2 373 aa13.68□□□□□ -0.22
TRIM28-209ENST00000597423 RFKQ969G6 155 aa13.68□□□□□ -0.22
TRIM28-209ENST00000597423 CPNE4Q96A23 557 aaPredicted RBP13.68□□□□□ -0.22
TRIM28-209ENST00000597423 DNAJA3Q96EY1 480 aa13.68□□□□□ -0.22
TRIM28-209ENST00000597423 OXGR1Q96P68 337 aa13.68□□□□□ -0.22
TRIM28-209ENST00000597423 KATNB1Q9BVA0 655 aa13.68□□□□□ -0.22
TRIM28-209ENST00000597423 ENKD1Q9H0I2 346 aa13.68□□□□□ -0.22
TRIM28-209ENST00000597423 FN3KQ9H479 309 aa13.68□□□□□ -0.22
TRIM28-209ENST00000597423 FANCFQ9NPI8 374 aa13.68□□□□□ -0.22
TRIM28-209ENST00000597423 CMC2Q9NRP2 79 aa13.68□□□□□ -0.22
TRIM28-209ENST00000597423 ZNF226Q9NYT6 803 aa13.68□□□□□ -0.22
TRIM28-209ENST00000597423 TPRKBQ9Y3C4 175 aa13.68□□□□□ -0.22
TRIM28-209ENST00000597423 A0A1B0GVC2 190 aa13.67□□□□□ -0.22
TRIM28-209ENST00000597423 A0A1W2PNV4 684 aa13.67□□□□□ -0.22
TRIM28-209ENST00000597423 MAGEA13PA6NCF6 341 aa13.67□□□□□ -0.22
TRIM28-209ENST00000597423 A6NIZ1 184 aa13.67□□□□□ -0.22
TRIM28-209ENST00000597423 NPIPB13A6NJU9 1138 aa13.67□□□□□ -0.22
TRIM28-209ENST00000597423 AQP7P3A6NL99 342 aa13.67□□□□□ -0.22
TRIM28-209ENST00000597423 NPIPB4C9JG80 1138 aa13.67□□□□□ -0.22
TRIM28-209ENST00000597423 MCIDASD6RGH6 385 aa13.67□□□□□ -0.22
TRIM28-209ENST00000597423 C11orf98E9PRG8 122 aa13.67□□□□□ -0.22
TRIM28-209ENST00000597423 MS4A18H0YCH9 400 aa13.67□□□□□ -0.22
TRIM28-209ENST00000597423 XKRYO14609 159 aa13.67□□□□□ -0.22
TRIM28-209ENST00000597423 TXNDC12O95881 172 aa13.67□□□□□ -0.22
TRIM28-209ENST00000597423 F13BP05160 661 aa13.67□□□□□ -0.22
TRIM28-209ENST00000597423 FAM87AP0C7U9 286 aa13.67□□□□□ -0.22
TRIM28-209ENST00000597423 ZNF708P17019 499 aa13.67□□□□□ -0.22
TRIM28-209ENST00000597423 ACVR2AP27037 513 aa13.67□□□□□ -0.22
TRIM28-209ENST00000597423 SDHAP31040 664 aa13.67□□□□□ -0.22
TRIM28-209ENST00000597423 EIF1AXP47813 144 aaKnown RBP13.67□□□□□ -0.22
TRIM28-209ENST00000597423 LHX2P50458 406 aa13.67□□□□□ -0.22
TRIM28-209ENST00000597423 CLDN20P56880 219 aa13.67□□□□□ -0.22
TRIM28-209ENST00000597423 RAP1BP61224 184 aa13.67□□□□□ -0.22
TRIM28-209ENST00000597423 RPL27P61353 136 aaKnown RBP13.67□□□□□ -0.22
TRIM28-209ENST00000597423 RAP1AP62834 184 aa13.67□□□□□ -0.22
TRIM28-209ENST00000597423 PMP22Q01453 160 aa13.67□□□□□ -0.22
TRIM28-209ENST00000597423 SF3B4Q15427 424 aaKnown RBP eCLIP13.67□□□□□ -0.222e-12■■■□□ 18.2
TRIM28-209ENST00000597423 MS4A18Q3C1V0 323 aa13.67□□□□□ -0.22
TRIM28-209ENST00000597423 LINC00303Q3SY05 128 aa13.67□□□□□ -0.22
TRIM28-209ENST00000597423 KRTCAP3Q53RY4 240 aa13.67□□□□□ -0.22
TRIM28-209ENST00000597423 SLC35F1Q5T1Q4 408 aa13.67□□□□□ -0.22
TRIM28-209ENST00000597423 FAM180AQ6UWF9 173 aa13.67□□□□□ -0.22
TRIM28-209ENST00000597423 UGT2A3Q6UWM9 527 aa13.67□□□□□ -0.22
TRIM28-209ENST00000597423 GGNQ86UU5 652 aa13.67□□□□□ -0.22
TRIM28-209ENST00000597423 JAZF1Q86VZ6 243 aa13.67□□□□□ -0.22
TRIM28-209ENST00000597423 UEVLDQ8IX04 471 aa13.67□□□□□ -0.22
TRIM28-209ENST00000597423 PM20D2Q8IYS1 436 aa13.67□□□□□ -0.22
TRIM28-209ENST00000597423 TMEM99Q8N816 258 aa13.67□□□□□ -0.22
TRIM28-209ENST00000597423 TEX19Q8NA77 164 aa13.67□□□□□ -0.22
TRIM28-209ENST00000597423 LRRC75AQ8NAA5 344 aa13.67□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms